Rorug03G0116800

Vacuolar protein-sorting-associated protein 37 homolog

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000003
Physical Location & Seq
Reverse (-)
9494055 .. 9503462
9408 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug03G0116800.1

Sequence Viewer

Length: 4002 bp
ATGGTGGGCATGATGATGATGACCACCGCCAATTCCAACGAACGCATCGCTCGCCTCTTGGACTCCGCCGTCGTCGCCGCCGACATACCGTCCAAGCTCGACCGGCTAACCCAATTGAAGCGAGATTTACTCCGGCGAGACCCTGCTTTCATCTCCGAGCTCCTTCCTCGCCTCTTCGAGCTTCAGTCCGACCGGTTCAGTCCCGTTCGGAAATTTGCCACCGTAATGCTCGGCGAAATTGGATTGATGCACGTAGATTTCGTGCCTGAGATTGTGCCGTCGTTGATTAATGTGTTAAGCGATGATACACCGGCTGTGGCCCGCCAAGCCATTACTAGTGGGAGTGAGTTGTTTCGCTGCGTTCTAGAGAAGGTTGCACTTCAGGGTCTACACTCTAGTGAGTTGGACAGTTTGCTTGAGTCATCGTGGTCATGGATGTTGAAGTTGAAGGAGGAGATATTCTCGATAGCTTTTCAGCCAGGAAGCGGTGGAGTGAGGTTGCTGGCATTGAAATTTGTCCAGGAAGTTATTCTTCTTTATACTCCTGATCCTAATGGCTCCCAAGAGCCCCCAGCTCATGAAGGACAATTGGTGGAATTTAATATATCTTGGCTTCGTGGCGGTCATCCCCTACTCAATGTTGGAAATTTGTCAATTGAGGCTAGTCAAAGTATGGGCTCATTGCTTGATCAACTAAGGCTCCCAACTGTTAAGTCTCTTGGCAACTTAGTCATCGTTGTGCTTATTAATAGTCTTTCAGCAATTGCGAAGAATAGACCTGCCTTCTATGGTCGCATTTTGCCTGTATTACTTGGGTTTGATCCCTCAACTGCTGTCATTAATGGGATACGTGTCTCAGGAGCACACTATGCCTTAAAAAATGCCTTCATCTCCTGCTTAAAATGTACTCACCAGGGTGCTGCACCGTGGCGAGATCGTTTAGTTGGGGCGTTGACCAAGATGAAAGATGGAGGGTTGGTAGAGCATGCCATTTATCCAGTTGGCAATATTAATGGAAATGTGGAGGGTCAAAACAATTCTCCAGTTATTAAGGAAGAGGAGCCCACAGTTAGAACATCTACTGCTGTGCAAAGTAATTTTGGGAGGAAACGATTGGGAGCACCGGATAGTAGTGAACTTGCTGAGGATGAAGACGCCTCTGGAAAGCGTATCAAATCAACACCTAGTGTCTCAGAAGAATCGACCAAAGATGTAGATAGGAATATTTCTGTGTCTCAAGATGACATTTCTTCAAGTGGGACAGCCACTTCCAGAGGAAGTGGTGATAGTGGACCTGTGCAGCAACTTCTTGATATGTTTGGCGCATTGGTTGCTCAGGGTGAAAAAGCGGTTGGTTCTTTAGAGGTTCTTATCTCAAGTTTCTCTGCTGACATGCTAGCTGAGGTAGTGATGGCTAACATGTGCAACCTTCCTCCCAATCTTCCTGGAGCTGAAGGAGATGATGTATCTTTGATAAACATGGGTATAGTTGGCGGCGATTCTCGAGTCAAATATCCCCAATCATTTATTGCCGATGTACTCTCTCTTACAAGTACTTTCCCTCCAATAGCTGCACTTCTGGATGCTCATCAGTCGGCGTCTTATAATATAGTGAAATCTGAGCCGAAGGAAGAGCAGGTAACAGTTGTAGGTGATAGTGCTGTTGCTTGTACTGATATGGATTATGAAGCTGAAACTGCTATGCTGCCTACTGGTTTACCAGCTTCACCTAATGTGTTTTCACCTGAGACAGAGAATGGTTGTCCGTCTCTTCCGTCTGATGTTGATGACATAGACGGTCTTGAGAATGAAATACCTGGGCTCGATTCTTCTGCTTGTAATAGTGGATTATCAGAACCTGTTGTTGCATCCTCTTCGACCTTCATGGATGTCGAAGATGCCAGTCTAGAGCAAGTTAGCAGTTTGAGTCAGCAGCCACTGCTTAATATACTTCCATCATTGTCGGCCGATAGGTCTGAGGAGCTTAGCCTTGGAGCAGCTGTTGCAGATGTCAACAGTCTGATATCTTCAACAGCAACATCAGTTGGGTTGACCCATCATCTTGTCCTGCCTAAGATGTCAGCGCCGGTTGTCATCCTTTCTGATGAAGAGAACGATCGTTTACAGAAGTTGGCTTTTACCCGCATAATCGAGGCATATAAGCAGATTGATGTTTCTGGCGGTTCCCAAGTTCGAATCTCTCTCCTTATACATTTAGGAGTCGAGTTCCCCTTGGACTTAGACCCCTGGAAACTGCTGCAGGAGCATATCTTGGCAGATTATACAAATCACGAGGGACACGAGTTGACGTTGCGTGTCCTATACAGGTTATTTGGAGAGGCAGAAGTGGAACACGATTTCTTTTCTTCTACAAACGCTACTTCTGTTTACGAAAAGTTCCTTTTAACTGTGGTAGAAACACTTAGAGATTCTTTACCACCGTCAGATAAATCATTAAGTAGATTGCTTGGTGAGGTTCCATCTTTACCAAATTCAGTTTTGAAGTTATTGGAGTGCATGTGTTCGCCTGAAAATTGCGACAAAACTGAGAAGGAAGTACAAGGTGGTGATCGAGTGACTCAAGGTCTCAGTACTGTATGGAGCCTGATTTTGCTGAGGCCTCCTTTTCGAGATGGCTGCTTAAAAATTGCTCTACAGAGTGCAGTTCATCATCTGGAGGAAGTGCGTATGAAGGCTATACGTCTGGTTGCAAACAAGCTTTATCCGTTGTCAGCCATTGCCAAGCGAATTGAAGATTTTGCAATTGAAATGTTGCTTACTGTGAAAACTGATGATGCAACTGAAAGAACAGATGCTGATGGATCAAAAGCTGAATCCCAAAAGGATTCTGACTCAGAAAAACATTCGAATGAACCTCCAGCAGTGAGTGGCAACCAAGATATCTCCTCTGACACTCATCAATCATGCAATTCTCAAAGTATGTCACCGCTTTCAATTGCCGAGGCAGAGCGGTGTCTGTCATTGTATTTTGCTCTGTGCACAAAGAAGCACTCTCTTTTTCGCCAAATATTCGCTGTGTATGGAAATGCATCAAAGGCGGTTAAGCAGGCAGTTAATCATCATATTCCAAAACTAGTGCGTACAATGGGCTCATCACGAGATCTTCTTGATATTATTTCAGACCCTCCGTCTGGAAGCGAGAACCTCCTGATGCAGGTTTTGCATACACTGACAGATGGGGCAGTTCCCTCTCAAGAGCTGATATTTACCATTAGGAAGTTATATGATTCAAAACTGAAGGACATAGAGATTCTCATTCCGATATTACCATTTATACCAAAAGATGAGGTTATGTTAATCTTTCCCCAACTTGTGAAACTTCCCCTGGATAAGTTCCAAGCAGCACTAACTCGCACACTACAGGGATCATCCCATTCTGGTCCTCTTCTCGCTCCAGCTGAAGTATTGATTGCTATCCATGGGATTGATCCTGACAGAGATGGAATTCCATTAAAGAAGGTCACAGATGCATGCAATGCATGTTTTGAGCAGCGACAGATATTCAACCAACAAGTTCTTGCTAAAGTTCTGAATCAATTGGTTGAGCAGATTCCCCTTCCTTTACTGTTCATGCGTACAGTATTGCAAGCTATTGGTGCTTTTCCTGCACTGGTGGATTTTATAATGGAGATCCTCTCTCGACTTGTGAGCAAACAGATATGGAAATACCCAAAGTTGTGGGTGGGATTCCTGAAGTGCGCATTGTTGACAAAGCCTCAGTCATTTGGCGTGTTGCTTCAGCTACCTCCAGCACAGCTAGAAAATGCATTGAAGAGAACTGCAGCTCTGAAAGCACCCTTGGTTGCCCATGCTAGCCAACCAGATATCCGATCTTCACTTCCAAGGTCTATATTGGTAGTTTTGGGAATTGTTTCAGATTCTCAGGCACAAACAAGTCAGGCAAATACTGGAGATGCAAGCAACTCAGACAAGGAGGCAGTCACGGAGAAATCAAAAGAAGAATCATCTAGTGCTTGTTGA

Protein Analysis

1333

Amino Acids

144.52

Weight (kDa)

5.06

Isoelectric Point (pI)

51.7

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
SYMPK_PTA1_N PF11935 104 - 320 7.2e-36 Symplekin/PTA1 N-terminal
Symplekin_C PF12295 1088 - 1266 8.6e-65 Symplekin tight junction protein C terminal
