MD03G1129200.v1.1

PLATZ transcription factor

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr03
OG0002320
Physical Location & Seq
Reverse (-)
12600852 .. 12604162
3311 bp
Loading structure...
UTR
Exon/CDS
Intron
MD03G1129200.v1.1.491

Sequence Viewer

Length: 579 bp
ATGTACTGCTTAGATTGCAACAATGTCGCATTCTGCTTGTATTGTAAATCATCAAGACACAAAGATCACCAAGTTATTCAGATCAGACGGTCATCGTATCACAATGTTGTGAGGGTATCTGAGATTCAGAAGGTGTTAGACATAAGCGGAGTTCAGACTTATGTGATAAACAGTGCGAGAGTGTTGTTTCTTAACCAGAGGCCTCATGAGCCTAAAACTGCCGTTAAAGGGGGCTCACATATCTGTGAAATATGTGCGAGATGTCTCGGGGACCCTGTTCGTTTTTGTTCATTGGGATGCAAGCTTGAGGGACTAAAGAAAAATGGGGAAGCCACCTCAGCGAAGAAAGAAGAGGAGGGAAGAAAGGAAGGGAAAAAGAGAAGGTTACCATCGAAAGAATTAGAAGATCAAACGCAACAAGACATGCACCAAAGCACTCTAACTCCAACTCCACCACCTCATCCAAATTTAAGGGAAAGGAGAAGAAAGGGCATACCTCGTAGGGCACCTTTAATATGGAACAAGGATGGCATTCATTCAAGTGGAAGAATCTACCAACAACTTGACGATAATCAGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
PLATZ

Protein Analysis

193

Amino Acids

21.97

Weight (kDa)

9.51

Isoelectric Point (pI)

