Rmu_sc0009082.1_g000006

PLATZ transcription factor

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0009082.1
OG0002320
Physical Location & Seq
Forward (+)
23910 .. 24963
1054 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0009082.1_g000006.1.cds

Sequence Viewer

Length: 468 bp
atgataaggaggtcttcttaccatgatgtggtgagggtttcggagatacaaaaggttctggacattagtggggttcagacctatgtgataaacagtgccagagttctgttcttgaatgagaggcctcaaccaaaagctggaatcaaaggagtcccccacatttgtgaaatctgtagcagaggcctcttggacccatttcgattctgctctctgggttgtaagcttgtgggaataaagaggaatggggatgccaactttacattggaggcaaggaatgaagagggaaatggaaatggaacaagagaaggaatgataacatcatcaacaacaaggagagtgacaatgggggaggaagagttgcgtgaaggctcacaacaagacatgtacccggacacgcctccaccacctccttcttcaactacaaggagaaggaaaggcattcctcatagggcaccatttgggacctaa
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
PLATZ

Protein Analysis

155

Amino Acids

17.24

Weight (kDa)

9.45

Isoelectric Point (pI)

57.32

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 451
AccB7I CCANNNNNTGG 2 cut(s) 28, 137
AfaI GTAC 1 cut(s) 386
AfiI CCNNNNNNNGG 2 cut(s) 28, 137
AflIII ACRYGT 1 cut(s) 381
AgsI TTSAA 2 cut(s) 115, 417
AleI CACNNNNGTG 1 cut(s) 162
AluBI AGCT 2 cut(s) 137, 223
AluI AGCT 2 cut(s) 137, 223
AoxI GGCC 2 cut(s) 122, 181
AspS9I GGNCC 2 cut(s) 190, 462
AsuC2I CCSGG 1 cut(s) 389
AsuHPI GGTGA 1 cut(s) 43
AvaII GGWCC 2 cut(s) 190, 462
BaeGI GKGCMC 1 cut(s) 454
BanI GGYRCC 1 cut(s) 451
BbsI GAAGAC 1 cut(s) 6
BcnI CCSGG 1 cut(s) 389
BfmI CTRYAG 1 cut(s) 172
Bme1390I CCNGG 1 cut(s) 389
Bme18I GGWCC 2 cut(s) 190, 462
BmgT120I GGNCC 2 cut(s) 190, 462
BmiI GGNNCC 3 cut(s) 192, 453, 463
BmrFI CCNGG 1 cut(s) 389
BmsI GCATC 1 cut(s) 238
BpiI GAAGAC 1 cut(s) 6
BpuMI CCSGG 1 cut(s) 389
BsaXI ACNNNNNCTCC 2 cut(s) 341, 371
Bsc4I CCNNNNNNNGG 2 cut(s) 28, 137
BseGI GGATG 1 cut(s) 253
BseLI CCNNNNNNNGG 2 cut(s) 28, 137
BseSI GKGCMC 1 cut(s) 454
BshFI GGCC 2 cut(s) 124, 183
BshNI GGYRCC 1 cut(s) 451
BsiSI CCGG 1 cut(s) 389
BslFI GGGAC 1 cut(s) 137
BslI CCNNNNNNNGG 2 cut(s) 28, 137
BsmFI GGGAC 1 cut(s) 137
BsmI GAATGC 1 cut(s) 438
BsnI GGCC 2 cut(s) 124, 183
Bsp1286I GDGCHC 1 cut(s) 454
BspANI GGCC 2 cut(s) 124, 183
BspLI GGNNCC 3 cut(s) 192, 453, 463
BspT107I GGYRCC 1 cut(s) 451
Bst4CI ACNGT 1 cut(s) 95
Bst6I CTCTTC 2 cut(s) 273, 348
BstF5I GGATG 1 cut(s) 253
BstNSI RCATGY 1 cut(s) 385
BstSCI CCNGG 1 cut(s) 387
BstSFI CTRYAG 1 cut(s) 172
BstSLI GKGCMC 1 cut(s) 454
BstV2I GAAGAC 1 cut(s) 6
BsuRI GGCC 2 cut(s) 124, 183
BtsCI GGATG 1 cut(s) 253
BtsIMutI CAGTG 1 cut(s) 100