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 2 cut(s) 1605, 3644
AasI GACNNNNNNGTC 1 cut(s) 68
Acc16I TGCGCA 1 cut(s) 3721
Acc36I ACCTGC 3 cut(s) 787, 1627, 3166
AccBSI CCGCTC 1 cut(s) 2971
AccI GTMKAC 1 cut(s) 388
AclWI GGATC 6 cut(s) 542, 815, 2830, 3394, 3443, 3646
AcoI YGGCCR 1 cut(s) 1965
AcsI RAATTY 6 cut(s) 212, 512, 596, 646, 2491, 3465
AcuI CTGAAG 7 cut(s) 167, 365, 1473, 3278, 3441, 3734, 3743
AcyI GRCGYC 2 cut(s) 1155, 1598
AdeI CACNNNGTG 1 cut(s) 1187
AfaI GTAC 8 cut(s) 907, 1539, 1555, 1672, 2559, 2593, 3103, 3598
AfiI CCNNNNNNNGG 3 cut(s) 485, 3152, 3175
AflIII ACRYGT 2 cut(s) 850, 1419
AgeI ACCGGT 1 cut(s) 192
AhdI GACNNNNNGTC 3 cut(s) 88, 2583, 3148
AhlI ACTAGT 2 cut(s) 335, 3094
AjnI CCWGG 7 cut(s) 478, 519, 912, 1444, 1816, 2246, 3345
AjuI GAANNNNNNNTTGG 4 cut(s) 1335, 1367, 3803, 3835
AleI CACNNNNGTG 2 cut(s) 396, 915
Alw21I GWGCWC 4 cut(s) 162, 865, 1123, 3002
Alw26I GTCTC 8 cut(s) 132, 720, 859, 1195, 1239, 1742, 1773, 2591
Alw44I GTGCAC 1 cut(s) 2998
AlwI GGATC 6 cut(s) 542, 815, 2830, 3394, 3443, 3646
AlwNI CAGNNNCTG 3 cut(s) 1859, 1939, 2816
Ama87I CYCGRG 1 cut(s) 1503
AoxI GGCC 3 cut(s) 318, 1965, 2618
ApaLI GTGCAC 1 cut(s) 2998
ApoI RAATTY 6 cut(s) 212, 512, 596, 646, 2491, 3465
ArsI GACNNNNNNTTYG 2 cut(s) 3725, 3757
AseI ATTAAT 4 cut(s) 288, 747, 840, 1011
AsiGI ACCGGT 1 cut(s) 192
Asp700I GAANNNNTTC 2 cut(s) 528, 3892
AspLEI GCGC 3 cut(s) 1325, 2086, 3722
AspS9I GGNCC 3 cut(s) 319, 1292, 3401
AsuHPI GGTGA 9 cut(s) 902, 1295, 1352, 1664, 1719, 1734, 2483, 2579, 2937
AsuII TTCGAA 2 cut(s) 2194, 2867
AsuNHI GCTAGC 2 cut(s) 1396, 3833
AvaI CYCGRG 1 cut(s) 1503
AvaII GGWCC 2 cut(s) 1292, 3401
BaeGI GKGCMC 1 cut(s) 3002
BanII GRGCYC 6 cut(s) 162, 570, 680, 1065, 1824, 3113
BauI CACGAG 3 cut(s) 2291, 2300, 3117
BbsI GAAGAC 1 cut(s) 1158
Bbv12I GWGCWC 4 cut(s) 162, 865, 1123, 3002
BbvCI CCTCAGC 3 cut(s) 1143, 1401, 2615
BccI CCATC 9 cut(s) 962, 1405, 1963, 2064, 2488, 2627, 2813, 3191, 3455
BceAI ACGGC 2 cut(s) 53, 262
BcgI CGANNNNNNTGC 6 cut(s) 1814, 1848, 1857, 1891, 2619, 2653
BciT130I CCWGG 7 cut(s) 480, 521, 914, 1446, 1818, 2248, 3347
BciVI GTATCC 1 cut(s) 840
BclI TGATCA 1 cut(s) 688
BcoDI GTCTC 8 cut(s) 132, 720, 859, 1195, 1239, 1742, 1773, 2591
BcuI ACTAGT 2 cut(s) 335, 3094
BfmI CTRYAG 4 cut(s) 2258, 2654, 3380, 3801
