Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8430243.1

Orthogroup ID

OG0015211

Physical Location & Seq

Genomic Coordinates Reverse (-)

2 .. 1382

Gene Structure 1381 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8430243.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1381 bp

atggtgcccaaatgtctcagctttcatgtccatccctcctttcctgcaataaccagaaacccaagaccctgctctagctttctgacctctccttttctgccaactaacttaactgccaagttccacaccacccatgtacaagctcatcatcatcttactcttagaagccccattttcaccaccatggcttcaatccaatccactcctagtcccaaattcgatgactttgaagccgatcccacgctcaccaacgacgatctcaagcccacaacgccggaccagaggagtttttcccggtgggaattggctagtctttgggttggccttgttgtgggagtgccaacttactacttggctggtagtctagttgaccttggaatggcttggtggcaaggaattgccacagttgtagcagccaacatagtactactagtcccactgatcctcaccggtcatccaggcactaaatatggcatctctttcccggttttggctagatcctcatttgggatccatggtgctcatatcccaactcttctcagagccttggtaggttgtggttggtatggaattgagacgtggatcggtggtgaagcaattttccttctactaccaagttcaatcaaaagttcctcttcgtctcaattcctgccatggctaggcacatccccattagagtttgcttgttttattgtcttttgggttgcccaatcggccattgtttggaaaggcatggatggaatcagagagcttgagaaatactctgctccaattctaatcacactcacgtcctgcctagtaatttgggcttatgtcaaagctggtggttttagccacatgctttccatatcctccaaactaacatcccaacaattttggtccctcttctttccttccctcactgcaaacataagcttctgggctactgttgctctcaacatacccgattttacccgatacgccaagagccagactgatcaggtcatcggtcaggcggggctgccaatcttcatgggggcattcacattcgttggcctagctgtaacctgctccactgaggtaatttttgggcgtgtcatatccaatccaatccaacttcttggtgagatcggaggggtaacaacaatattcctagccattttgggtgttagccttgctacccttaccaccaacattgcagctaatgttgtggcaccagcaaatgcgctagtcaatcttagtccttcgaagttcacattcagaaggggagctattttcacagctttgcttggaattgcatttcagccatggaggcttcttagatcaagtgagagctttgtctacacatggcttgttggatattctgctctgttgggtccaattggaggcataattctcgcag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005215 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005886 GO:0006139 GO:0006206 GO:0006725 GO:0006807 GO:0006810 GO:0008150 GO:0008152 GO:0008655 GO:0009058 GO:0009112 GO:0009526 GO:0009536 GO:0009987 GO:0015205 GO:0015851 GO:0016020 GO:0018130 GO:0019438 GO:0019856 GO:0022857 GO:0031967 GO:0031975 GO:0034641 GO:0034654 GO:0043094 GO:0043100 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044249 GO:0044271 GO:0044281 GO:0044422 GO:0044424 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0046112 GO:0046483 GO:0051179 GO:0051234 GO:0055085 GO:0055086 GO:0071702 GO:0071704 GO:0071705 GO:0071944 GO:0072527 GO:0072528 GO:1901360 GO:1901362 GO:1901564 GO:1901566 GO:1901576

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Transp_cyt_pur

Protein Analysis

460

Amino Acids

49.89

Weight (kDa)

9.01

Isoelectric Point (pI)

43.67

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0015211)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G03555
fragaria_vesca	FvH4_6g17170
malus_domestica	MD12G1103200.v1.1
prunus_persica	Prupe.7G123300_v2.0.a1
pyrus_communis	pycom12g10160
rosa_chinensis	RchiOBHm_Chr3g0471261
rosa_laevigata	RLG00000024193
rosa_multiflora	Rmu_co8430243.1_g000001 Rmu_sc0009082.1_g000011
rosa_roxburghii	Rroxscaffold_6G00410160
rosa_rugosa	Rorug03G0116700
rosa_samantha	Rh3AG165800 Rh3BG191200 Rh3CG181500 Rh3DG184400
rosa_wichuraiana	Rw3G015610