Cfr13I GGNCC 2 cut(s) 190, 462
Csp6I GTAC 1 cut(s) 385
CviAII CATG 2 cut(s) 23, 382
CviJI RGCY 5 cut(s) 124, 137, 183, 223, 369
CviKI_1 RGCY 5 cut(s) 124, 137, 183, 223, 369
CviQI GTAC 1 cut(s) 385
Eam1104I CTCTTC 2 cut(s) 273, 348
EarI CTCTTC 2 cut(s) 273, 348
Eco147I AGGCCT 2 cut(s) 124, 183
Eco47I GGWCC 2 cut(s) 190, 462
EcoO109I RGGNCCY 1 cut(s) 462
FaeI CATG 2 cut(s) 26, 385
FaiI YATR 4 cut(s) 24, 84, 383, 447
FalI AAGNNNNNCTT 1 cut(s) 30
FaqI GGGAC 1 cut(s) 137
FatI CATG 2 cut(s) 22, 381
FokI GGATG 1 cut(s) 260
HaeIII GGCC 2 cut(s) 124, 183
HapII CCGG 1 cut(s) 389
Hin1II CATG 2 cut(s) 26, 385
HindIII AAGCTT 1 cut(s) 221
HinfI GANTC 3 cut(s) 141, 150, 201
HpaII CCGG 1 cut(s) 389
HphI GGTGA 1 cut(s) 43
Hpy188I TCNGA 2 cut(s) 43, 78
Hpy188III TCNNGA 2 cut(s) 59, 112
HpyAV CCTTC 4 cut(s) 299, 359, 420, 423
HpyCH4III ACNGT 1 cut(s) 95
Hsp92II CATG 2 cut(s) 26, 385
LpnPI CCDG 5 cut(s) 44, 112, 123, 197, 402
LweI GCATC 1 cut(s) 238
MaeIII GTNAC 1 cut(s) 337
MboII GAAGA 4 cut(s) 6, 290, 365, 405
MhlI GDGCHC 1 cut(s) 454
MlyI GAGTC 1 cut(s) 159
MslI CAYNNNNRTG 1 cut(s) 162
MspI CCGG 1 cut(s) 389
MspR9I CCNGG 1 cut(s) 389
Mva1269I GAATGC 1 cut(s) 438
NciI CCSGG 1 cut(s) 389
NlaIII CATG 2 cut(s) 26, 385
NlaIV GGNNCC 3 cut(s) 192, 453, 463
NmuCI GTSAC 1 cut(s) 337
NspI RCATGY 1 cut(s) 385
OliI CACNNNNGTG 1 cut(s) 162
PceI AGGCCT 2 cut(s) 124, 183
PciI ACATGT 1 cut(s) 381
PctI GAATGC 1 cut(s) 438
PfeI GAWTC 2 cut(s) 141, 201
PflMI CCANNNNNTGG 2 cut(s) 28, 137
PleI GAGTC 1 cut(s) 158
PpsI GAGTC 1 cut(s) 158
PpuMI RGGWCCY 1 cut(s) 462
PscI ACATGT 1 cut(s) 381
Psp5II RGGWCCY 1 cut(s) 462
PspN4I GGNNCC 3 cut(s) 192, 453, 463
PspPI GGNCC 2 cut(s) 190, 462
PspPPI RGGWCCY 1 cut(s) 462
RsaI GTAC 1 cut(s) 386
RsaNI GTAC 1 cut(s) 385
RseI CAYNNNNRTG 1 cut(s) 162
Sau96I GGNCC 2 cut(s) 190, 462
SchI GAGTC 1 cut(s) 159
ScrFI CCNGG 1 cut(s) 389
SduI GDGCHC 1 cut(s) 454
SetI ASST 7 cut(s) 14, 57, 83, 139, 225, 409, 467
SfaNI GCATC 1 cut(s) 238
SfcI CTRYAG 1 cut(s) 172
SinI GGWCC 2 cut(s) 190, 462
SmiMI CAYNNNNRTG 1 cut(s) 162
SseBI AGGCCT 2 cut(s) 124, 183
StuI AGGCCT 2 cut(s) 124, 183
StyD4I CCNGG 1 cut(s) 387
TaaI ACNGT 1 cut(s) 95
TaqI TCGA 1 cut(s) 199
TfiI GAWTC 2 cut(s) 141, 201
TscAI CASTG 1 cut(s) 100
TseFI GTSAC 1 cut(s) 337
Tsp45I GTSAC 1 cut(s) 337
TspDTI ATGAA 1 cut(s) 291
TspRI CASTG 1 cut(s) 100
Van91I CCANNNNNTGG 2 cut(s) 28, 137
VpaK11BI GGWCC 2 cut(s) 190, 462
XceI RCATGY 1 cut(s) 385
XcmI CCANNNNNNNNNTGG 1 cut(s) 259
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.