AT2G27930

PLATZ transcription factor

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
2
OG0002320
Physical Location & Seq
Forward (+)
11891998 .. 11893787
1790 bp
Loading structure...
UTR
Exon/CDS
Intron
AT2G27930.1

Sequence Viewer

Length: 570 bp
ATGGAGGAGCCGAAATGGCTCGAAGGTCTCTTAAGAACAAACTTCTTCAGCATTTGCCCTCGACATCGCGAGACACCGCGAAATGAGTGCAACATGTTCTGTCTCTCCTGTCAAAACGCTGCGTTTTGCTTCTACTGCCGCTCCTCCTTTCACATTGATCATCCCGTCCTTCAGATAAGAAGATCGTCGTATCATGATGTGGTGAGAGTATCGGAGATAGAGAATGCATTGGACATAAGAGGAGTGCAAACTTATGTCATCAATAGCGCGAGGGTTCTCTTCTTAAACGAGAGACCTCAGCCTAAGAACTCCTCCCATGGTGCCGCCTCCTCCACTCCGAAAACCATGTCCTACTTCTGTGAGACATGTTGCAGAACCCTTCTTGATCCCTTTCGCTTCTGTTCCTTGGGTTGCAAGGTTGAAGGAATGAGGAAGAATAAGGAAGAGGAAGAAGAAAGATTGCGTAAAGAAAGACAACAAGAAACGCACAAAGGCACGCATCCTCCAACTCATACCTCTAATTCTAGGCGACGAAAAGGCATTCCTCATAGAGCTCCTTTTGCCTCCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
PLATZ

Protein Analysis

189

Amino Acids

22.04

Weight (kDa)

9.14

Isoelectric Point (pI)