BfoI RGCGCY 1 cut(s) 2087
BfuAI ACCTGC 3 cut(s) 787, 1627, 3166
BfuI GTATCC 1 cut(s) 840
BglII AGATCT 1 cut(s) 3121
BlpI GCTNAGC 1 cut(s) 1985
BmcAI AGTACT 2 cut(s) 1555, 2593
Bme1390I CCNGG 7 cut(s) 480, 521, 914, 1446, 1818, 2248, 3347
Bme18I GGWCC 2 cut(s) 1292, 3401
BmeRI GACNNNNNGTC 3 cut(s) 88, 2583, 3148
BmeT110I CYCGRG 1 cut(s) 1503
BmgT120I GGNCC 3 cut(s) 319, 1292, 3401
BmiI GGNNCC 6 cut(s) 559, 701, 1062, 2185, 2478, 2603
BmrFI CCNGG 7 cut(s) 480, 521, 914, 1446, 1818, 2248, 3347
BmtI GCTAGC 2 cut(s) 1400, 3837
BpiI GAAGAC 1 cut(s) 1158
BplI GAGNNNNNCTC 6 cut(s) 114, 146, 446, 478, 3641, 3673
BpmI CTGGAG 7 cut(s) 1026, 1467, 2696, 2862, 3399, 3753, 3951
Bpu10I CCTNAGC 4 cut(s) 1143, 1335, 1401, 2615
Bpu1102I GCTNAGC 1 cut(s) 1985
Bpu14I TTCGAA 2 cut(s) 2194, 2867
BpuEI CTTGAG 6 cut(s) 437, 1221, 1360, 1823, 2565, 3198
BsaAI YACGTR 2 cut(s) 253, 851
BsaBI GATNNNNATC 2 cut(s) 1587, 3434
BsaHI GRCGYC 2 cut(s) 1155, 1598
BsaI GGTCTC 2 cut(s) 132, 2591
BsaWI WCCGGW 2 cut(s) 192, 1123
Bsc4I CCNNNNNNNGG 3 cut(s) 485, 3152, 3175
Bse118I RCCGGY 4 cut(s) 102, 192, 310, 2086
Bse1I ACTGG 6 cut(s) 998, 1043, 1717, 1902, 3636, 3934
Bse3DI GCAATG 3 cut(s) 680, 2736, 3502
Bse8I GATNNNNATC 2 cut(s) 1587, 3434
BseBI CCWGG 7 cut(s) 480, 521, 914, 1446, 1818, 2248, 3347
BseGI GGATG 8 cut(s) 441, 625, 1153, 1588, 1868, 1894, 2094, 3389
BseJI GATNNNNATC 2 cut(s) 1587, 3434
BseLI CCNNNNNNNGG 3 cut(s) 485, 3152, 3175
BseMI GCAATG 3 cut(s) 680, 2736, 3502
BseNI ACTGG 6 cut(s) 998, 1043, 1717, 1902, 3636, 3934
BseRI GAGGAG 4 cut(s) 467, 1073, 1994, 2896
BseSI GKGCMC 1 cut(s) 3002
BseX3I CGGCCG 1 cut(s) 1965
BseYI CCCAGC 1 cut(s) 571
BsgI GTGCAG 5 cut(s) 906, 1319, 1557, 2682, 3612
Bsh1285I CGRYCG 4 cut(s) 103, 193, 1968, 2119
BshFI GGCC 3 cut(s) 320, 1967, 2620
BshTI ACCGGT 1 cut(s) 192
BsiEI CGRYCG 4 cut(s) 103, 193, 1968, 2119
BsiHKAI GWGCWC 4 cut(s) 162, 865, 1123, 3002
BsiHKCI CYCGRG 1 cut(s) 1503
BsiSI CCGG 6 cut(s) 103, 133, 193, 311, 1124, 2087
BslFI GGGAC 3 cut(s) 186, 1273, 2310
BslI CCNNNNNNNGG 3 cut(s) 485, 3152, 3175
BsmAI GTCTC 8 cut(s) 132, 720, 859, 1195, 1239, 1742, 1773, 2591
BsmBI CGTCTC 1 cut(s) 1773
BsmFI GGGAC 3 cut(s) 186, 1273, 2310
BsnI GGCC 3 cut(s) 320, 1967, 2620
Bso31I GGTCTC 2 cut(s) 132, 2591
BsoBI CYCGRG 1 cut(s) 1503
Bsp119I TTCGAA 2 cut(s) 2194, 2867
