Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp07

Orthogroup ID

OG0002320

Physical Location & Seq

Genomic Coordinates Forward (+)

14560935 .. 14562638

Gene Structure 1704 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.7G123100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 621 bp

ATGGACACAACAATGCTGGTACCTCCATGGCTGGAGCAATTGCTAAGCACCTCATTCTTCTCAGTCTGCCGTACTCATGGAGACGCAGCCAGAAGTGAGTGCAACATGTTCTGCTTAGATTGCAGTGGTGATGCTTTTTGCTTCTATTGCCGTTCCTCTAGACACAAAGATCACCAAGTCATTCAGATAAGGAGATCTTCATACCATGATGTGGTGAGAGTTTCAGAGGTACAGAAGGTATTGGATATAAGTGGAGTTCAAACATATGTTATAAACAGTGCCAGAGTTATGTTTCTGAATGAGAGGCCTCAGCCTAAGGCTGGGAACAAAGGGGTTCCTCACATTTGTGAAATCTGTGGCAGAAGCCTCTTGGACACATTTCGTTTCTGCTCACTGGGCTGTAAGCTTGTAGGGATAAAGAGAAATGGGGATGCAAACTTTACCTTGGAGGCAAAGAATGAGGAGGGAAATGGGAGAAGAGAAGGAAGAGGGGCAATGAGAGAGGAAGAAGAGTTGCGTGAAGGCTCACAACAAGACATATACCCGCCCACGCCGCCTCCACCTCCTTCCACAACAAGAAGAAGAAAAGGCATTCCACATAGGGCACCCTTTGGGTCCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PLATZ

Protein Analysis

207

Amino Acids

23.22

Weight (kDa)

8.72

Isoelectric Point (pI)

63.8

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0002320)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G27930 AT2G27930 AT2G27930 AT2G27930 AT2G27930 AT2G27930
fragaria_vesca	FvH4_3g30410 FvH4_3g30410 FvH4_6g17200 FvH4_6g17200
malus_domestica	MD03G1129200.v1.1 MD11G1151300.v1.1 MD12G1103000.v1.1 MD14G1097400.v1.1
prunus_persica	Prupe.6G114500_v2.0.a1 Prupe.6G114500_v2.0.a1 Prupe.7G123100_v2.0.a1
pyrus_communis	pycom11g12330 pycom12g10120 pycom14g09510
rosa_chinensis	RchiOBHm_Chr3g0471281 RchiOBHm_Chr5g0056371
rosa_laevigata	RLG00000024191
rosa_multiflora	Rmu_co8075908.1_g000001 Rmu_sc0000317.1_g000021 Rmu_sc0009082.1_g000006
rosa_roxburghii	Rroxscaffold_1G00023940 Rroxscaffold_6G00410110
rosa_rugosa	Rorug03G0116700 Rorug03G0116800 Rorug05G0299200 Rorug05G0299200
rosa_samantha	Rh3AG166100 Rh3BG191500 Rh3CG181800 Rh3DG184100 Rh5AG370000 Rh5BG381000 Rh5CG404300 Rh5DG394300
rosa_wichuraiana	Rw3G015640 Rw5G034650