67.97

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PLATZ PF04640 60 - 140 1.3e-30 PLATZ transcription factor
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 320
AccBSI CCGCTC 1 cut(s) 141
AccII CGCG 3 cut(s) 69, 79, 269
AciI CCGC 3 cut(s) 77, 139, 324
AclWI GGATC 1 cut(s) 380
AcuI CTGAAG 2 cut(s) 31, 155
AflII CTTAAG 1 cut(s) 31
AflIII ACRYGT 2 cut(s) 93, 365
AgsI TTSAA 1 cut(s) 422
AluBI AGCT 1 cut(s) 554
AluI AGCT 1 cut(s) 554
Alw21I GWGCWC 1 cut(s) 556
Alw26I GTCTC 5 cut(s) 32, 65, 107, 286, 356
AlwI GGATC 1 cut(s) 380
ApeKI GCWGC 1 cut(s) 119
ArsI GACNNNNNNTTYG 2 cut(s) 332, 364
AspLEI GCGC 1 cut(s) 269
AsuHPI GGTGA 1 cut(s) 214
BanI GGYRCC 1 cut(s) 320
BanII GRGCYC 1 cut(s) 556
Bbv12I GWGCWC 1 cut(s) 556
BbvCI CCTCAGC 1 cut(s) 297
BbvI GCAGC 1 cut(s) 106
BcgI CGANNNNNNTGC 2 cut(s) 69, 103
BclI TGATCA 1 cut(s) 157
BcoDI GTCTC 5 cut(s) 32, 65, 107, 286, 356
BfaI CTAG 1 cut(s) 525
BfrI CTTAAG 1 cut(s) 31
BglI GCCNNNNNGGC 1 cut(s) 16
BisI GCNGC 3 cut(s) 120, 139, 324
BlsI GCNGC 3 cut(s) 121, 140, 325
BmiI GGNNCC 2 cut(s) 9, 322
BmsI GCATC 1 cut(s) 508
Bpu10I CCTNAGC 1 cut(s) 297
BsaI GGTCTC 2 cut(s) 32, 286
BsaJI CCNNGG 2 cut(s) 316, 405
BsaXI ACNNNNNCTCC 4 cut(s) 125, 155, 487, 517
BseDI CCNNGG 2 cut(s) 316, 405
BseGI GGATG 2 cut(s) 160, 499
BseMII CTCAG 1 cut(s) 311
BseRI GAGGAG 5 cut(s) 20, 133, 255, 301, 319
BseXI GCAGC 1 cut(s) 106
Bsh1236I CGCG 3 cut(s) 69, 79, 269
BshNI GGYRCC 1 cut(s) 320
BsiHKAI GWGCWC 1 cut(s) 556
BsmAI GTCTC 5 cut(s) 32, 65, 107, 286, 356
BsmI GAATGC 2 cut(s) 229, 540
Bso31I GGTCTC 2 cut(s) 32, 286
Bsp1286I GDGCHC 1 cut(s) 556
Bsp143I GATC 3 cut(s) 157, 182, 385
Bsp19I CCATGG 1 cut(s) 316
Bsp68I TCGCGA 1 cut(s) 69
BspACI CCGC 3 cut(s) 77, 139, 324
BspCNI CTCAG 1 cut(s) 310
BspFNI CGCG 3 cut(s) 69, 79, 269
BspHI TCATGA 1 cut(s) 193
BspLI GGNNCC 2 cut(s) 9, 322
BspPI GGATC 1 cut(s) 380
BspT107I GGYRCC 1 cut(s) 320
BspTI CTTAAG 1 cut(s) 31
BspTNI GGTCTC 2 cut(s) 32, 286
BsrBI CCGCTC 1 cut(s) 141
BssECI CCNNGG 2 cut(s) 316, 405
BssMI GATC 3 cut(s) 157, 182, 385
BssT1I CCWWGG 2 cut(s) 316, 405
Bst6I CTCTTC 2 cut(s) 284, 438
BstAFI CTTAAG 1 cut(s) 31
BstC8I GCNNGC 1 cut(s) 497
BstDEI CTNAG 2 cut(s) 297, 303
BstDSI CCRYGG 1 cut(s) 316
BstF5I GGATG 2 cut(s) 160, 499
BstFNI CGCG 3 cut(s) 69, 79, 269
BstHHI GCGC 1 cut(s) 269
BstKTI GATC 3 cut(s) 160, 185, 388
BstMAI GTCTC 5 cut(s) 32, 65, 107, 286, 356
BstMBI GATC 3 cut(s) 157, 182, 385
BstMWI GCNNNNNNNGC 3 cut(s) 16, 135, 560
BstNSI RCATGY 2 cut(s) 97, 369
BstUI CGCG 3 cut(s) 69, 79, 269
BstV1I GCAGC 1 cut(s) 106
BtgI CCRYGG 1 cut(s) 316
BtgZI GCGATG 1 cut(s) 50
BtsCI GGATG 2 cut(s) 160, 499
BtuMI TCGCGA 1 cut(s) 69
Cac8I GCNNGC 1 cut(s) 497
CciI TCATGA 1 cut(s) 193
CfoI GCGC 1 cut(s) 269
CviAII CATG 5 cut(s) 94, 194, 317, 346, 366
CviJI RGCY 4 cut(s) 10, 19, 301, 554
CviKI_1 RGCY 4 cut(s) 10, 19, 301, 554
DdeI CTNAG 2 cut(s) 297, 303
DpnI GATC 3 cut(s) 159, 184, 387
DpnII GATC 3 cut(s) 157, 182, 385
Eam1104I CTCTTC 2 cut(s) 284, 438