Bsp1286I GDGCHC 9 cut(s) 162, 570, 680, 865, 1065, 1123, 1824, 3002, 3113
Bsp1720I GCTNAGC 1 cut(s) 1985
Bsp19I CCATGG 1 cut(s) 3439
BspANI GGCC 3 cut(s) 320, 1967, 2620
BspHI TCATGA 1 cut(s) 577
BspLI GGNNCC 6 cut(s) 559, 701, 1062, 2185, 2478, 2603
BspMAI CTGCAG 2 cut(s) 2262, 3805
BspMI ACCTGC 3 cut(s) 787, 1627, 3166
BspOI GCTAGC 2 cut(s) 1400, 3837
BspPI GGATC 6 cut(s) 542, 815, 2830, 3394, 3443, 3646
BspQI GCTCTTC 1 cut(s) 1626
BspT104I TTCGAA 2 cut(s) 2194, 2867
BspTNI GGTCTC 2 cut(s) 132, 2591
BsrBI CCGCTC 1 cut(s) 2971
BsrDI GCAATG 3 cut(s) 680, 2736, 3502
BsrFI RCCGGY 4 cut(s) 102, 192, 310, 2086
BsrI ACTGG 6 cut(s) 998, 1043, 1717, 1902, 3636, 3934
BssAI RCCGGY 4 cut(s) 102, 192, 310, 2086
BssNI GRCGYC 2 cut(s) 1155, 1598
BssSI CACGAG 3 cut(s) 2291, 2300, 3117
BssT1I CCWWGG 5 cut(s) 1990, 2232, 3439, 3819, 3863
Bst2BI CACGAG 3 cut(s) 2291, 2300, 3117
Bst2UI CCWGG 7 cut(s) 480, 521, 914, 1446, 1818, 2248, 3347
Bst6I CTCTTC 8 cut(s) 179, 1050, 1626, 1776, 1879, 2103, 3411, 3788
BstACI GRCGYC 2 cut(s) 1155, 1598
BstAPI GCANNNNNTGC 6 cut(s) 869, 1331, 1939, 2003, 3181, 3497
BstBAI YACGTR 2 cut(s) 253, 851
BstBI TTCGAA 2 cut(s) 2194, 2867
BstDSI CCRYGG 2 cut(s) 926, 3439
BstENI CCTNNNNNAGG 1 cut(s) 3173
BstF5I GGATG 8 cut(s) 441, 625, 1153, 1588, 1868, 1894, 2094, 3389
BstH2I RGCGCY 1 cut(s) 2087
BstHHI GCGC 3 cut(s) 1325, 2086, 3722
BstMAI GTCTC 8 cut(s) 132, 720, 859, 1195, 1239, 1742, 1773, 2591
BstMCI CGRYCG 4 cut(s) 103, 193, 1968, 2119
BstNI CCWGG 7 cut(s) 480, 521, 914, 1446, 1818, 2248, 3347
BstNSI RCATGY 6 cut(s) 989, 1396, 1423, 2521, 3495, 3504
BstSCI CCNGG 7 cut(s) 478, 519, 912, 1444, 1816, 2246, 3345
BstSFI CTRYAG 4 cut(s) 2258, 2654, 3380, 3801
BstSLI GKGCMC 1 cut(s) 3002
BstV2I GAAGAC 1 cut(s) 1158
BstX2I RGATCY 2 cut(s) 3121, 3651
BstXI CCANNNNNNTGG 1 cut(s) 3699
BstYI RGATCY 2 cut(s) 3121, 3651
BstZI CGGCCG 1 cut(s) 1965
BsuI GTATCC 1 cut(s) 840
BsuRI GGCC 3 cut(s) 320, 1967, 2620
BtgI CCRYGG 2 cut(s) 926, 3439
BtgZI GCGATG 2 cut(s) 31, 315
BtsCI GGATG 8 cut(s) 441, 625, 1153, 1588, 1868, 1894, 2094, 3389
BtsI GCAGTG 2 cut(s) 1937, 2889
BtsIMutI CAGTG 4 cut(s) 1937, 2889, 3188, 3629
BveI ACCTGC 3 cut(s) 787, 1627, 3166
CaiI CAGNNNCTG 3 cut(s) 1859, 1939, 2816
CciI TCATGA 1 cut(s) 577
CfoI GCGC 3 cut(s) 1325, 2086, 3722
