Rorug03G0116700

PLATZ transcription factor

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000003
OG0002320
Physical Location & Seq
Forward (+)
9481376 .. 9483899
2524 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug03G0116700.1

Sequence Viewer

Length: 894 bp
ATGGCGTCGGTGGGCCAGGCCGCGGAGGTGTACGAGCCGAAGCCACTCCAAGTCTGGCGAGCTCTGATGAACTGGTTGGGCTTCTTCTTCCAGATCATCGTTCAGATCCTCAGAGGCGCCCCCTGCCTCGCTCATTTGCTGTCGTACGTTCCTCTCCTCGCTTCTTCTTCTTCTTTCAGGCCCTTGCCTGTCAGTGAAATCCCTCTCAACGACACGTCGTCCTCCGCCCACGCCAACCTCGAAAACGGCGTCGTAACCGACGATCACCGCCTTCAAAAGCTCACGGTAGTTCTTGACTTAGATGAGACGCTAGTGTGTGCGTACGAAACATCTTCCTTGCCTGCTATTGTTCGAACTCAAGCAACAGATGCTGGGTTGAAGTGGTTTGAGATAGAATGTGTATCTTCAGACAAGTCTGATGGTAAACCGAAGATCAGTTATGTGACAGTGTTTGAACGTCCTGGTTTGCACGAGTTCTTGAAACGGATCTGTGAATTTGCTGATCTTGTCCTATTTACTGCTGGTCTTGAAGGTTATGCTAGACCACTTGTTGACAGAATTGATTTGGAGAACAGATTTAAGCTTCGTCTTTATCGGCCTGCTACAGTTACCACGGAAAACCGGGATCATGTGAAAGATCTGTCTTGTATATCGAAAGATCTCTGTCGAATTGTTATTGTTGACAACAACCCATTTAGTTTTCTGCTGCAACCGGTGAATGGAGTTCCATGTATTCCGTTTTCTGCTGGACATCCATATGATGACCAGCTCTTGGAGGTGCTGCTTCCACTCCTCCAGCACCTCGCCCAGCAAAAGGATGTGAGGCCTGTGCTTTATGAGAGATTCCACATGCCCGAATGGTTTCAAATGCATGGAATTACTATTTCTGGTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
PLATZ

Protein Analysis

297

Amino Acids

33.48

Weight (kDa)

5.59

Isoelectric Point (pI)

