FvH4_6g17170

permease

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb6
Physical Location & Seq
Reverse (-)
11153558 .. 11155078
1521 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_6g17170.t1

Sequence Viewer

Length: 1521 bp
ATGGCTTCAATCCAATCCACTCCTAGTCCCAAATTCGACGACTTTGAAGCCGATCCCACGCTCACCAACGACGATCTCAAGCCTACAACGCCGGACCAACGGAGCTTTTCGCGGTGGGAATTGGCTAGTCTATGGATTGGCCTTGTTGTGGGAGTGCCAACTTACTACTTGGCTGGTAGTTTAGTTGACCTTGGAATGGCTTGGTGGCAAGGAATTGCCACAGTTGTAGCAGCTAACATAGTACTACTAGTACCACTAGTCCTCACCGGTCATCCGGGCACTAAATATGGCATCTCTTTCCCGGTTTTGGCTAGATCCTCATTTGGGATTCATGGTGCTCATATCCCAACCCTTCTTAGAGCCTTGGTGGGTTGTGGTTGGTATGGAATTGAGACATGGATTGGTGGTGAAGCTATTTTCCTTCTACTACCAAGTTCAATCAAAAGTTCATCTTTTTCCCAACTCCTGCCTTGGTTAGGTACATCCCCATTAGAGTTTGCTTGTTTTATTGTCTTTTGGGTTGCCCAATTGGCCATTGTTTGGAAAGGCATGGATGGAATCAGAGAGCTTGAGAAGTACTCTGCTCCAATACTAATCACACTCACTTCCTGCCTCCTAATTTGGGCTTATGTCAAGGCTGGTGGTTTTAGTCACATGCTTTCCATATCCTCCAAACTCACCTCCCAACAATTTTGGTCCCTCTTCTTTCCTAGCCTCACTGCAAACATTAGCTTCTGGGCTACTCTTGCTCTCAACATACCGGATTTTACACGATACGCCAAGAGCCAGACTGATCAGGTTATCGGTCAGGCGGGGCTCCCAATCTTCATGGGGGCTTTCACATTTGTTGGCCTAGCTGTTACCTGCTCCACTGTGGTGATATTTGGGCATGTCATATCTAATCCAATCCAACTTCTGGGTAAGATTGGAGGGGTAACAACAATAGTCCTAGCCATTTTTGGTGTTAGCCTTGCTACCCTTACAACCAACATTGCAGCTAATGTTGTGGCACCAGCAAATGCACTAGTTAATCTTAGTCCTTCAAGGTTCACATTCAGAAGTGGAGCTATTGTCACAGCTTTGCTTGGAATTGCATTTCAGCCATGGAGGCTTCTTAGATCAAGTGAGAGCTTTGTCTACACATGGCTTGTTGGATATTCTGCTCTGTTGGGTCCAATTGGAGGCATAATTCTTTCAGACTACTATCTTATCCATTGCACAAACTTGAGCATGAAGGACTTGTACACACTAAGTCCTTATGGTGCATACTACTATTCAGGAGGCTACAATTTGGCAGCAATGGCTGCCCTTGTGTTTGGGATTTTGCCTGTGGTTCCAGGTTTCTTGCAAAAAGTTGGGGTTCTTTCTTCGGTATCAAATACATTTGTGATCATCTACAACAATGCCTGGTTTGTTAGCTTTTTCTCTGCTGGTTTTCTATATTGGCTTCTGTTATCTTTGAAAGGAAAACAGAATAAGTCTCTTGCTTCAGCAGACCCCCTATTGCCTCCTGCAAACTAA

Protein Analysis

507

Amino Acids

54.7

Weight (kDa)

8.66

Isoelectric Point (pI)

37.48

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Transp_cyt_pur PF02133 30 - 472 6.2e-98 Permease for cytosine/purines, uracil, thiamine, allantoin
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0015211)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G03555
fragaria_vesca FvH4_6g17170
malus_domestica MD12G1103200.v1.1
prunus_persica Prupe.7G123300_v2.0.a1
pyrus_communis pycom12g10160
rosa_chinensis RchiOBHm_Chr3g0471261
rosa_laevigata RLG00000024193
rosa_multiflora Rmu_co8430243.1_g000001 Rmu_sc0009082.1_g000011
rosa_roxburghii Rroxscaffold_6G00410160
rosa_rugosa Rorug03G0116700
rosa_samantha Rh3AG165800 Rh3BG191200 Rh3CG181500 Rh3DG184400
rosa_wichuraiana Rw3G015610