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	272
Acc65I	GGTACC	1 cut(s)	19
AccB1I	GGYRCC	2 cut(s)	19, 604
AccB7I	CCANNNNNTGG	1 cut(s)	211
AciI	CCGC	2 cut(s)	545, 554
AfaI	GTAC	3 cut(s)	21, 73, 231
AfiI	CCNNNNNNNGG	2 cut(s)	211, 320
AflIII	ACRYGT	1 cut(s)	105
AgsI	TTSAA	1 cut(s)	260
AleI	CACNNNNGTG	1 cut(s)	345
AluBI	AGCT	1 cut(s)	406
AluI	AGCT	1 cut(s)	406
Alw26I	GTCTC	1 cut(s)	75
AoxI	GGCC	1 cut(s)	305
ApeKI	GCWGC	1 cut(s)	86
Asp718I	GGTACC	1 cut(s)	19
AspS9I	GGNCC	1 cut(s)	615
AsuHPI	GGTGA	3 cut(s)	140, 164, 226
AvaII	GGWCC	1 cut(s)	615
AxyI	CCTNAGG	1 cut(s)	315
BaeGI	GKGCMC	1 cut(s)	607
BanI	GGYRCC	2 cut(s)	19, 604
BbvCI	CCTCAGC	1 cut(s)	309
BbvI	GCAGC	1 cut(s)	98
BceAI	ACGGC	2 cut(s)	54, 135
BcoDI	GTCTC	1 cut(s)	75
BfaI	CTAG	1 cut(s)	159
BglII	AGATCT	1 cut(s)	194
BisI	GCNGC	2 cut(s)	87, 554
BlpI	GCTNAGC	1 cut(s)	44
BlsI	GCNGC	2 cut(s)	88, 555
Bme18I	GGWCC	1 cut(s)	615
BmgT120I	GGNCC	1 cut(s)	615
BmiI	GGNNCC	4 cut(s)	21, 336, 606, 616
BmrI	ACTGGG	1 cut(s)	404
BmsI	GCATC	2 cut(s)	121, 421
BmuI	ACTGGG	1 cut(s)	404
BpmI	CTGGAG	1 cut(s)	53
Bpu10I	CCTNAGC	1 cut(s)	309
Bpu1102I	GCTNAGC	1 cut(s)	44
BsaJI	CCNNGG	2 cut(s)	26, 444
BsaXI	ACNNNNNCTCC	2 cut(s)	541, 571
Bsc4I	CCNNNNNNNGG	2 cut(s)	211, 320
Bse1I	ACTGG	1 cut(s)	399
Bse21I	CCTNAGG	1 cut(s)	315
Bse3DI	GCAATG	1 cut(s)	501
BseDI	CCNNGG	2 cut(s)	26, 444
BseGI	GGATG	1 cut(s)	436
BseLI	CCNNNNNNNGG	2 cut(s)	211, 320
BseMI	GCAATG	1 cut(s)	501
BseMII	CTCAG	2 cut(s)	75, 323
BseNI	ACTGG	1 cut(s)	399
BseRI	GAGGAG	1 cut(s)	476
BseSI	GKGCMC	1 cut(s)	607
BseXI	GCAGC	1 cut(s)	98
BseYI	CCCAGC	1 cut(s)	320
BshFI	GGCC	1 cut(s)	307
BshNI	GGYRCC	2 cut(s)	19, 604
BslI	CCNNNNNNNGG	2 cut(s)	211, 320
BsmAI	GTCTC	1 cut(s)	75
BsmBI	CGTCTC	1 cut(s)	75
BsmI	GAATGC	1 cut(s)	591
BsnI	GGCC	1 cut(s)	307
Bsp1286I	GDGCHC	1 cut(s)	607
Bsp143I	GATC	2 cut(s)	169, 194
Bsp1720I	GCTNAGC	1 cut(s)	44
Bsp19I	CCATGG	1 cut(s)	26
BspACI	CCGC	2 cut(s)	545, 554
BspANI	GGCC	1 cut(s)	307
BspCNI	CTCAG	2 cut(s)	74, 322
BspLI	GGNNCC	4 cut(s)	21, 336, 606, 616
BspT107I	GGYRCC	2 cut(s)	19, 604
BsrDI	GCAATG	1 cut(s)	501
BsrI	ACTGG	1 cut(s)	399