34.65

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
NIF PF03031 94 - 275 5.6e-42 NLI interacting factor-like phosphatase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 116
AccB7I CCANNNNNTGG 1 cut(s) 772
AccII CGCG 1 cut(s) 23
AciI CCGC 4 cut(s) 21, 23, 225, 268
AclWI GGATC 3 cut(s) 100, 494, 633
AcsI RAATTY 1 cut(s) 494
AcuI CTGAAG 1 cut(s) 390
AcyI GRCGYC 3 cut(s) 5, 117, 249
AfaI GTAC 3 cut(s) 32, 146, 323
AfiI CCNNNNNNNGG 4 cut(s) 22, 719, 772, 814
AflIII ACRYGT 1 cut(s) 213
AgeI ACCGGT 1 cut(s) 712
AgsI TTSAA 6 cut(s) 275, 379, 455, 481, 530, 866
AhdI GACNNNNNGTC 1 cut(s) 217
AjiI CACGTC 1 cut(s) 216
AjnI CCWGG 2 cut(s) 15, 460
AluBI AGCT 4 cut(s) 62, 280, 583, 769
AluI AGCT 4 cut(s) 62, 280, 583, 769
Alw21I GWGCWC 1 cut(s) 64
Alw26I GTCTC 1 cut(s) 299
AlwI GGATC 3 cut(s) 100, 494, 633
AlwNI CAGNNNCTG 1 cut(s) 371
AoxI GGCC 5 cut(s) 13, 18, 179, 596, 824
ApeKI GCWGC 2 cut(s) 706, 781
ApoI RAATTY 1 cut(s) 494
ArsI GACNNNNNNTTYG 2 cut(s) 234, 266
AsiGI ACCGGT 1 cut(s) 712
Asp700I GAANNNNTTC 1 cut(s) 861
AspLEI GCGC 1 cut(s) 119
AspS9I GGNCC 2 cut(s) 13, 180
AsuC2I CCSGG 1 cut(s) 623
AsuHPI GGTGA 2 cut(s) 257, 727
AsuII TTCGAA 1 cut(s) 352
BanI GGYRCC 1 cut(s) 116
BanII GRGCYC 1 cut(s) 64
BauI CACGAG 1 cut(s) 470
Bbv12I GWGCWC 1 cut(s) 64
BbvI GCAGC 2 cut(s) 693, 768
BccI CCATC 1 cut(s) 413
BceAI ACGGC 1 cut(s) 262
BciT130I CCWGG 2 cut(s) 17, 462
BcnI CCSGG 1 cut(s) 623
BcoDI GTCTC 1 cut(s) 299
BfaI CTAG 2 cut(s) 311, 540
BfmI CTRYAG 1 cut(s) 603
BfoI RGCGCY 1 cut(s) 120
BglII AGATCT 2 cut(s) 637, 658
BisI GCNGC 3 cut(s) 21, 707, 782
BlsI GCNGC 3 cut(s) 22, 708, 783
Bme1390I CCNGG 3 cut(s) 17, 462, 623
BmeRI GACNNNNNGTC 1 cut(s) 217
BmgBI CACGTC 1 cut(s) 216
BmgT120I GGNCC 2 cut(s) 13, 180
BmiI GGNNCC 1 cut(s) 118
BmrFI CCNGG 3 cut(s) 17, 462, 623
BmsI GCATC 1 cut(s) 358
BpmI CTGGAG 1 cut(s) 779
Bpu14I TTCGAA 1 cut(s) 352
BpuEI CTTGAG 1 cut(s) 342
BpuMI CCSGG 1 cut(s) 623
BsaHI GRCGYC 3 cut(s) 5, 117, 249
BsaJI CCNNGG 2 cut(s) 21, 612
BsaWI WCCGGW 1 cut(s) 712
Bsc4I CCNNNNNNNGG 4 cut(s) 22, 719, 772, 814
Bse118I RCCGGY 1 cut(s) 712
Bse1I ACTGG 1 cut(s) 77
BseBI CCWGG 2 cut(s) 17, 462
BseDI CCNNGG 2 cut(s) 21, 612
BseGI GGATG 2 cut(s) 751, 823
BseLI CCNNNNNNNGG 4 cut(s) 22, 719, 772, 814
BseMII CTCAG 1 cut(s) 124
BseNI ACTGG 1 cut(s) 77
BseRI GAGGAG 2 cut(s) 146, 782
BseXI GCAGC 2 cut(s) 693, 768
BseYI CCCAGC 2 cut(s) 371, 807
Bsh1236I CGCG 1 cut(s) 23
BshFI GGCC 5 cut(s) 15, 20, 181, 598, 826
BshNI GGYRCC 1 cut(s) 116