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 872
AccB1I GGYRCC 1 cut(s) 1009
AccB7I CCANNNNNTGG 2 cut(s) 540, 916
AccI GTMKAC 1 cut(s) 1137
AccII CGCG 1 cut(s) 112
AciI CCGC 2 cut(s) 112, 812
AclWI GGATC 2 cut(s) 47, 309
AcoI YGGCCR 1 cut(s) 531
AcsI RAATTY 1 cut(s) 32
AcuI CTGAAG 1 cut(s) 1473
AfaI GTAC 5 cut(s) 243, 252, 481, 578, 1244
AfiI CCNNNNNNNGG 9 cut(s) 148, 196, 307, 324, 476, 540, 622, 916, 1181
AgeI ACCGGT 1 cut(s) 266
AgsI TTSAA 5 cut(s) 9, 47, 438, 1044, 1462
AhlI ACTAGT 3 cut(s) 247, 256, 1024
AjnI CCWGG 2 cut(s) 1336, 1406
AleI CACNNNNGTG 1 cut(s) 875
Alw21I GWGCWC 1 cut(s) 340
Alw26I GTCTC 2 cut(s) 386, 1485
AlwI GGATC 2 cut(s) 47, 309
AoxI GGCC 3 cut(s) 139, 531, 850
ApeKI GCWGC 4 cut(s) 230, 995, 1295, 1304
ApoI RAATTY 1 cut(s) 32
AsiGI ACCGGT 1 cut(s) 266
AspS9I GGNCC 3 cut(s) 94, 696, 1172
AsuC2I CCSGG 2 cut(s) 276, 302
AsuHPI GGTGA 5 cut(s) 55, 256, 419, 670, 889
AvaII GGWCC 3 cut(s) 94, 696, 1172
BaeGI GKGCMC 1 cut(s) 281
BalI TGGCCA 1 cut(s) 533
BanI GGYRCC 1 cut(s) 1009
BanII GRGCYC 1 cut(s) 819
BarI GAAGNNNNNNTAC 2 cut(s) 1226, 1258
Bbv12I GWGCWC 1 cut(s) 340
BbvI GCAGC 4 cut(s) 242, 1007, 1291, 1307
BccI CCATC 1 cut(s) 548
BciT130I CCWGG 2 cut(s) 1338, 1408
BclI TGATCA 2 cut(s) 793, 1389
BcnI CCSGG 2 cut(s) 276, 302
BcoDI GTCTC 2 cut(s) 386, 1485
BcuI ACTAGT 3 cut(s) 247, 256, 1024
BfaI CTAG 9 cut(s) 24, 126, 248, 257, 312, 711, 854, 950, 1025
BfuAI ACCTGC 1 cut(s) 872
BglI GCCNNNNNGGC 2 cut(s) 530, 1108
BisI GCNGC 4 cut(s) 231, 996, 1296, 1305
BlsI GCNGC 4 cut(s) 232, 997, 1297, 1306
BmcAI AGTACT 2 cut(s) 243, 578
Bme1390I CCNGG 4 cut(s) 276, 302, 1338, 1408
Bme18I GGWCC 3 cut(s) 94, 696, 1172
BmgT120I GGNCC 3 cut(s) 94, 696, 1172
BmiI GGNNCC 5 cut(s) 698, 818, 1011, 1173, 1335
BmrFI CCNGG 4 cut(s) 276, 302, 1338, 1408
BmsI GCATC 1 cut(s) 300
BplI GAGNNNNNCTC 2 cut(s) 563, 595
BpuEI CTTGAG 3 cut(s) 62, 590, 1246
BpuMI CCSGG 2 cut(s) 276, 302
BsaJI CCNNGG 4 cut(s) 190, 363, 470, 1103
BsaWI WCCGGW 2 cut(s) 266, 760
BsaXI ACNNNNNCTCC 2 cut(s) 1056, 1086
Bsc4I CCNNNNNNNGG 9 cut(s) 148, 196, 307, 324, 476, 540, 622, 916, 1181
Bse118I RCCGGY 1 cut(s) 266
Bse3DI GCAATG 3 cut(s) 990, 1213, 1305
BseBI CCWGG 2 cut(s) 1338, 1408
BseDI CCNNGG 4 cut(s) 190, 363, 470, 1103
BseGI GGATG 3 cut(s) 271, 482, 559
BseLI CCNNNNNNNGG 9 cut(s) 148, 196, 307, 324, 476, 540, 622, 916, 1181
BseMI GCAATG 3 cut(s) 990, 1213, 1305
BseSI GKGCMC 1 cut(s) 281