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	1055
AccB1I	GGYRCC	2 cut(s)	4, 1192
AccB7I	CCANNNNNTGG	1 cut(s)	723
AccI	GTMKAC	1 cut(s)	1320
AciI	CCGC	1 cut(s)	995
AclWI	GGATC	6 cut(s)	230, 436, 492, 505, 518, 590
AcoI	YGGCCR	1 cut(s)	714
AcsI	RAATTY	1 cut(s)	215
AfaI	GTAC	2 cut(s)	138, 426
AfiI	CCNNNNNNNGG	7 cut(s)	331, 379, 490, 507, 659, 723, 1364
AgeI	ACCGGT	1 cut(s)	449
AgsI	TTSAA	3 cut(s)	192, 230, 621
AhlI	ACTAGT	1 cut(s)	430
AjiI	CACGTC	2 cut(s)	579, 789
AjnI	CCWGG	1 cut(s)	457
Alw21I	GWGCWC	1 cut(s)	523
Alw26I	GTCTC	3 cut(s)	20, 569, 645
AlwI	GGATC	6 cut(s)	230, 436, 492, 505, 518, 590
AoxI	GGCC	3 cut(s)	322, 714, 1033
ApeKI	GCWGC	3 cut(s)	413, 1000, 1178
ApoI	RAATTY	1 cut(s)	215
AsiGI	ACCGGT	1 cut(s)	449
AspLEI	GCGC	1 cut(s)	1207
AspS9I	GGNCC	3 cut(s)	277, 879, 1355
AsuC2I	CCSGG	2 cut(s)	295, 485
AsuHPI	GGTGA	5 cut(s)	169, 238, 439, 602, 1115
AsuII	TTCGAA	1 cut(s)	1226
AvaII	GGWCC	3 cut(s)	277, 879, 1355
BaeGI	GKGCMC	1 cut(s)	9
BamHI	GGATCC	1 cut(s)	510
BanI	GGYRCC	2 cut(s)	4, 1192
Bbv12I	GWGCWC	1 cut(s)	523
BbvI	GCAGC	3 cut(s)	425, 987, 1190
BccI	CCATC	2 cut(s)	39, 731
BcgI	CGANNNNNNTGC	1 cut(s)	1357
BciT130I	CCWGG	1 cut(s)	459
BclI	TGATCA	1 cut(s)	976
BcnI	CCSGG	2 cut(s)	295, 485
BcoDI	GTCTC	3 cut(s)	20, 569, 645
BcuI	ACTAGT	1 cut(s)	430
BfuAI	ACCTGC	1 cut(s)	1055
BglI	GCCNNNNNGGC	2 cut(s)	713, 1291
BisI	GCNGC	3 cut(s)	414, 1001, 1179
BlsI	GCNGC	3 cut(s)	415, 1002, 1180
BmcAI	AGTACT	1 cut(s)	426
Bme1390I	CCNGG	3 cut(s)	295, 459, 485
Bme18I	GGWCC	3 cut(s)	277, 879, 1355
BmgBI	CACGTC	2 cut(s)	579, 789
BmgT120I	GGNCC	3 cut(s)	277, 879, 1355
BmiI	GGNNCC	5 cut(s)	6, 512, 881, 1194, 1356
BmrFI	CCNGG	3 cut(s)	295, 459, 485
BmsI	GCATC	1 cut(s)	483
BplI	GAGNNNNNCTC	2 cut(s)	746, 778
Bpu14I	TTCGAA	1 cut(s)	1226
BpuEI	CTTGAG	2 cut(s)	245, 773
BpuMI	CCSGG	2 cut(s)	295, 485
BsaJI	CCNNGG	6 cut(s)	183, 373, 514, 546, 653, 1286
BsaWI	WCCGGW	1 cut(s)	449
Bsc4I	CCNNNNNNNGG	7 cut(s)	331, 379, 490, 507, 659, 723, 1364
Bse118I	RCCGGY	1 cut(s)	449
Bse3DI	GCAATG	1 cut(s)	1173
BseBI	CCWGG	1 cut(s)	459
BseDI	CCNNGG	6 cut(s)	183, 373, 514, 546, 653, 1286
BseGI	GGATG	5 cut(s)	31, 454, 665, 742, 863
BseLI	CCNNNNNNNGG	7 cut(s)	331, 379, 490, 507, 659, 723, 1364
BseMI	GCAATG	1 cut(s)	1173
BseMII	CTCAG	3 cut(s)	31, 553, 1047