Cfr10I RCCGGY 4 cut(s) 102, 192, 310, 2086
Cfr13I GGNCC 3 cut(s) 319, 1292, 3401
CseI GACGC 2 cut(s) 1163, 1587
Csp6I GTAC 8 cut(s) 906, 1538, 1554, 1671, 2558, 2592, 3102, 3597
CspAI ACCGGT 1 cut(s) 192
CviQI GTAC 8 cut(s) 906, 1538, 1554, 1671, 2558, 2592, 3102, 3597
DraIII CACNNNGTG 1 cut(s) 1187
DrdI GACNNNNNNGTC 1 cut(s) 68
DriI GACNNNNNGTC 3 cut(s) 88, 2583, 3148
DseDI GACNNNNNNGTC 1 cut(s) 68
EaeI YGGCCR 1 cut(s) 1965
EagI CGGCCG 1 cut(s) 1965
Eam1104I CTCTTC 8 cut(s) 179, 1050, 1626, 1776, 1879, 2103, 3411, 3788
Eam1105I GACNNNNNGTC 3 cut(s) 88, 2583, 3148
EarI CTCTTC 8 cut(s) 179, 1050, 1626, 1776, 1879, 2103, 3411, 3788
EciI GGCGGA 1 cut(s) 55
Ecl136II GAGCTC 1 cut(s) 160
EclXI CGGCCG 1 cut(s) 1965
Eco130I CCWWGG 5 cut(s) 1990, 2232, 3439, 3819, 3863
Eco147I AGGCCT 1 cut(s) 2620
Eco24I GRGCYC 6 cut(s) 162, 570, 680, 1065, 1824, 3113
Eco31I GGTCTC 2 cut(s) 132, 2591
Eco32I GATATC 3 cut(s) 2025, 2902, 3847
Eco47I GGWCC 2 cut(s) 1292, 3401
Eco52I CGGCCG 1 cut(s) 1965
Eco53kI GAGCTC 1 cut(s) 160
Eco57I CTGAAG 7 cut(s) 167, 365, 1473, 3278, 3441, 3734, 3743
Eco88I CYCGRG 1 cut(s) 1503
EcoICRI GAGCTC 1 cut(s) 160
EcoNI CCTNNNNNAGG 1 cut(s) 3173
EcoRI GAATTC 1 cut(s) 3465
EcoRII CCWGG 7 cut(s) 478, 519, 912, 1444, 1816, 2246, 3345
EcoRV GATATC 3 cut(s) 2025, 2902, 3847
EcoT14I CCWWGG 5 cut(s) 1990, 2232, 3439, 3819, 3863
EcoT22I ATGCAT 4 cut(s) 3052, 3493, 3502, 3790
EcoT38I GRGCYC 6 cut(s) 162, 570, 680, 1065, 1824, 3113
ErhI CCWWGG 5 cut(s) 1990, 2232, 3439, 3819, 3863
Esp3I CGTCTC 1 cut(s) 1773
FalI AAGNNNNNCTT 2 cut(s) 516, 548
FaqI GGGAC 3 cut(s) 186, 1273, 2310
FauI CCCGC 2 cut(s) 329, 2150
FbaI TGATCA 1 cut(s) 688
FblI GTMKAC 1 cut(s) 388
FokI GGATG 8 cut(s) 448, 612, 1160, 1595, 1855, 1901, 2081, 3376
FriOI GRGCYC 6 cut(s) 162, 570, 680, 1065, 1824, 3113
FspAI RTGCGCAY 1 cut(s) 3721
FspI TGCGCA 1 cut(s) 3721
GlaI GCGC 3 cut(s) 1324, 2085, 3721
GsaI CCCAGC 1 cut(s) 575
GsuI CTGGAG 7 cut(s) 1026, 1467, 2696, 2862, 3399, 3753, 3951
HaeII RGCGCY 1 cut(s) 2087
HaeIII GGCC 3 cut(s) 320, 1967, 2620
HapII CCGG 6 cut(s) 103, 133, 193, 311, 1124, 2087
HgaI GACGC 2 cut(s) 1163, 1587
HhaI GCGC 3 cut(s) 1325, 2086, 3722
Hin1I GRCGYC 2 cut(s) 1155, 1598
Hin6I GCGC 3 cut(s) 1323, 2084, 3720
HinP1I GCGC 3 cut(s) 1323, 2084, 3720
HincII GTYRAC 5 cut(s) 954, 2014, 2052, 2307, 3729