BssECI	CCNNGG	2 cut(s)	26, 444
BssMI	GATC	2 cut(s)	169, 194
BssT1I	CCWWGG	2 cut(s)	26, 444
Bst4CI	ACNGT	1 cut(s)	278
Bst6I	CTCTTC	3 cut(s)	472, 481, 504
BstDEI	CTNAG	5 cut(s)	44, 61, 115, 309, 315
BstDSI	CCRYGG	1 cut(s)	26
BstF5I	GGATG	1 cut(s)	436
BstKTI	GATC	2 cut(s)	172, 197
BstMAI	GTCTC	1 cut(s)	75
BstMBI	GATC	2 cut(s)	169, 194
BstMWI	GCNNNNNNNGC	4 cut(s)	120, 147, 396, 553
BstNSI	RCATGY	1 cut(s)	109
BstSLI	GKGCMC	1 cut(s)	607
BstV1I	GCAGC	1 cut(s)	98
BstX2I	RGATCY	1 cut(s)	194
BstYI	RGATCY	1 cut(s)	194
Bsu36I	CCTNAGG	1 cut(s)	315
BsuRI	GGCC	1 cut(s)	307
BtgI	CCRYGG	1 cut(s)	26
BtsCI	GGATG	1 cut(s)	436
BtsI	GCAGTG	1 cut(s)	130
BtsIMutI	CAGTG	3 cut(s)	130, 283, 392
Cfr13I	GGNCC	1 cut(s)	615
CseI	GACGC	1 cut(s)	92
Csp6I	GTAC	3 cut(s)	20, 72, 230
CviAII	CATG	4 cut(s)	27, 77, 106, 206
CviJI	RGCY	9 cut(s)	31, 89, 307, 313, 320, 366, 399, 406, 525
CviKI_1	RGCY	9 cut(s)	31, 89, 307, 313, 320, 366, 399, 406, 525
CviQI	GTAC	3 cut(s)	20, 72, 230
DdeI	CTNAG	5 cut(s)	44, 61, 115, 309, 315
DpnI	GATC	2 cut(s)	171, 196
DpnII	GATC	2 cut(s)	169, 194
Eam1104I	CTCTTC	3 cut(s)	472, 481, 504
EarI	CTCTTC	3 cut(s)	472, 481, 504
Eco130I	CCWWGG	2 cut(s)	26, 444
Eco147I	AGGCCT	1 cut(s)	307
Eco47I	GGWCC	1 cut(s)	615
Eco81I	CCTNAGG	1 cut(s)	315
EcoO109I	RGGNCCY	1 cut(s)	615
EcoT14I	CCWWGG	2 cut(s)	26, 444
ErhI	CCWWGG	2 cut(s)	26, 444
Esp3I	CGTCTC	1 cut(s)	75
FaeI	CATG	4 cut(s)	30, 80, 109, 209
FalI	AAGNNNNNCTT	2 cut(s)	181, 213
FatI	CATG	4 cut(s)	26, 76, 105, 205
FauI	CCCGC	1 cut(s)	552
FauNDI	CATATG	1 cut(s)	265
Fnu4HI	GCNGC	2 cut(s)	87, 554
FokI	GGATG	1 cut(s)	443
Fsp4HI	GCNGC	2 cut(s)	87, 554
FspBI	CTAG	1 cut(s)	159
GluI	GCNGC	2 cut(s)	87, 554
GsaI	CCCAGC	1 cut(s)	324
GsuI	CTGGAG	1 cut(s)	53
HaeIII	GGCC	1 cut(s)	307
HgaI	GACGC	1 cut(s)	92
Hin1II	CATG	4 cut(s)	30, 80, 109, 209
HindIII	AAGCTT	1 cut(s)	404
HphI	GGTGA	3 cut(s)	140, 164, 226
Hpy188I	TCNGA	3 cut(s)	186, 226, 297
Hpy188III	TCNNGA	1 cut(s)	159
HpyAV	CCTTC	4 cut(s)	229, 476, 515, 576
HpyCH4III	ACNGT	1 cut(s)	278
HpyCH4V	TGCA	3 cut(s)	102, 123, 434
HpyF10VI	GCNNNNNNNGC	4 cut(s)	120, 147, 396, 553