BseRI	GAGGAG	1 cut(s)	298
BseSI	GKGCMC	1 cut(s)	9
BseXI	GCAGC	3 cut(s)	425, 987, 1190
BshFI	GGCC	3 cut(s)	324, 716, 1035
BshNI	GGYRCC	2 cut(s)	4, 1192
BshTI	ACCGGT	1 cut(s)	449
BsiHKAI	GWGCWC	1 cut(s)	523
BsiSI	CCGG	4 cut(s)	275, 295, 450, 485
BslFI	GGGAC	3 cut(s)	195, 419, 865
BslI	CCNNNNNNNGG	7 cut(s)	331, 379, 490, 507, 659, 723, 1364
BsmAI	GTCTC	3 cut(s)	20, 569, 645
BsmBI	CGTCTC	2 cut(s)	569, 645
BsmFI	GGGAC	3 cut(s)	195, 419, 865
BsmI	GAATGC	1 cut(s)	1019
BsnI	GGCC	3 cut(s)	324, 716, 1035
Bsp119I	TTCGAA	1 cut(s)	1226
Bsp1286I	GDGCHC	2 cut(s)	9, 523
Bsp1407I	TGTACA	1 cut(s)	136
Bsp143I	GATC	9 cut(s)	235, 256, 441, 497, 510, 582, 976, 1107, 1301
Bsp19I	CCATGG	4 cut(s)	183, 514, 653, 1286
BspACI	CCGC	1 cut(s)	995
BspANI	GGCC	3 cut(s)	324, 716, 1035
BspCNI	CTCAG	3 cut(s)	30, 552, 1048
BspLI	GGNNCC	5 cut(s)	6, 512, 881, 1194, 1356
BspMI	ACCTGC	1 cut(s)	1055
BspPI	GGATC	6 cut(s)	230, 436, 492, 505, 518, 590
BspT104I	TTCGAA	1 cut(s)	1226
BspT107I	GGYRCC	2 cut(s)	4, 1192
BsrDI	GCAATG	1 cut(s)	1173
BsrFI	RCCGGY	1 cut(s)	449
BsrGI	TGTACA	1 cut(s)	136
BssAI	RCCGGY	1 cut(s)	449
BssECI	CCNNGG	6 cut(s)	183, 373, 514, 546, 653, 1286
BssMI	GATC	9 cut(s)	235, 256, 441, 497, 510, 582, 976, 1107, 1301
BssT1I	CCWWGG	6 cut(s)	183, 373, 514, 546, 653, 1286
Bst2UI	CCWGG	1 cut(s)	459
Bst4CI	ACNGT	2 cut(s)	406, 928
Bst6I	CTCTTC	3 cut(s)	540, 640, 890
BstAUI	TGTACA	1 cut(s)	136
BstBI	TTCGAA	1 cut(s)	1226
BstDEI	CTNAG	6 cut(s)	17, 161, 539, 1056, 1217, 1298
BstDSI	CCRYGG	4 cut(s)	183, 514, 653, 1286
BstF5I	GGATG	5 cut(s)	31, 454, 665, 742, 863
BstHHI	GCGC	1 cut(s)	1207
BstKTI	GATC	9 cut(s)	238, 259, 444, 500, 513, 585, 979, 1110, 1304
BstMAI	GTCTC	3 cut(s)	20, 569, 645
BstMBI	GATC	9 cut(s)	235, 256, 441, 497, 510, 582, 976, 1107, 1301
BstMWI	GCNNNNNNNGC	4 cut(s)	271, 713, 929, 1291
BstNI	CCWGG	1 cut(s)	459
BstNSI	RCATGY	1 cut(s)	841
BstSCI	CCNGG	3 cut(s)	293, 457, 483
BstSLI	GKGCMC	1 cut(s)	9
BstV1I	GCAGC	3 cut(s)	425, 987, 1190
BstX2I	RGATCY	2 cut(s)	497, 510
BstXI	CCANNNNNNTGG	1 cut(s)	1100
BstYI	RGATCY	2 cut(s)	497, 510
BsuRI	GGCC	3 cut(s)	324, 716, 1035
BtgI	CCRYGG	4 cut(s)	183, 514, 653, 1286
BtrI	CACGTC	2 cut(s)	579, 789
BtsCI	GGATG	5 cut(s)	31, 454, 665, 742, 863
BtsI	GCAGTG	1 cut(s)	900
BtsIMutI	CAGTG	3 cut(s)	437, 900, 1053
