Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr14

Orthogroup ID

OG0002320

Physical Location & Seq

Genomic Coordinates Reverse (-)

11458389 .. 11459765

Gene Structure 1377 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom14g09510.3

Sequence Viewer

CDS Protein Promoter (2k)

Length: 594 bp

ATGGACAGGACAATGCTGGTGCCGCCATGGCTGGAGCAGTTGCTCAACACATCATTCTTCAGAGTCTGCCGTACACATGGAGACGCCGCCAGAAGTGAGTGCAACATGTTCTGCTTAGATTGCAGTGGAGACGCTTTCTGCTTTTATTGCAGGTCCTCCGGACACAAAGATCACCAAGTCATTCAGATAAGGAGATCTTCATACCATGATGTGGTGAGGGTTTCAGAGGTGCAGAAGGCATTAGACATAAACGGAGTTCAGACATACGTGATAAACAGCGCCAGAGTTATGTTTCTGAATGAGAGGCCTCAGCCGAAGGCTGGCAGTAAGGGATCTCCCCATATTTGTGAACTCTGTGGCAGAAGCCTCTTGGATCCTGTTCGTTTCTGCTCACTCGGCTGTAAGCTTGCGGGAATAAATAGAAATGGGGATGCAAACTTTACCTTAGAGGCGAAGGATGAGGAGGCAATGGGGAGGAGAGAAGAGTTGCGTGAAGGCTCACAACAAGACATATGCCCGCCCACGCCGCCTCCACCTCCTTCCACAGCAAGAAGAAGAAAAGGCATTCCTCATAGGGCACCCTTTGGCTCCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PLATZ

Protein Analysis

198

Amino Acids

22.07

Weight (kDa)

8.68

Isoelectric Point (pI)

63.22

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002320)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G27930 AT2G27930 AT2G27930 AT2G27930 AT2G27930 AT2G27930
fragaria_vesca	FvH4_3g30410 FvH4_3g30410 FvH4_6g17200 FvH4_6g17200
malus_domestica	MD03G1129200.v1.1 MD11G1151300.v1.1 MD12G1103000.v1.1 MD14G1097400.v1.1
prunus_persica	Prupe.6G114500_v2.0.a1 Prupe.6G114500_v2.0.a1 Prupe.7G123100_v2.0.a1
pyrus_communis	pycom11g12330 pycom12g10120 pycom14g09510
rosa_chinensis	RchiOBHm_Chr3g0471281 RchiOBHm_Chr5g0056371
rosa_laevigata	RLG00000024191
rosa_multiflora	Rmu_co8075908.1_g000001 Rmu_sc0000317.1_g000021 Rmu_sc0009082.1_g000006
rosa_roxburghii	Rroxscaffold_1G00023940 Rroxscaffold_6G00410110
rosa_rugosa	Rorug03G0116700 Rorug03G0116800 Rorug05G0299200 Rorug05G0299200
rosa_samantha	Rh3AG166100 Rh3BG191500 Rh3CG181800 Rh3DG184100 Rh5AG370000 Rh5BG381000 Rh5CG404300 Rh5DG394300
rosa_wichuraiana	Rw3G015640 Rw5G034650