BshTI ACCGGT 1 cut(s) 712
BsiHKAI GWGCWC 1 cut(s) 64
BsiSI CCGG 2 cut(s) 622, 713
BsiWI CGTACG 2 cut(s) 144, 321
BslI CCNNNNNNNGG 4 cut(s) 22, 719, 772, 814
BsmAI GTCTC 1 cut(s) 299
BsmBI CGTCTC 1 cut(s) 299
BsnI GGCC 5 cut(s) 15, 20, 181, 598, 826
Bsp119I TTCGAA 1 cut(s) 352
Bsp1286I GDGCHC 1 cut(s) 64
Bsp143I GATC 9 cut(s) 93, 105, 262, 432, 486, 502, 625, 637, 658
BspACI CCGC 4 cut(s) 21, 23, 225, 268
BspANI GGCC 5 cut(s) 15, 20, 181, 598, 826
BspCNI CTCAG 1 cut(s) 123
BspFNI CGCG 1 cut(s) 23
BspLI GGNNCC 1 cut(s) 118
BspPI GGATC 3 cut(s) 100, 494, 633
BspT104I TTCGAA 1 cut(s) 352
BspT107I GGYRCC 1 cut(s) 116
BsrFI RCCGGY 1 cut(s) 712
BsrI ACTGG 1 cut(s) 77
BssAI RCCGGY 1 cut(s) 712
BssECI CCNNGG 2 cut(s) 21, 612
BssMI GATC 9 cut(s) 93, 105, 262, 432, 486, 502, 625, 637, 658
BssNI GRCGYC 3 cut(s) 5, 117, 249
BssSI CACGAG 1 cut(s) 470
Bst2BI CACGAG 1 cut(s) 470
Bst2UI CCWGG 2 cut(s) 17, 462
Bst4CI ACNGT 3 cut(s) 286, 448, 607
BstACI GRCGYC 3 cut(s) 5, 117, 249
BstAPI GCANNNNNTGC 1 cut(s) 368
BstBI TTCGAA 1 cut(s) 352
BstC8I GCNNGC 3 cut(s) 60, 342, 600
BstDEI CTNAG 2 cut(s) 110, 298
BstDSI CCRYGG 2 cut(s) 21, 612
BstF5I GGATG 2 cut(s) 751, 823
BstFNI CGCG 1 cut(s) 23
BstH2I RGCGCY 1 cut(s) 120
BstHHI GCGC 1 cut(s) 119
BstKTI GATC 9 cut(s) 96, 108, 265, 435, 489, 505, 628, 640, 661
BstMAI GTCTC 1 cut(s) 299
BstMBI GATC 9 cut(s) 93, 105, 262, 432, 486, 502, 625, 637, 658
BstMWI GCNNNNNNNGC 2 cut(s) 123, 368
BstNI CCWGG 2 cut(s) 17, 462
BstNSI RCATGY 1 cut(s) 853
BstSCI CCNGG 3 cut(s) 15, 460, 621
BstSFI CTRYAG 1 cut(s) 603
BstUI CGCG 1 cut(s) 23
BstV1I GCAGC 2 cut(s) 693, 768
BstX2I RGATCY 4 cut(s) 105, 486, 637, 658
BstYI RGATCY 4 cut(s) 105, 486, 637, 658
BsuRI GGCC 5 cut(s) 15, 20, 181, 598, 826
BtgI CCRYGG 2 cut(s) 21, 612
BtrI CACGTC 1 cut(s) 216
BtsCI GGATG 2 cut(s) 751, 823
BtsIMutI CAGTG 2 cut(s) 199, 453
Cac8I GCNNGC 3 cut(s) 60, 342, 600
CaiI CAGNNNCTG 1 cut(s) 371
CfoI GCGC 1 cut(s) 119
Cfr10I RCCGGY 1 cut(s) 712
Cfr13I GGNCC 2 cut(s) 13, 180
Cfr42I CCGCGG 1 cut(s) 24
CseI GACGC 2 cut(s) 238, 316
Csp6I GTAC 3 cut(s) 31, 145, 322
CspAI ACCGGT 1 cut(s) 712
CviAII CATG 4 cut(s) 629, 729, 850, 872
CviQI GTAC 3 cut(s) 31, 145, 322
DdeI CTNAG 2 cut(s) 110, 298
DinI GGCGCC 1 cut(s) 118
DpnI GATC 9 cut(s) 95, 107, 264, 434, 488, 504, 627, 639, 660
DpnII GATC 9 cut(s) 93, 105, 262, 432, 486, 502, 625, 637, 658
DriI GACNNNNNGTC 1 cut(s) 217
Eam1105I GACNNNNNGTC 1 cut(s) 217
EciI GGCGGA 1 cut(s) 214
Ecl136II GAGCTC 1 cut(s) 62