BseXI GCAGC 4 cut(s) 242, 1007, 1291, 1307
Bsh1236I CGCG 1 cut(s) 112
BshFI GGCC 3 cut(s) 141, 533, 852
BshNI GGYRCC 1 cut(s) 1009
BshTI ACCGGT 1 cut(s) 266
BsiHKAI GWGCWC 1 cut(s) 340
BsiSI CCGG 5 cut(s) 92, 267, 275, 302, 761
BslFI GGGAC 2 cut(s) 12, 682
BslI CCNNNNNNNGG 9 cut(s) 148, 196, 307, 324, 476, 540, 622, 916, 1181
BsmAI GTCTC 2 cut(s) 386, 1485
BsmFI GGGAC 2 cut(s) 12, 682
BsnI GGCC 3 cut(s) 141, 533, 852
Bsp1286I GDGCHC 3 cut(s) 281, 340, 819
Bsp1407I TGTACA 1 cut(s) 1242
Bsp143I GATC 6 cut(s) 52, 73, 314, 793, 1118, 1389
Bsp19I CCATGG 1 cut(s) 1103
BspACI CCGC 2 cut(s) 112, 812
BspANI GGCC 3 cut(s) 141, 533, 852
BspFNI CGCG 1 cut(s) 112
BspLI GGNNCC 5 cut(s) 698, 818, 1011, 1173, 1335
BspMI ACCTGC 1 cut(s) 872
BspPI GGATC 2 cut(s) 47, 309
BspT107I GGYRCC 1 cut(s) 1009
BsrDI GCAATG 3 cut(s) 990, 1213, 1305
BsrFI RCCGGY 1 cut(s) 266
BsrGI TGTACA 1 cut(s) 1242
BssAI RCCGGY 1 cut(s) 266
BssECI CCNNGG 4 cut(s) 190, 363, 470, 1103
BssMI GATC 6 cut(s) 52, 73, 314, 793, 1118, 1389
BssT1I CCWWGG 4 cut(s) 190, 363, 470, 1103
Bst2UI CCWGG 2 cut(s) 1338, 1408
Bst4CI ACNGT 2 cut(s) 223, 874
Bst6I CTCTTC 1 cut(s) 707
BstAPI GCANNNNNTGC 1 cut(s) 1304
BstAUI TGTACA 1 cut(s) 1242
BstDEI CTNAG 4 cut(s) 356, 1034, 1115, 1250
BstDSI CCRYGG 1 cut(s) 1103
BstENI CCTNNNNNAGG 1 cut(s) 474
BstF5I GGATG 3 cut(s) 271, 482, 559
BstFNI CGCG 1 cut(s) 112
BstKTI GATC 6 cut(s) 55, 76, 317, 796, 1121, 1392
BstMAI GTCTC 2 cut(s) 386, 1485
BstMBI GATC 6 cut(s) 52, 73, 314, 793, 1118, 1389
BstMWI GCNNNNNNNGC 6 cut(s) 88, 530, 746, 1108, 1301, 1304
BstNI CCWGG 2 cut(s) 1338, 1408
BstNSI RCATGY 2 cut(s) 658, 893
BstSCI CCNGG 4 cut(s) 274, 300, 1336, 1406
BstSLI GKGCMC 1 cut(s) 281
BstUI CGCG 1 cut(s) 112
BstV1I GCAGC 4 cut(s) 242, 1007, 1291, 1307
BstX2I RGATCY 1 cut(s) 314
BstYI RGATCY 1 cut(s) 314
BsuRI GGCC 3 cut(s) 141, 533, 852
BtgI CCRYGG 1 cut(s) 1103
BtsCI GGATG 3 cut(s) 271, 482, 559
BtsI GCAGTG 1 cut(s) 717
BtsIMutI CAGTG 2 cut(s) 717, 870
BveI ACCTGC 1 cut(s) 872
Cfr10I RCCGGY 1 cut(s) 266
Cfr13I GGNCC 3 cut(s) 94, 696, 1172
Csp6I GTAC 5 cut(s) 242, 251, 480, 577, 1243
CspAI ACCGGT 1 cut(s) 266
CspCI CAANNNNNGTGG 2 cut(s) 622, 657
CviAII CATG 9 cut(s) 332, 396, 550, 655, 829, 890, 1104, 1143, 1231
CviQI GTAC 5 cut(s) 242, 251, 480, 577, 1243
DdeI CTNAG 4 cut(s) 356, 1034, 1115, 1250
DpnI GATC 6 cut(s) 54, 75, 316, 795, 1120, 1391
DpnII GATC 6 cut(s) 52, 73, 314, 793, 1118, 1389