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	141
AccB1I	GGYRCC	2 cut(s)	19, 577
AccB7I	CCANNNNNTGG	1 cut(s)	211
AccIII	TCCGGA	1 cut(s)	158
AciI	CCGC	5 cut(s)	23, 87, 410, 518, 527
AclWI	GGATC	3 cut(s)	340, 368, 381
AcuI	CTGAAG	1 cut(s)	43
AcyI	GRCGYC	1 cut(s)	84
AfaI	GTAC	1 cut(s)	73
AfiI	CCNNNNNNNGG	2 cut(s)	211, 320
AflIII	ACRYGT	1 cut(s)	105
AluBI	AGCT	1 cut(s)	406
AluI	AGCT	1 cut(s)	406
Alw26I	GTCTC	2 cut(s)	75, 123
AlwI	GGATC	3 cut(s)	340, 368, 381
AlwNI	CAGNNNCTG	1 cut(s)	66
Aor13HI	TCCGGA	1 cut(s)	158
AoxI	GGCC	1 cut(s)	305
AspLEI	GCGC	1 cut(s)	281
AspS9I	GGNCC	1 cut(s)	153
AsuHPI	GGTGA	2 cut(s)	164, 226
AvaII	GGWCC	1 cut(s)	153
BaeGI	GKGCMC	1 cut(s)	580
BamHI	GGATCC	1 cut(s)	373
BanI	GGYRCC	2 cut(s)	19, 577
BbvCI	CCTCAGC	1 cut(s)	309
BceAI	ACGGC	1 cut(s)	54
BcoDI	GTCTC	2 cut(s)	75, 123
BfoI	RGCGCY	1 cut(s)	282
BfuAI	ACCTGC	1 cut(s)	141
BglI	GCCNNNNNGGC	1 cut(s)	28
BglII	AGATCT	1 cut(s)	194
BisI	GCNGC	3 cut(s)	23, 87, 527
BlsI	GCNGC	3 cut(s)	24, 88, 528
Bme18I	GGWCC	1 cut(s)	153
BmgT120I	GGNCC	1 cut(s)	153
BmiI	GGNNCC	4 cut(s)	21, 375, 579, 589
BmsI	GCATC	1 cut(s)	421
BpmI	CTGGAG	1 cut(s)	53
Bpu10I	CCTNAGC	1 cut(s)	309
BsaAI	YACGTR	1 cut(s)	268
BsaHI	GRCGYC	1 cut(s)	84
BsaJI	CCNNGG	1 cut(s)	26
BsaWI	WCCGGW	1 cut(s)	158
BsaXI	ACNNNNNCTCC	2 cut(s)	514, 544
Bsc4I	CCNNNNNNNGG	2 cut(s)	211, 320
Bse3DI	GCAATG	1 cut(s)	474
BseAI	TCCGGA	1 cut(s)	158
BseDI	CCNNGG	1 cut(s)	26
BseGI	GGATG	2 cut(s)	436, 463
BseLI	CCNNNNNNNGG	2 cut(s)	211, 320
BseMI	GCAATG	1 cut(s)	474
BseMII	CTCAG	1 cut(s)	323
BseRI	GAGGAG	2 cut(s)	476, 490
BseSI	GKGCMC	1 cut(s)	580
BsgI	GTGCAG	1 cut(s)	251
BshFI	GGCC	1 cut(s)	307
BshNI	GGYRCC	2 cut(s)	19, 577
BsiSI	CCGG	1 cut(s)	159
BslI	CCNNNNNNNGG	2 cut(s)	211, 320
BsmAI	GTCTC	2 cut(s)	75, 123
BsmBI	CGTCTC	2 cut(s)	75, 123
BsmI	GAATGC	1 cut(s)	564
BsnI	GGCC	1 cut(s)	307
Bsp1286I	GDGCHC	1 cut(s)	580
Bsp13I	TCCGGA	1 cut(s)	158
Bsp143I	GATC	4 cut(s)	169, 194, 332, 373
Bsp19I	CCATGG	1 cut(s)	26
BspACI	CCGC	5 cut(s)	23, 87, 410, 518, 527
BspANI	GGCC	1 cut(s)	307
BspCNI	CTCAG	1 cut(s)	322
BspEI	TCCGGA	1 cut(s)	158
BspLI	GGNNCC	4 cut(s)	21, 375, 579, 589
BspMI	ACCTGC	1 cut(s)	141
BspPI	GGATC	3 cut(s)	340, 368, 381
BspT107I	GGYRCC	2 cut(s)	19, 577
BsrDI	GCAATG	1 cut(s)	474
BssECI	CCNNGG	1 cut(s)	26
BssMI	GATC	4 cut(s)	169, 194, 332, 373
BssNI	GRCGYC	1 cut(s)	84