BveI	ACCTGC	1 cut(s)	1055
CfoI	GCGC	1 cut(s)	1207
Cfr10I	RCCGGY	1 cut(s)	449
Cfr13I	GGNCC	3 cut(s)	277, 879, 1355
Csp6I	GTAC	2 cut(s)	137, 425
CspAI	ACCGGT	1 cut(s)	449
CspCI	CAANNNNNGTGG	4 cut(s)	805, 840, 1156, 1191
CviQI	GTAC	2 cut(s)	137, 425
DdeI	CTNAG	6 cut(s)	17, 161, 539, 1056, 1217, 1298
DpnI	GATC	9 cut(s)	237, 258, 443, 499, 512, 584, 978, 1109, 1303
DpnII	GATC	9 cut(s)	235, 256, 441, 497, 510, 582, 976, 1107, 1301
EaeI	YGGCCR	1 cut(s)	714
Eam1104I	CTCTTC	3 cut(s)	540, 640, 890
EarI	CTCTTC	3 cut(s)	540, 640, 890
Eco130I	CCWWGG	6 cut(s)	183, 373, 514, 546, 653, 1286
Eco47I	GGWCC	3 cut(s)	277, 879, 1355
EcoRII	CCWGG	1 cut(s)	457
EcoT14I	CCWWGG	6 cut(s)	183, 373, 514, 546, 653, 1286
ErhI	CCWWGG	6 cut(s)	183, 373, 514, 546, 653, 1286
Esp3I	CGTCTC	2 cut(s)	569, 645
FalI	AAGNNNNNCTT	2 cut(s)	619, 651
FaqI	GGGAC	3 cut(s)	195, 419, 865
FauI	CCCGC	1 cut(s)	988
FbaI	TGATCA	1 cut(s)	976
FblI	GTMKAC	1 cut(s)	1320
Fnu4HI	GCNGC	3 cut(s)	414, 1001, 1179
FokI	GGATG	5 cut(s)	18, 441, 652, 749, 850
Fsp4HI	GCNGC	3 cut(s)	414, 1001, 1179
GlaI	GCGC	1 cut(s)	1206
GluI	GCNGC	3 cut(s)	414, 1001, 1179
HaeIII	GGCC	3 cut(s)	324, 716, 1035
HapII	CCGG	4 cut(s)	275, 295, 450, 485
HhaI	GCGC	1 cut(s)	1207
Hin6I	GCGC	1 cut(s)	1205
HinP1I	GCGC	1 cut(s)	1205
HincII	GTYRAC	1 cut(s)	370
HindII	GTYRAC	1 cut(s)	370
HindIII	AAGCTT	1 cut(s)	913
HinfI	GANTC	1 cut(s)	741
HpaII	CCGG	4 cut(s)	275, 295, 450, 485
HphI	GGTGA	5 cut(s)	169, 238, 439, 602, 1115
Hpy166II	GTNNAC	3 cut(s)	370, 1233, 1321
Hpy188I	TCNGA	5 cut(s)	84, 542, 746, 1112, 1241
Hpy8I	GTNNAC	3 cut(s)	370, 1233, 1321
Hpy99I	CGWCG	1 cut(s)	257
HpyAV	CCTTC	4 cut(s)	614, 903, 1233, 1236
HpyCH4III	ACNGT	2 cut(s)	406, 928
HpyCH4IV	ACGT	2 cut(s)	578, 788
HpyCH4V	TGCA	4 cut(s)	47, 905, 1178, 1277
HpyF10VI	GCNNNNNNNGC	4 cut(s)	271, 713, 929, 1291
HpyF3I	CTNAG	6 cut(s)	17, 161, 539, 1056, 1217, 1298
HpySE526I	ACGT	2 cut(s)	578, 788
HspAI	GCGC	1 cut(s)	1205
Ksp22I	TGATCA	1 cut(s)	976
Kzo9I	GATC	9 cut(s)	235, 256, 441, 497, 510, 582, 976, 1107, 1301
LmnI	GCTCC	3 cut(s)	772, 1055, 1247
Lsp1109I	GCAGC	3 cut(s)	425, 987, 1190
LweI	GCATC	1 cut(s)	483
MaeII	ACGT	2 cut(s)	578, 788
MaeIII	GTNAC	2 cut(s)	1042, 1117
MalI	GATC	9 cut(s)	237, 258, 443, 499, 512, 584, 978, 1109, 1303