Eco147I AGGCCT 1 cut(s) 826
Eco24I GRGCYC 1 cut(s) 64
Eco53kI GAGCTC 1 cut(s) 62
Eco57I CTGAAG 1 cut(s) 390
EcoICRI GAGCTC 1 cut(s) 62
EcoO109I RGGNCCY 1 cut(s) 180
EcoRII CCWGG 2 cut(s) 15, 460
EcoT22I ATGCAT 1 cut(s) 873
EcoT38I GRGCYC 1 cut(s) 64
EgeI GGCGCC 1 cut(s) 118
EheI GGCGCC 1 cut(s) 118
Esp3I CGTCTC 1 cut(s) 299
FaeI CATG 4 cut(s) 632, 732, 853, 875
FatI CATG 4 cut(s) 628, 728, 849, 871
FauNDI CATATG 1 cut(s) 757
Fnu4HI GCNGC 3 cut(s) 21, 707, 782
FokI GGATG 2 cut(s) 738, 830
FriOI GRGCYC 1 cut(s) 64
Fsp4HI GCNGC 3 cut(s) 21, 707, 782
FspBI CTAG 2 cut(s) 311, 540
GlaI GCGC 1 cut(s) 118
GluI GCNGC 3 cut(s) 21, 707, 782
GsaI CCCAGC 2 cut(s) 375, 811
GsuI CTGGAG 1 cut(s) 779
HaeII RGCGCY 1 cut(s) 120
HaeIII GGCC 5 cut(s) 15, 20, 181, 598, 826
HapII CCGG 2 cut(s) 622, 713
HgaI GACGC 2 cut(s) 238, 316
HhaI GCGC 1 cut(s) 119
Hin1I GRCGYC 3 cut(s) 5, 117, 249
Hin1II CATG 4 cut(s) 632, 732, 853, 875
Hin6I GCGC 1 cut(s) 117
HinP1I GCGC 1 cut(s) 117
HincII GTYRAC 2 cut(s) 553, 682
HindII GTYRAC 2 cut(s) 553, 682
HindIII AAGCTT 1 cut(s) 581
HinfI GANTC 1 cut(s) 843
HpaII CCGG 2 cut(s) 622, 713
HphI GGTGA 2 cut(s) 257, 727
Hpy166II GTNNAC 4 cut(s) 31, 425, 553, 682
Hpy188I TCNGA 5 cut(s) 66, 105, 113, 409, 418
Hpy188III TCNNGA 4 cut(s) 91, 293, 478, 527
Hpy8I GTNNAC 4 cut(s) 31, 425, 553, 682
Hpy99I CGWCG 4 cut(s) 10, 220, 254, 263
HpyAV CCTTC 2 cut(s) 281, 524
HpyCH4III ACNGT 3 cut(s) 286, 448, 607
HpyCH4IV ACGT 3 cut(s) 147, 215, 457
HpyCH4V TGCA 3 cut(s) 469, 709, 871
HpyF10VI GCNNNNNNNGC 2 cut(s) 123, 368
HpyF3I CTNAG 2 cut(s) 110, 298
HpySE526I ACGT 3 cut(s) 147, 215, 457
Hsp92I GRCGYC 3 cut(s) 5, 117, 249
Hsp92II CATG 4 cut(s) 632, 732, 853, 875
HspAI GCGC 1 cut(s) 117
KasI GGCGCC 1 cut(s) 116
KspI CCGCGG 1 cut(s) 24
Kzo9I GATC 9 cut(s) 93, 105, 262, 432, 486, 502, 625, 637, 658
Lsp1109I GCAGC 2 cut(s) 693, 768
LweI GCATC 1 cut(s) 358
MaeI CTAG 2 cut(s) 311, 540
MaeII ACGT 3 cut(s) 147, 215, 457
MaeIII GTNAC 3 cut(s) 253, 442, 607
MalI GATC 9 cut(s) 95, 107, 264, 434, 488, 504, 627, 639, 660
MboI GATC 9 cut(s) 93, 105, 262, 432, 486, 502, 625, 637, 658
MboII GAAGA 8 cut(s) 76, 79, 156, 159, 162, 324, 396, 442
MflI RGATCY 4 cut(s) 105, 486, 637, 658
MhlI GDGCHC 1 cut(s) 64
MluCI AATT 4 cut(s) 494, 558, 669, 876
Mly113I GGCGCC 1 cut(s) 117
Mph1103I ATGCAT 1 cut(s) 873
MroXI GAANNNNTTC 1 cut(s) 861
MseI TTAA 1 cut(s) 579
MslI CAYNNNNRTG 1 cut(s) 756
MspA1I CMGCKG 1 cut(s) 23
MspI CCGG 2 cut(s) 622, 713