EaeI YGGCCR 1 cut(s) 531
Eam1104I CTCTTC 1 cut(s) 707
EarI CTCTTC 1 cut(s) 707
Eco130I CCWWGG 4 cut(s) 190, 363, 470, 1103
Eco24I GRGCYC 1 cut(s) 819
Eco47I GGWCC 3 cut(s) 94, 696, 1172
Eco57I CTGAAG 1 cut(s) 1473
EcoNI CCTNNNNNAGG 1 cut(s) 474
EcoRII CCWGG 2 cut(s) 1336, 1406
EcoT14I CCWWGG 4 cut(s) 190, 363, 470, 1103
EcoT38I GRGCYC 1 cut(s) 819
ErhI CCWWGG 4 cut(s) 190, 363, 470, 1103
FaeI CATG 9 cut(s) 335, 399, 553, 658, 832, 893, 1107, 1146, 1234
FalI AAGNNNNNCTT 2 cut(s) 436, 468
FaqI GGGAC 2 cut(s) 12, 682
FatI CATG 9 cut(s) 331, 395, 549, 654, 828, 889, 1103, 1142, 1230
FauI CCCGC 1 cut(s) 805
FbaI TGATCA 2 cut(s) 793, 1389
FblI GTMKAC 1 cut(s) 1137
Fnu4HI GCNGC 4 cut(s) 231, 996, 1296, 1305
FokI GGATG 3 cut(s) 258, 469, 566
FriOI GRGCYC 1 cut(s) 819
Fsp4HI GCNGC 4 cut(s) 231, 996, 1296, 1305
FspBI CTAG 9 cut(s) 24, 126, 248, 257, 312, 711, 854, 950, 1025
GluI GCNGC 4 cut(s) 231, 996, 1296, 1305
HaeIII GGCC 3 cut(s) 141, 533, 852
HapII CCGG 5 cut(s) 92, 267, 275, 302, 761
Hin1II CATG 9 cut(s) 335, 399, 553, 658, 832, 893, 1107, 1146, 1234
HincII GTYRAC 1 cut(s) 187
HindII GTYRAC 1 cut(s) 187
HinfI GANTC 2 cut(s) 328, 558
HpaII CCGG 5 cut(s) 92, 267, 275, 302, 761
HphI GGTGA 5 cut(s) 55, 256, 419, 670, 889
Hpy166II GTNNAC 4 cut(s) 187, 1050, 1138, 1245
Hpy188I TCNGA 3 cut(s) 563, 1058, 1198
Hpy188III TCNNGA 1 cut(s) 1278
Hpy8I GTNNAC 4 cut(s) 187, 1050, 1138, 1245
Hpy99I CGWCG 2 cut(s) 41, 74
HpyAV CCTTC 4 cut(s) 362, 431, 1050, 1228
HpyCH4III ACNGT 2 cut(s) 223, 874
HpyCH4V TGCA 8 cut(s) 722, 995, 1022, 1094, 1218, 1265, 1348, 1514
HpyF10VI GCNNNNNNNGC 6 cut(s) 88, 530, 746, 1108, 1301, 1304
HpyF3I CTNAG 4 cut(s) 356, 1034, 1115, 1250
Hsp92II CATG 9 cut(s) 335, 399, 553, 658, 832, 893, 1107, 1146, 1234
Ksp22I TGATCA 2 cut(s) 793, 1389
Kzo9I GATC 6 cut(s) 52, 73, 314, 793, 1118, 1389
LmnI GCTCC 5 cut(s) 102, 589, 822, 872, 1064
Lsp1109I GCAGC 4 cut(s) 242, 1007, 1291, 1307
LweI GCATC 1 cut(s) 300
MaeI CTAG 9 cut(s) 24, 126, 248, 257, 312, 711, 854, 950, 1025
MaeIII GTNAC 4 cut(s) 650, 859, 934, 1072
MalI GATC 6 cut(s) 54, 75, 316, 795, 1120, 1391
MboI GATC 6 cut(s) 52, 73, 314, 793, 1118, 1389
MboII GAAGA 3 cut(s) 694, 817, 1359
MfeI CAATTG 2 cut(s) 527, 1176
MflI RGATCY 1 cut(s) 314
MhlI GDGCHC 3 cut(s) 281, 340, 819
MlsI TGGCCA 1 cut(s) 533
MluNI TGGCCA 1 cut(s) 533
MmeI TCCRAC 2 cut(s) 934, 1132
Mox20I TGGCCA 1 cut(s) 533
MscI TGGCCA 1 cut(s) 533
MseI TTAA 1 cut(s) 1029