BssT1I	CCWWGG	1 cut(s)	26
Bst6I	CTCTTC	1 cut(s)	477
BstACI	GRCGYC	1 cut(s)	84
BstBAI	YACGTR	1 cut(s)	268
BstC8I	GCNNGC	3 cut(s)	322, 408, 518
BstDEI	CTNAG	3 cut(s)	115, 309, 445
BstDSI	CCRYGG	1 cut(s)	26
BstF5I	GGATG	2 cut(s)	436, 463
BstH2I	RGCGCY	1 cut(s)	282
BstHHI	GCGC	1 cut(s)	281
BstKTI	GATC	4 cut(s)	172, 197, 335, 376
BstMAI	GTCTC	2 cut(s)	75, 123
BstMBI	GATC	4 cut(s)	169, 194, 332, 373
BstMWI	GCNNNNNNNGC	6 cut(s)	22, 28, 120, 147, 396, 526
BstNSI	RCATGY	1 cut(s)	109
BstSLI	GKGCMC	1 cut(s)	580
BstX2I	RGATCY	3 cut(s)	194, 332, 373
BstYI	RGATCY	3 cut(s)	194, 332, 373
BsuRI	GGCC	1 cut(s)	307
BtgI	CCRYGG	1 cut(s)	26
BtsCI	GGATG	2 cut(s)	436, 463
BtsI	GCAGTG	1 cut(s)	130
BtsIMutI	CAGTG	1 cut(s)	130
BveI	ACCTGC	1 cut(s)	141
Cac8I	GCNNGC	3 cut(s)	322, 408, 518
CaiI	CAGNNNCTG	1 cut(s)	66
CfoI	GCGC	1 cut(s)	281
Cfr13I	GGNCC	1 cut(s)	153
CseI	GACGC	2 cut(s)	92, 140
Csp6I	GTAC	1 cut(s)	72
CviAII	CATG	4 cut(s)	27, 77, 106, 206
CviJI	RGCY	9 cut(s)	31, 307, 313, 320, 366, 399, 406, 498, 588
CviKI_1	RGCY	9 cut(s)	31, 307, 313, 320, 366, 399, 406, 498, 588
CviQI	GTAC	1 cut(s)	72
DdeI	CTNAG	3 cut(s)	115, 309, 445
DpnI	GATC	4 cut(s)	171, 196, 334, 375
DpnII	GATC	4 cut(s)	169, 194, 332, 373
Eam1104I	CTCTTC	1 cut(s)	477
EarI	CTCTTC	1 cut(s)	477
Eco130I	CCWWGG	1 cut(s)	26
Eco147I	AGGCCT	1 cut(s)	307
Eco47I	GGWCC	1 cut(s)	153
Eco57I	CTGAAG	1 cut(s)	43
EcoO109I	RGGNCCY	1 cut(s)	153
EcoT14I	CCWWGG	1 cut(s)	26
ErhI	CCWWGG	1 cut(s)	26
Esp3I	CGTCTC	2 cut(s)	75, 123
FaeI	CATG	4 cut(s)	30, 80, 109, 209
FalI	AAGNNNNNCTT	2 cut(s)	181, 213
FatI	CATG	4 cut(s)	26, 76, 105, 205
FauI	CCCGC	2 cut(s)	403, 525
FauNDI	CATATG	1 cut(s)	512
Fnu4HI	GCNGC	3 cut(s)	23, 87, 527
FokI	GGATG	2 cut(s)	443, 470
Fsp4HI	GCNGC	3 cut(s)	23, 87, 527
GlaI	GCGC	1 cut(s)	280
GluI	GCNGC	3 cut(s)	23, 87, 527
GsuI	CTGGAG	1 cut(s)	53
HaeII	RGCGCY	1 cut(s)	282
HaeIII	GGCC	1 cut(s)	307
HapII	CCGG	1 cut(s)	159
HgaI	GACGC	2 cut(s)	92, 140
HhaI	GCGC	1 cut(s)	281
Hin1I	GRCGYC	1 cut(s)	84
Hin1II	CATG	4 cut(s)	30, 80, 109, 209
Hin6I	GCGC	1 cut(s)	279
HinP1I	GCGC	1 cut(s)	279
HindIII	AAGCTT	1 cut(s)	404
HinfI	GANTC	1 cut(s)	63
HpaII	CCGG	1 cut(s)	159
HphI	GGTGA	2 cut(s)	164, 226
Hpy166II	GTNNAC	2 cut(s)	74, 350
Hpy188I	TCNGA	5 cut(s)	62, 186, 226, 261, 297
Hpy188III	TCNNGA	1 cut(s)	159
Hpy8I	GTNNAC	2 cut(s)	74, 350