MspR9I CCNGG 3 cut(s) 17, 462, 623
MvaI CCWGG 2 cut(s) 17, 462
MvnI CGCG 1 cut(s) 23
MwoI GCNNNNNNNGC 2 cut(s) 123, 368
NarI GGCGCC 1 cut(s) 117
NciI CCSGG 1 cut(s) 623
NdeI CATATG 1 cut(s) 757
NdeII GATC 9 cut(s) 93, 105, 262, 432, 486, 502, 625, 637, 658
NlaIII CATG 4 cut(s) 632, 732, 853, 875
NlaIV GGNNCC 1 cut(s) 118
NmuCI GTSAC 1 cut(s) 442
NsiI ATGCAT 1 cut(s) 873
NspI RCATGY 1 cut(s) 853
NspV TTCGAA 1 cut(s) 352
PceI AGGCCT 1 cut(s) 826
PcsI WCGNNNNNNNCGW 3 cut(s) 237, 246, 258
PdmI GAANNNNTTC 1 cut(s) 861
PfeI GAWTC 1 cut(s) 843
Pfl23II CGTACG 2 cut(s) 144, 321
PflMI CCANNNNNTGG 1 cut(s) 772
PinAI ACCGGT 1 cut(s) 712
PkrI GCNGC 3 cut(s) 22, 708, 783
PluTI GGCGCC 1 cut(s) 120
Psp124BI GAGCTC 1 cut(s) 64
Psp6I CCWGG 2 cut(s) 15, 460
PspFI CCCAGC 2 cut(s) 371, 807
PspGI CCWGG 2 cut(s) 15, 460
PspLI CGTACG 2 cut(s) 144, 321
PspN4I GGNNCC 1 cut(s) 118
PspPI GGNCC 2 cut(s) 13, 180
PstNI CAGNNNCTG 1 cut(s) 371
PsuI RGATCY 4 cut(s) 105, 486, 637, 658
RsaI GTAC 3 cut(s) 32, 146, 323
RsaNI GTAC 3 cut(s) 31, 145, 322
RseI CAYNNNNRTG 1 cut(s) 756
SacI GAGCTC 1 cut(s) 64
SacII CCGCGG 1 cut(s) 24
SaqAI TTAA 1 cut(s) 579
SatI GCNGC 3 cut(s) 21, 707, 782
Sau3AI GATC 9 cut(s) 93, 105, 262, 432, 486, 502, 625, 637, 658
Sau96I GGNCC 2 cut(s) 13, 180
ScrFI CCNGG 3 cut(s) 17, 462, 623
SduI GDGCHC 1 cut(s) 64
SfaNI GCATC 1 cut(s) 358
SfcI CTRYAG 1 cut(s) 603
SfoI GGCGCC 1 cut(s) 118
Sfr303I CCGCGG 1 cut(s) 24
SfuI TTCGAA 1 cut(s) 352
SgrBI CCGCGG 1 cut(s) 24
SmiMI CAYNNNNRTG 1 cut(s) 756
SmlI CTYRAG 1 cut(s) 357
SmoI CTYRAG 1 cut(s) 357
Sse9I AATT 4 cut(s) 494, 558, 669, 876
SseBI AGGCCT 1 cut(s) 826
SsiI CCGC 4 cut(s) 21, 23, 225, 268
SspDI GGCGCC 1 cut(s) 116
SspMI CTAG 2 cut(s) 311, 540
SstI GAGCTC 1 cut(s) 64
StuI AGGCCT 1 cut(s) 826
StyD4I CCNGG 3 cut(s) 15, 460, 621
TaaI ACNGT 3 cut(s) 286, 448, 607
TaiI ACGT 3 cut(s) 150, 218, 460
TaqI TCGA 4 cut(s) 240, 352, 653, 667
TasI AATT 4 cut(s) 494, 558, 669, 876
TauI GCSGC 1 cut(s) 23
TfiI GAWTC 1 cut(s) 843
Tru1I TTAA 1 cut(s) 579
Tru9I TTAA 1 cut(s) 579
TscAI CASTG 2 cut(s) 199, 453
TseFI GTSAC 1 cut(s) 442
TseI GCWGC 2 cut(s) 706, 781
Tsp45I GTSAC 1 cut(s) 442
TspDTI ATGAA 1 cut(s) 83
TspGWI ACGGA 3 cut(s) 499, 629, 726
TspRI CASTG 2 cut(s) 199, 453
Van91I CCANNNNNTGG 1 cut(s) 772
XapI RAATTY 1 cut(s) 494
XceI RCATGY 1 cut(s) 853
XcmI CCANNNNNNNNNTGG 1 cut(s) 51
XmnI GAANNNNTTC 1 cut(s) 861
XspI CTAG 2 cut(s) 311, 540
Zsp2I ATGCAT 1 cut(s) 873
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.