MslI CAYNNNNRTG 1 cut(s) 875
Msp20I TGGCCA 1 cut(s) 533
MspI CCGG 5 cut(s) 92, 267, 275, 302, 761
MspR9I CCNGG 4 cut(s) 276, 302, 1338, 1408
MunI CAATTG 2 cut(s) 527, 1176
MvaI CCWGG 2 cut(s) 1338, 1408
MvnI CGCG 1 cut(s) 112
MwoI GCNNNNNNNGC 6 cut(s) 88, 530, 746, 1108, 1301, 1304
NciI CCSGG 2 cut(s) 276, 302
NcoI CCATGG 1 cut(s) 1103
NdeII GATC 6 cut(s) 52, 73, 314, 793, 1118, 1389
NlaIII CATG 9 cut(s) 335, 399, 553, 658, 832, 893, 1107, 1146, 1234
NlaIV GGNNCC 5 cut(s) 698, 818, 1011, 1173, 1335
NmuCI GTSAC 2 cut(s) 650, 1072
NspI RCATGY 2 cut(s) 658, 893
OliI CACNNNNGTG 1 cut(s) 875
PfeI GAWTC 2 cut(s) 328, 558
PflMI CCANNNNNTGG 2 cut(s) 540, 916
PinAI ACCGGT 1 cut(s) 266
PkrI GCNGC 4 cut(s) 232, 997, 1297, 1306
Psp6I CCWGG 2 cut(s) 1336, 1406
PspGI CCWGG 2 cut(s) 1336, 1406
PspN4I GGNNCC 5 cut(s) 698, 818, 1011, 1173, 1335
PspPI GGNCC 3 cut(s) 94, 696, 1172
PsuI RGATCY 1 cut(s) 314
RsaI GTAC 5 cut(s) 243, 252, 481, 578, 1244
RsaNI GTAC 5 cut(s) 242, 251, 480, 577, 1243
RseI CAYNNNNRTG 1 cut(s) 875
SaqAI TTAA 1 cut(s) 1029
SatI GCNGC 4 cut(s) 231, 996, 1296, 1305
Sau3AI GATC 6 cut(s) 52, 73, 314, 793, 1118, 1389
Sau96I GGNCC 3 cut(s) 94, 696, 1172
ScaI AGTACT 2 cut(s) 243, 578
ScrFI CCNGG 4 cut(s) 276, 302, 1338, 1408
SduI GDGCHC 3 cut(s) 281, 340, 819
SfaNI GCATC 1 cut(s) 300
SinI GGWCC 3 cut(s) 94, 696, 1172
SmiMI CAYNNNNRTG 1 cut(s) 875
SmlI CTYRAG 3 cut(s) 77, 569, 1225
SmoI CTYRAG 3 cut(s) 77, 569, 1225
SpeI ACTAGT 3 cut(s) 247, 256, 1024
SsiI CCGC 2 cut(s) 112, 812
SspMI CTAG 9 cut(s) 24, 126, 248, 257, 312, 711, 854, 950, 1025
StyD4I CCNGG 4 cut(s) 274, 300, 1336, 1406
StyI CCWWGG 4 cut(s) 190, 363, 470, 1103
TaaI ACNGT 2 cut(s) 223, 874
TaqI TCGA 1 cut(s) 36
TaqII GACCGA 1 cut(s) 794
TatI WGTACW 3 cut(s) 241, 576, 1242
TfiI GAWTC 2 cut(s) 328, 558
Tru1I TTAA 1 cut(s) 1029
Tru9I TTAA 1 cut(s) 1029
TscAI CASTG 2 cut(s) 724, 877
TseFI GTSAC 2 cut(s) 650, 1072
TseI GCWGC 4 cut(s) 230, 995, 1295, 1304
Tsp45I GTSAC 2 cut(s) 650, 1072
TspDTI ATGAA 4 cut(s) 320, 438, 817, 1247
TspGWI ACGGA 1 cut(s) 115
TspRI CASTG 2 cut(s) 724, 877
Van91I CCANNNNNTGG 2 cut(s) 540, 916
VpaK11BI GGWCC 3 cut(s) 94, 696, 1172
XagI CCTNNNNNAGG 1 cut(s) 474
XapI RAATTY 1 cut(s) 32
XceI RCATGY 2 cut(s) 658, 893
XmiI GTMKAC 1 cut(s) 1137
XspI CTAG 9 cut(s) 24, 126, 248, 257, 312, 711, 854, 950, 1025
ZrmI AGTACT 2 cut(s) 243, 578
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.