HpyF3I	CTNAG	5 cut(s)	44, 61, 115, 309, 315
Hsp92II	CATG	4 cut(s)	30, 80, 109, 209
KpnI	GGTACC	1 cut(s)	23
Kzo9I	GATC	2 cut(s)	169, 194
LmnI	GCTCC	1 cut(s)	34
LpnPI	CCDG	6 cut(s)	2, 17, 103, 295, 306, 380
Lsp1109I	GCAGC	1 cut(s)	98
LweI	GCATC	2 cut(s)	121, 421
MaeI	CTAG	1 cut(s)	159
MalI	GATC	2 cut(s)	171, 196
MboI	GATC	2 cut(s)	169, 194
MboII	GAAGA	8 cut(s)	49, 189, 489, 498, 518, 521, 591, 594
MfeI	CAATTG	1 cut(s)	38
MflI	RGATCY	1 cut(s)	194
MhlI	GDGCHC	1 cut(s)	607
MluCI	AATT	1 cut(s)	38
MslI	CAYNNNNRTG	2 cut(s)	11, 345
MunI	CAATTG	1 cut(s)	38
Mva1269I	GAATGC	1 cut(s)	591
MwoI	GCNNNNNNNGC	4 cut(s)	120, 147, 396, 553
NcoI	CCATGG	1 cut(s)	26
NdeI	CATATG	1 cut(s)	265
NdeII	GATC	2 cut(s)	169, 194
NlaIII	CATG	4 cut(s)	30, 80, 109, 209
NlaIV	GGNNCC	4 cut(s)	21, 336, 606, 616
NspI	RCATGY	1 cut(s)	109
OliI	CACNNNNGTG	1 cut(s)	345
PceI	AGGCCT	1 cut(s)	307
PciI	ACATGT	1 cut(s)	105
PctI	GAATGC	1 cut(s)	591
PflMI	CCANNNNNTGG	1 cut(s)	211
PkrI	GCNGC	2 cut(s)	88, 555
PpuMI	RGGWCCY	1 cut(s)	615
PscI	ACATGT	1 cut(s)	105
PsiI	TTATAA	1 cut(s)	272
Psp5II	RGGWCCY	1 cut(s)	615
PspFI	CCCAGC	1 cut(s)	320
PspN4I	GGNNCC	4 cut(s)	21, 336, 606, 616
PspPI	GGNCC	1 cut(s)	615
PspPPI	RGGWCCY	1 cut(s)	615
PsuI	RGATCY	1 cut(s)	194
RsaI	GTAC	3 cut(s)	21, 73, 231
RsaNI	GTAC	3 cut(s)	20, 72, 230
RseI	CAYNNNNRTG	2 cut(s)	11, 345
SatI	GCNGC	2 cut(s)	87, 554
Sau3AI	GATC	2 cut(s)	169, 194
Sau96I	GGNCC	1 cut(s)	615
SduI	GDGCHC	1 cut(s)	607
SetI	ASST	7 cut(s)	25, 53, 231, 240, 408, 446, 565
SfaNI	GCATC	2 cut(s)	121, 421
SinI	GGWCC	1 cut(s)	615
SmiMI	CAYNNNNRTG	2 cut(s)	11, 345
Sse9I	AATT	1 cut(s)	38
SseBI	AGGCCT	1 cut(s)	307
SsiI	CCGC	2 cut(s)	545, 554
SspMI	CTAG	1 cut(s)	159
StuI	AGGCCT	1 cut(s)	307
StyI	CCWWGG	2 cut(s)	26, 444
TaaI	ACNGT	1 cut(s)	278
TasI	AATT	1 cut(s)	38
TauI	GCSGC	1 cut(s)	556
TscAI	CASTG	3 cut(s)	130, 283, 399
TseI	GCWGC	1 cut(s)	86
TspDTI	ATGAA	1 cut(s)	189
TspRI	CASTG	3 cut(s)	130, 283, 399
Van91I	CCANNNNNTGG	1 cut(s)	211
VpaK11BI	GGWCC	1 cut(s)	615
XbaI	TCTAGA	1 cut(s)	158
XceI	RCATGY	1 cut(s)	109
XspI	CTAG	1 cut(s)	159

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.