64.26

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PLATZ PF04640 29 - 102 4.8e-29 PLATZ transcription factor
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 505
AciI CCGC 1 cut(s) 147
AcsI RAATTY 1 cut(s) 466
AfaI GTAC 1 cut(s) 5
AfiI CCNNNNNNNGG 1 cut(s) 228
AgsI TTSAA 1 cut(s) 540
AluBI AGCT 1 cut(s) 304
AluI AGCT 1 cut(s) 304
Alw26I GTCTC 1 cut(s) 269
Ama87I CYCGRG 1 cut(s) 266
AoxI GGCC 1 cut(s) 200
ApoI RAATTY 1 cut(s) 466
AspS9I GGNCC 1 cut(s) 271
AsuHPI GGTGA 1 cut(s) 59
AvaI CYCGRG 1 cut(s) 266
AvaII GGWCC 1 cut(s) 271
BaeGI GKGCMC 1 cut(s) 508
BanI GGYRCC 1 cut(s) 505
BanII GRGCYC 1 cut(s) 236
BbvCI CCTCAGC 1 cut(s) 337
BccI CCATC 2 cut(s) 397, 521
BceAI ACGGC 1 cut(s) 206
BcgI CGANNNNNNTGC 2 cut(s) 7, 41
BcoDI GTCTC 1 cut(s) 269
Bme18I GGWCC 1 cut(s) 271
BmeT110I CYCGRG 1 cut(s) 266
BmgT120I GGNCC 1 cut(s) 271
BmiI GGNNCC 3 cut(s) 272, 273, 507
BmsI GCATC 1 cut(s) 287
Bpu10I CCTNAGC 1 cut(s) 337
BpuEI CTTGAG 1 cut(s) 326
BsaXI ACNNNNNCTCC 4 cut(s) 427, 433, 457, 463
Bsc4I CCNNNNNNNGG 1 cut(s) 228
BseGI GGATG 3 cut(s) 302, 460, 532
BseLI CCNNNNNNNGG 1 cut(s) 228
BseMII CTCAG 2 cut(s) 111, 351
BseRI GAGGAG 1 cut(s) 368
BseSI GKGCMC 1 cut(s) 508
BshFI GGCC 1 cut(s) 202
BshNI GGYRCC 1 cut(s) 505
BsiHKCI CYCGRG 1 cut(s) 266
BslFI GGGAC 2 cut(s) 284, 324
BslI CCNNNNNNNGG 1 cut(s) 228
BsmAI GTCTC 1 cut(s) 269
BsmFI GGGAC 2 cut(s) 284, 324
BsmI GAATGC 2 cut(s) 29, 531
BsnI GGCC 1 cut(s) 202
BsoBI CYCGRG 1 cut(s) 266
Bsp1286I GDGCHC 2 cut(s) 236, 508
Bsp143I GATC 3 cut(s) 64, 81, 406
BspACI CCGC 1 cut(s) 147
BspANI GGCC 1 cut(s) 202
BspCNI CTCAG 2 cut(s) 112, 350
BspHI TCATGA 1 cut(s) 205
BspLI GGNNCC 3 cut(s) 272, 273, 507
BspT107I GGYRCC 1 cut(s) 505
BssMI GATC 3 cut(s) 64, 81, 406
Bst4CI ACNGT 2 cut(s) 90, 173
Bst6I CTCTTC 1 cut(s) 345
BstC8I GCNNGC 1 cut(s) 302
BstDEI CTNAG 3 cut(s) 10, 120, 337
BstEII GGTNACC 1 cut(s) 384
BstF5I GGATG 3 cut(s) 302, 460, 532
BstKTI GATC 3 cut(s) 67, 84, 409
BstMAI GTCTC 1 cut(s) 269
BstMBI GATC 3 cut(s) 64, 81, 406
BstMWI GCNNNNNNNGC 3 cut(s) 15, 208, 338
BstNSI RCATGY 1 cut(s) 427
BstPI GGTNACC 1 cut(s) 384
BstSLI GKGCMC 1 cut(s) 508
BsuRI GGCC 1 cut(s) 202
BtsCI GGATG 3 cut(s) 302, 460, 532
BtsIMutI CAGTG 1 cut(s) 178
Cac8I GCNNGC 1 cut(s) 302
CciI TCATGA 1 cut(s) 205
Cfr13I GGNCC 1 cut(s) 271
Csp6I GTAC 1 cut(s) 4
CviAII CATG 2 cut(s) 206, 424
CviJI RGCY 5 cut(s) 202, 211, 234, 304, 332
CviKI_1 RGCY 5 cut(s) 202, 211, 234, 304, 332
CviQI GTAC 1 cut(s) 4
DdeI CTNAG 3 cut(s) 10, 120, 337
DpnI GATC 3 cut(s) 66, 83, 408
DpnII GATC 3 cut(s) 64, 81, 406
Eam1104I CTCTTC 1 cut(s) 345
EarI CTCTTC 1 cut(s) 345
Eco147I AGGCCT 1 cut(s) 202
Eco24I GRGCYC 1 cut(s) 236