MboI	GATC	9 cut(s)	235, 256, 441, 497, 510, 582, 976, 1107, 1301
MboII	GAAGA	4 cut(s)	527, 627, 877, 1000
MfeI	CAATTG	1 cut(s)	1359
MflI	RGATCY	2 cut(s)	497, 510
MhlI	GDGCHC	2 cut(s)	9, 523
MmeI	TCCRAC	2 cut(s)	1117, 1315
MseI	TTAA	1 cut(s)	110
MslI	CAYNNNNRTG	1 cut(s)	182
MspI	CCGG	4 cut(s)	275, 295, 450, 485
MspR9I	CCNGG	3 cut(s)	295, 459, 485
MunI	CAATTG	1 cut(s)	1359
Mva1269I	GAATGC	1 cut(s)	1019
MvaI	CCWGG	1 cut(s)	459
MwoI	GCNNNNNNNGC	4 cut(s)	271, 713, 929, 1291
NciI	CCSGG	2 cut(s)	295, 485
NcoI	CCATGG	4 cut(s)	183, 514, 653, 1286
NdeII	GATC	9 cut(s)	235, 256, 441, 497, 510, 582, 976, 1107, 1301
NlaIV	GGNNCC	5 cut(s)	6, 512, 881, 1194, 1356
NspI	RCATGY	1 cut(s)	841
NspV	TTCGAA	1 cut(s)	1226
PctI	GAATGC	1 cut(s)	1019
PfeI	GAWTC	1 cut(s)	741
PflMI	CCANNNNNTGG	1 cut(s)	723
PinAI	ACCGGT	1 cut(s)	449
PkrI	GCNGC	3 cut(s)	415, 1002, 1180
Psp6I	CCWGG	1 cut(s)	457
PspGI	CCWGG	1 cut(s)	457
PspN4I	GGNNCC	5 cut(s)	6, 512, 881, 1194, 1356
PspPI	GGNCC	3 cut(s)	277, 879, 1355
PsuI	RGATCY	2 cut(s)	497, 510
RsaI	GTAC	2 cut(s)	138, 426
RsaNI	GTAC	2 cut(s)	137, 425
RseI	CAYNNNNRTG	1 cut(s)	182
SaqAI	TTAA	1 cut(s)	110
SatI	GCNGC	3 cut(s)	414, 1001, 1179
Sau3AI	GATC	9 cut(s)	235, 256, 441, 497, 510, 582, 976, 1107, 1301
Sau96I	GGNCC	3 cut(s)	277, 879, 1355
ScaI	AGTACT	1 cut(s)	426
ScrFI	CCNGG	3 cut(s)	295, 459, 485
SduI	GDGCHC	2 cut(s)	9, 523
SfaNI	GCATC	1 cut(s)	483
SfuI	TTCGAA	1 cut(s)	1226
SinI	GGWCC	3 cut(s)	277, 879, 1355
SmiMI	CAYNNNNRTG	1 cut(s)	182
SmlI	CTYRAG	2 cut(s)	260, 752
SmoI	CTYRAG	2 cut(s)	260, 752
SpeI	ACTAGT	1 cut(s)	430
SsiI	CCGC	1 cut(s)	995
SspI	AATATT	1 cut(s)	1128
StyD4I	CCNGG	3 cut(s)	293, 457, 483
StyI	CCWWGG	6 cut(s)	183, 373, 514, 546, 653, 1286
TaaI	ACNGT	2 cut(s)	406, 928
TaiI	ACGT	2 cut(s)	581, 791
TaqI	TCGA	2 cut(s)	219, 1226
TaqII	GACCGA	1 cut(s)	977
TatI	WGTACW	2 cut(s)	136, 424
TfiI	GAWTC	1 cut(s)	741
Tru1I	TTAA	1 cut(s)	110
Tru9I	TTAA	1 cut(s)	110
TscAI	CASTG	3 cut(s)	444, 907, 1060
TseI	GCWGC	3 cut(s)	413, 1000, 1178
TspDTI	ATGAA	2 cut(s)	14, 1000
TspRI	CASTG	3 cut(s)	444, 907, 1060
Van91I	CCANNNNNTGG	1 cut(s)	723
VpaK11BI	GGWCC	3 cut(s)	277, 879, 1355
XapI	RAATTY	1 cut(s)	215
XceI	RCATGY	1 cut(s)	841
XmiI	GTMKAC	1 cut(s)	1320
ZrmI	AGTACT	1 cut(s)	426

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.