HindII GTYRAC 5 cut(s) 954, 2014, 2052, 2307, 3729
HindIII AAGCTT 1 cut(s) 2717
HpaII CCGG 6 cut(s) 103, 133, 193, 311, 1124, 2087
HphI GGTGA 9 cut(s) 902, 1295, 1352, 1664, 1719, 1734, 2483, 2579, 2937
Hpy99I CGWCG 3 cut(s) 74, 77, 283
HpyCH4IV ACGT 4 cut(s) 252, 850, 2309, 2701
HpySE526I ACGT 4 cut(s) 252, 850, 2309, 2701
Hsp92I GRCGYC 2 cut(s) 1155, 1598
HspAI GCGC 3 cut(s) 1323, 2084, 3720
Ksp22I TGATCA 1 cut(s) 688
LguI GCTCTTC 1 cut(s) 1626
MaeII ACGT 4 cut(s) 252, 850, 2309, 2701
MaeIII GTNAC 5 cut(s) 1639, 2575, 2943, 3481, 3961
MbiI CCGCTC 1 cut(s) 2971
MfeI CAATTG 7 cut(s) 113, 587, 654, 762, 2763, 2955, 3557
MflI RGATCY 2 cut(s) 3121, 3651
MhlI GDGCHC 9 cut(s) 162, 570, 680, 865, 1065, 1123, 1824, 3002, 3113
MlyI GAGTC 7 cut(s) 56, 428, 1515, 1936, 2229, 2572, 2846
MmeI TCCRAC 4 cut(s) 60, 213, 384, 622
Mph1103I ATGCAT 4 cut(s) 3052, 3493, 3502, 3790
MroXI GAANNNNTTC 2 cut(s) 528, 3892
MslI CAYNNNNRTG 6 cut(s) 14, 224, 396, 737, 915, 2868
MspA1I CMGCKG 2 cut(s) 2000, 3419
MspI CCGG 6 cut(s) 103, 133, 193, 311, 1124, 2087
MspR9I CCNGG 7 cut(s) 480, 521, 914, 1446, 1818, 2248, 3347
MunI CAATTG 7 cut(s) 113, 587, 654, 762, 2763, 2955, 3557
MvaI CCWGG 7 cut(s) 480, 521, 914, 1446, 1818, 2248, 3347
NcoI CCATGG 1 cut(s) 3439
NheI GCTAGC 2 cut(s) 1396, 3833
NlaIV GGNNCC 6 cut(s) 559, 701, 1062, 2185, 2478, 2603
NmeAIII GCCGAG 2 cut(s) 210, 2986
NmuCI GTSAC 4 cut(s) 2575, 2943, 3481, 3961
NsbI TGCGCA 1 cut(s) 3721
NsiI ATGCAT 4 cut(s) 3052, 3493, 3502, 3790
NspI RCATGY 6 cut(s) 989, 1396, 1423, 2521, 3495, 3504
NspV TTCGAA 2 cut(s) 2194, 2867
OliI CACNNNNGTG 2 cut(s) 396, 915
PaeI GCATGC 2 cut(s) 989, 3495
PaeR7I CTCGAG 1 cut(s) 1503
PagI TCATGA 1 cut(s) 577
PceI AGGCCT 1 cut(s) 2620
PciI ACATGT 1 cut(s) 1419
PciSI GCTCTTC 1 cut(s) 1626
PcsI WCGNNNNNNNCGW 3 cut(s) 78, 258, 2298
PdmI GAANNNNTTC 2 cut(s) 528, 3892
PfoI TCCNGGA 2 cut(s) 519, 1444
PinAI ACCGGT 1 cut(s) 192
Ple19I CGATCG 1 cut(s) 2119
PleI GAGTC 7 cut(s) 56, 427, 1514, 1935, 2228, 2572, 2846
PpsI GAGTC 7 cut(s) 56, 427, 1514, 1935, 2228, 2572, 2846
Ppu21I YACGTR 2 cut(s) 253, 851
PscI ACATGT 1 cut(s) 1419
PshBI ATTAAT 4 cut(s) 288, 747, 840, 1011
PsiI TTATAA 2 cut(s) 1605, 3644
Psp124BI GAGCTC 1 cut(s) 162
Psp6I CCWGG 7 cut(s) 478, 519, 912, 1444, 1816, 2246, 3345