Eco47I GGWCC 1 cut(s) 271
Eco88I CYCGRG 1 cut(s) 266
Eco91I GGTNACC 1 cut(s) 384
EcoO109I RGGNCCY 1 cut(s) 271
EcoO65I GGTNACC 1 cut(s) 384
EcoT38I GRGCYC 1 cut(s) 236
FaeI CATG 2 cut(s) 209, 427
FaiI YATR 8 cut(s) 143, 162, 207, 240, 253, 425, 494, 517
FaqI GGGAC 2 cut(s) 284, 324
FatI CATG 2 cut(s) 205, 423
FokI GGATG 3 cut(s) 309, 447, 539
FriOI GRGCYC 1 cut(s) 236
HaeIII GGCC 1 cut(s) 202
Hin1II CATG 2 cut(s) 209, 427
HindIII AAGCTT 1 cut(s) 302
HinfI GANTC 2 cut(s) 124, 549
HphI GGTGA 1 cut(s) 59
Hpy188I TCNGA 5 cut(s) 81, 86, 121, 129, 156
Hpy188III TCNNGA 2 cut(s) 54, 206
HpyAV CCTTC 3 cut(s) 124, 362, 375
HpyCH4III ACNGT 2 cut(s) 90, 173
HpyCH4V TGCA 3 cut(s) 18, 300, 427
HpyF10VI GCNNNNNNNGC 3 cut(s) 15, 208, 338
HpyF3I CTNAG 3 cut(s) 10, 120, 337
Hsp92II CATG 2 cut(s) 209, 427
KflI GGGWCCC 1 cut(s) 271
Kzo9I GATC 3 cut(s) 64, 81, 406
LpnPI CCDG 2 cut(s) 209, 288
LweI GCATC 1 cut(s) 287
MaeIII GTNAC 1 cut(s) 384
MalI GATC 3 cut(s) 66, 83, 408
MboI GATC 3 cut(s) 64, 81, 406
MboII GAAGA 6 cut(s) 355, 362, 372, 416, 495, 558
MhlI GDGCHC 2 cut(s) 236, 508
MluCI AATT 2 cut(s) 398, 466
MmeI TCCRAC 1 cut(s) 470
MnlI CCTC 9 cut(s) 105, 192, 213, 301, 346, 346, 349, 468, 507
MseI TTAA 4 cut(s) 192, 225, 470, 512
MslI CAYNNNNRTG 3 cut(s) 243, 295, 540
Mva1269I GAATGC 2 cut(s) 29, 531
MwoI GCNNNNNNNGC 3 cut(s) 15, 208, 338
NdeII GATC 3 cut(s) 64, 81, 406
NlaIII CATG 2 cut(s) 209, 427
NlaIV GGNNCC 3 cut(s) 272, 273, 507
NspI RCATGY 1 cut(s) 427
PagI TCATGA 1 cut(s) 205
PceI AGGCCT 1 cut(s) 202
PctI GAATGC 2 cut(s) 29, 531
PfeI GAWTC 2 cut(s) 124, 549
PpuMI RGGWCCY 1 cut(s) 271
Psp5II RGGWCCY 1 cut(s) 271
PspEI GGTNACC 1 cut(s) 384
PspN4I GGNNCC 3 cut(s) 272, 273, 507
PspPI GGNCC 1 cut(s) 271
PspPPI RGGWCCY 1 cut(s) 271
RsaI GTAC 1 cut(s) 5
RsaNI GTAC 1 cut(s) 4
RseI CAYNNNNRTG 3 cut(s) 243, 295, 540
SaqAI TTAA 4 cut(s) 192, 225, 470, 512
Sau3AI GATC 3 cut(s) 64, 81, 406
Sau96I GGNCC 1 cut(s) 271
SduI GDGCHC 2 cut(s) 236, 508
SetI ASST 7 cut(s) 135, 306, 338, 386, 460, 499, 511
SfaNI GCATC 1 cut(s) 287
SinI GGWCC 1 cut(s) 271
SmiMI CAYNNNNRTG 3 cut(s) 243, 295, 540
SmlI CTYRAG 1 cut(s) 305
SmoI CTYRAG 1 cut(s) 305
Sse9I AATT 2 cut(s) 398, 466
SseBI AGGCCT 1 cut(s) 202
SsiI CCGC 1 cut(s) 147
StuI AGGCCT 1 cut(s) 202
TaaI ACNGT 2 cut(s) 90, 173
TaqI TCGA 1 cut(s) 392
TasI AATT 2 cut(s) 398, 466
TatI WGTACW 1 cut(s) 3
TfiI GAWTC 2 cut(s) 124, 549
Tru1I TTAA 4 cut(s) 192, 225, 470, 512
Tru9I TTAA 4 cut(s) 192, 225, 470, 512
TscAI CASTG 1 cut(s) 178
TspDTI ATGAA 2 cut(s) 279, 524
TspRI CASTG 1 cut(s) 178
VpaK11BI GGWCC 1 cut(s) 271
XapI RAATTY 1 cut(s) 466
XceI RCATGY 1 cut(s) 427
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.