EarI CTCTTC 2 cut(s) 284, 438
Ecl136II GAGCTC 1 cut(s) 554
Eco130I CCWWGG 2 cut(s) 316, 405
Eco24I GRGCYC 1 cut(s) 556
Eco31I GGTCTC 2 cut(s) 32, 286
Eco53kI GAGCTC 1 cut(s) 554
Eco57I CTGAAG 2 cut(s) 31, 155
EcoICRI GAGCTC 1 cut(s) 554
EcoT14I CCWWGG 2 cut(s) 316, 405
EcoT22I ATGCAT 1 cut(s) 229
EcoT38I GRGCYC 1 cut(s) 556
ErhI CCWWGG 2 cut(s) 316, 405
FaeI CATG 5 cut(s) 97, 197, 320, 349, 369
FaiI YATR 9 cut(s) 95, 195, 236, 255, 318, 347, 367, 513, 549
FatI CATG 5 cut(s) 93, 193, 316, 345, 365
FbaI TGATCA 1 cut(s) 157
Fnu4HI GCNGC 3 cut(s) 120, 139, 324
FokI GGATG 2 cut(s) 147, 486
FriOI GRGCYC 1 cut(s) 556
Fsp4HI GCNGC 3 cut(s) 120, 139, 324
FspBI CTAG 1 cut(s) 525
GlaI GCGC 1 cut(s) 268
GluI GCNGC 3 cut(s) 120, 139, 324
HhaI GCGC 1 cut(s) 269
Hin1II CATG 5 cut(s) 97, 197, 320, 349, 369
Hin6I GCGC 1 cut(s) 267
HinP1I GCGC 1 cut(s) 267
HphI GGTGA 1 cut(s) 214
Hpy188I TCNGA 3 cut(s) 174, 214, 339
Hpy188III TCNNGA 3 cut(s) 68, 194, 383
Hpy99I CGWCG 2 cut(s) 190, 534
HpyAV CCTTC 4 cut(s) 17, 179, 389, 416
HpyCH4V TGCA 5 cut(s) 90, 227, 247, 372, 414
HpyF10VI GCNNNNNNNGC 3 cut(s) 16, 135, 560
HpyF3I CTNAG 2 cut(s) 297, 303
Hsp92II CATG 5 cut(s) 97, 197, 320, 349, 369
HspAI GCGC 1 cut(s) 267
Ksp22I TGATCA 1 cut(s) 157
Kzo9I GATC 3 cut(s) 157, 182, 385
LmnI GCTCC 3 cut(s) 7, 146, 559
LpnPI CCDG 1 cut(s) 121
Lsp1109I GCAGC 1 cut(s) 106
LweI GCATC 1 cut(s) 508
MaeI CTAG 1 cut(s) 525
MalI GATC 3 cut(s) 159, 184, 387
MbiI CCGCTC 1 cut(s) 141
MboI GATC 3 cut(s) 157, 182, 385
MboII GAAGA 7 cut(s) 37, 192, 271, 445, 455, 461, 464
MhlI GDGCHC 1 cut(s) 556
MluCI AATT 1 cut(s) 520
MmeI TCCRAC 1 cut(s) 530
Mph1103I ATGCAT 1 cut(s) 229
MseI TTAA 2 cut(s) 32, 284
MspCI CTTAAG 1 cut(s) 31
Mva1269I GAATGC 2 cut(s) 229, 540
MvnI CGCG 3 cut(s) 69, 79, 269
MwoI GCNNNNNNNGC 3 cut(s) 16, 135, 560
NcoI CCATGG 1 cut(s) 316
NdeII GATC 3 cut(s) 157, 182, 385
NlaIII CATG 5 cut(s) 97, 197, 320, 349, 369
NlaIV GGNNCC 2 cut(s) 9, 322
NruI TCGCGA 1 cut(s) 69
NsiI ATGCAT 1 cut(s) 229
NspI RCATGY 2 cut(s) 97, 369
PagI TCATGA 1 cut(s) 193
PciI ACATGT 2 cut(s) 93, 365
PctI GAATGC 2 cut(s) 229, 540
PkrI GCNGC 3 cut(s) 121, 140, 325
PscI ACATGT 2 cut(s) 93, 365
Psp124BI GAGCTC 1 cut(s) 556
PspN4I GGNNCC 2 cut(s) 9, 322
RruI TCGCGA 1 cut(s) 69
SacI GAGCTC 1 cut(s) 556
SaqAI TTAA 2 cut(s) 32, 284
SatI GCNGC 3 cut(s) 120, 139, 324
Sau3AI GATC 3 cut(s) 157, 182, 385
SduI GDGCHC 1 cut(s) 556
SetI ASST 5 cut(s) 28, 298, 420, 518, 556
SfaNI GCATC 1 cut(s) 508
SmlI CTYRAG 1 cut(s) 31
SmoI CTYRAG 1 cut(s) 31
Sse9I AATT 1 cut(s) 520
SsiI CCGC 3 cut(s) 77, 139, 324
SspMI CTAG 1 cut(s) 525
SstI GAGCTC 1 cut(s) 556
StyI CCWWGG 2 cut(s) 316, 405
TaqI TCGA 2 cut(s) 21, 61
TasI AATT 1 cut(s) 520
TauI GCSGC 2 cut(s) 141, 326
Tru1I TTAA 2 cut(s) 32, 284
Tru9I TTAA 2 cut(s) 32, 284
TseI GCWGC 1 cut(s) 119
Vha464I CTTAAG 1 cut(s) 31
XceI RCATGY 2 cut(s) 97, 369
XspI CTAG 1 cut(s) 525
Zsp2I ATGCAT 1 cut(s) 229
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.