PspFI CCCAGC 1 cut(s) 571
PspGI CCWGG 7 cut(s) 478, 519, 912, 1444, 1816, 2246, 3345
PspN4I GGNNCC 6 cut(s) 559, 701, 1062, 2185, 2478, 2603
PspPI GGNCC 3 cut(s) 319, 1292, 3401
PstI CTGCAG 2 cut(s) 2262, 3805
PstNI CAGNNNCTG 3 cut(s) 1859, 1939, 2816
PsuI RGATCY 2 cut(s) 3121, 3651
PvuI CGATCG 1 cut(s) 2119
PvuII CAGCTG 2 cut(s) 2000, 3419
RsaI GTAC 8 cut(s) 907, 1539, 1555, 1672, 2559, 2593, 3103, 3598
RsaNI GTAC 8 cut(s) 906, 1538, 1554, 1671, 2558, 2592, 3102, 3597
RseI CAYNNNNRTG 6 cut(s) 14, 224, 396, 737, 915, 2868
SacI GAGCTC 1 cut(s) 162
SapI GCTCTTC 1 cut(s) 1626
Sau96I GGNCC 3 cut(s) 319, 1292, 3401
ScaI AGTACT 2 cut(s) 1555, 2593
SchI GAGTC 7 cut(s) 56, 428, 1515, 1936, 2229, 2572, 2846
ScrFI CCNGG 7 cut(s) 480, 521, 914, 1446, 1818, 2248, 3347
SduI GDGCHC 9 cut(s) 162, 570, 680, 865, 1065, 1123, 1824, 3002, 3113
SfcI CTRYAG 4 cut(s) 2258, 2654, 3380, 3801
Sfr274I CTCGAG 1 cut(s) 1503
SfuI TTCGAA 2 cut(s) 2194, 2867
SinI GGWCC 2 cut(s) 1292, 3401
SlaI CTCGAG 1 cut(s) 1503
SmiMI CAYNNNNRTG 6 cut(s) 14, 224, 396, 737, 915, 2868
SmlI CTYRAG 7 cut(s) 416, 1236, 1375, 1503, 1802, 2580, 3213
SmoI CTYRAG 7 cut(s) 416, 1236, 1375, 1503, 1802, 2580, 3213
SpeI ACTAGT 2 cut(s) 335, 3094
SphI GCATGC 2 cut(s) 989, 3495
SseBI AGGCCT 1 cut(s) 2620
SspI AATATT 3 cut(s) 1009, 1225, 3030
SstI GAGCTC 1 cut(s) 162
StuI AGGCCT 1 cut(s) 2620
StyD4I CCNGG 7 cut(s) 478, 519, 912, 1444, 1816, 2246, 3345
StyI CCWWGG 5 cut(s) 1990, 2232, 3439, 3819, 3863
TaiI ACGT 4 cut(s) 255, 853, 2312, 2704
TatI WGTACW 6 cut(s) 905, 1537, 1553, 1670, 2557, 2591
TauI GCSGC 2 cut(s) 80, 1497
TscAI CASTG 4 cut(s) 1944, 2889, 3195, 3636
TseFI GTSAC 4 cut(s) 2575, 2943, 3481, 3961
Tsp45I GTSAC 4 cut(s) 2575, 2943, 3481, 3961
TspGWI ACGGA 5 cut(s) 1755, 1764, 2715, 3138, 3980
TspRI CASTG 4 cut(s) 1944, 2889, 3195, 3636
VneI GTGCAC 1 cut(s) 2998
VpaK11BI GGWCC 2 cut(s) 1292, 3401
VspI ATTAAT 4 cut(s) 288, 747, 840, 1011
XagI CCTNNNNNAGG 1 cut(s) 3173
XapI RAATTY 6 cut(s) 212, 512, 596, 646, 2491, 3465
XbaI TCTAGA 2 cut(s) 364, 1906
XceI RCATGY 6 cut(s) 989, 1396, 1423, 2521, 3495, 3504
XhoI CTCGAG 1 cut(s) 1503
XmiI GTMKAC 1 cut(s) 388
XmnI GAANNNNTTC 2 cut(s) 528, 3892
ZrmI AGTACT 2 cut(s) 1555, 2593
Zsp2I ATGCAT 4 cut(s) 3052, 3493, 3502, 3790
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.