HpyAV	CCTTC	5 cut(s)	229, 310, 448, 488, 549
HpyCH4IV	ACGT	1 cut(s)	267
HpyCH4V	TGCA	5 cut(s)	102, 123, 150, 232, 434
HpyF10VI	GCNNNNNNNGC	6 cut(s)	22, 28, 120, 147, 396, 526
HpyF3I	CTNAG	3 cut(s)	115, 309, 445
HpySE526I	ACGT	1 cut(s)	267
Hsp92I	GRCGYC	1 cut(s)	84
Hsp92II	CATG	4 cut(s)	30, 80, 109, 209
HspAI	GCGC	1 cut(s)	279
Kpn2I	TCCGGA	1 cut(s)	158
Kzo9I	GATC	4 cut(s)	169, 194, 332, 373
LmnI	GCTCC	2 cut(s)	34, 593
LpnPI	CCDG	8 cut(s)	2, 17, 103, 136, 172, 295, 306, 390
LweI	GCATC	1 cut(s)	421
MaeII	ACGT	1 cut(s)	267
MalI	GATC	4 cut(s)	171, 196, 334, 375
MboI	GATC	4 cut(s)	169, 194, 332, 373
MboII	GAAGA	5 cut(s)	49, 189, 494, 564, 567
MflI	RGATCY	3 cut(s)	194, 332, 373
MhlI	GDGCHC	1 cut(s)	580
MlyI	GAGTC	1 cut(s)	72
MroI	TCCGGA	1 cut(s)	158
MslI	CAYNNNNRTG	1 cut(s)	345
MspI	CCGG	1 cut(s)	159
Mva1269I	GAATGC	1 cut(s)	564
MwoI	GCNNNNNNNGC	6 cut(s)	22, 28, 120, 147, 396, 526
NcoI	CCATGG	1 cut(s)	26
NdeI	CATATG	1 cut(s)	512
NdeII	GATC	4 cut(s)	169, 194, 332, 373
NlaIII	CATG	4 cut(s)	30, 80, 109, 209
NlaIV	GGNNCC	4 cut(s)	21, 375, 579, 589
NmeAIII	GCCGAG	1 cut(s)	375
NspI	RCATGY	1 cut(s)	109
PceI	AGGCCT	1 cut(s)	307
PciI	ACATGT	1 cut(s)	105
PctI	GAATGC	1 cut(s)	564
PflMI	CCANNNNNTGG	1 cut(s)	211
PkrI	GCNGC	3 cut(s)	24, 88, 528
PleI	GAGTC	1 cut(s)	71
PpsI	GAGTC	1 cut(s)	71
Ppu21I	YACGTR	1 cut(s)	268
PpuMI	RGGWCCY	1 cut(s)	153
PscI	ACATGT	1 cut(s)	105
Psp5II	RGGWCCY	1 cut(s)	153
PspN4I	GGNNCC	4 cut(s)	21, 375, 579, 589
PspPI	GGNCC	1 cut(s)	153
PspPPI	RGGWCCY	1 cut(s)	153
PstNI	CAGNNNCTG	1 cut(s)	66
PsuI	RGATCY	3 cut(s)	194, 332, 373
RsaI	GTAC	1 cut(s)	73
RsaNI	GTAC	1 cut(s)	72
RseI	CAYNNNNRTG	1 cut(s)	345
SatI	GCNGC	3 cut(s)	23, 87, 527
Sau3AI	GATC	4 cut(s)	169, 194, 332, 373
Sau96I	GGNCC	1 cut(s)	153
SchI	GAGTC	1 cut(s)	72
SduI	GDGCHC	1 cut(s)	580
SetI	ASST	6 cut(s)	155, 231, 270, 408, 446, 538
SfaNI	GCATC	1 cut(s)	421
SinI	GGWCC	1 cut(s)	153
SmiMI	CAYNNNNRTG	1 cut(s)	345
SseBI	AGGCCT	1 cut(s)	307
SsiI	CCGC	5 cut(s)	23, 87, 410, 518, 527
StuI	AGGCCT	1 cut(s)	307
StyI	CCWWGG	1 cut(s)	26
TaiI	ACGT	1 cut(s)	270
TauI	GCSGC	3 cut(s)	25, 89, 529
TscAI	CASTG	1 cut(s)	130
TspDTI	ATGAA	1 cut(s)	189
TspGWI	ACGGA	1 cut(s)	267
TspRI	CASTG	1 cut(s)	130
Van91I	CCANNNNNTGG	1 cut(s)	211
VpaK11BI	GGWCC	1 cut(s)	153
XceI	RCATGY	1 cut(s)	109

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.