Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8075908.1

Orthogroup ID

OG0002320

Physical Location & Seq

Genomic Coordinates Forward (+)

29 .. 580

Gene Structure 552 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8075908.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 445 bp

atgttgataccgccatggctggagcagttgctgacctcgtcgttcttcaccatctgccgtactcacggcgacgcagccaggagtgaatgcaacatgttctgcttggactgcggtggagatgcattttgcttctactgccgctcctccagacacaaagaccaccaagtgatccagataaggaggtcttcttaccatgatgtggtgagggtttcggagatacaaaaggttctggacattagtggggttcagacctatgtgataaacagtgccagagttctgttcttgaatgagaggcctcaaccaaaagctggaatcaaaggagtcccccacatttgtgaaatctgtagcagaggcctcttggacccatttcgattctgctctctgggttgtaaggtgagcatttctccactctcaaacccccaatttgcttcacattgtgttcttt

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PLATZ

Protein Analysis

148

Amino Acids

16.67

Weight (kDa)

8.53

Isoelectric Point (pI)

56.39

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002320)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G27930 AT2G27930 AT2G27930 AT2G27930 AT2G27930 AT2G27930
fragaria_vesca	FvH4_3g30410 FvH4_3g30410 FvH4_6g17200 FvH4_6g17200
malus_domestica	MD03G1129200.v1.1 MD11G1151300.v1.1 MD12G1103000.v1.1 MD14G1097400.v1.1
prunus_persica	Prupe.6G114500_v2.0.a1 Prupe.6G114500_v2.0.a1 Prupe.7G123100_v2.0.a1
pyrus_communis	pycom11g12330 pycom12g10120 pycom14g09510
rosa_chinensis	RchiOBHm_Chr3g0471281 RchiOBHm_Chr5g0056371
rosa_laevigata	RLG00000024191
rosa_multiflora	Rmu_co8075908.1_g000001 Rmu_sc0000317.1_g000021 Rmu_sc0009082.1_g000006
rosa_roxburghii	Rroxscaffold_1G00023940 Rroxscaffold_6G00410110
rosa_rugosa	Rorug03G0116700 Rorug03G0116800 Rorug05G0299200 Rorug05G0299200
rosa_samantha	Rh3AG166100 Rh3BG191500 Rh3CG181800 Rh3DG184100 Rh5AG370000 Rh5BG381000 Rh5CG404300 Rh5DG394300
rosa_wichuraiana	Rw3G015640 Rw5G034650

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	2 cut(s)	199, 308
AccBSI	CCGCTC	1 cut(s)	141
AciI	CCGC	3 cut(s)	11, 111, 139
AclWI	GGATC	1 cut(s)	163
AdeI	CACNNNGTG	2 cut(s)	166, 437
AfaI	GTAC	1 cut(s)	61
AfiI	CCNNNNNNNGG	2 cut(s)	199, 308
AflIII	ACRYGT	1 cut(s)	93
AgsI	TTSAA	1 cut(s)	286
AjnI	CCWGG	1 cut(s)	77
AleI	CACNNNNGTG	1 cut(s)	333
AluBI	AGCT	1 cut(s)	308
AluI	AGCT	1 cut(s)	308
AlwI	GGATC	1 cut(s)	163
AlwNI	CAGNNNCTG	1 cut(s)	31
AoxI	GGCC	2 cut(s)	293, 352
ApeKI	GCWGC	1 cut(s)	74
AspS9I	GGNCC	1 cut(s)	361
AsuHPI	GGTGA	3 cut(s)	40, 214, 406
AvaII	GGWCC	1 cut(s)	361
BbsI	GAAGAC	1 cut(s)	177
BbvI	GCAGC	1 cut(s)	86
BccI	CCATC	1 cut(s)	59
BceAI	ACGGC	2 cut(s)	42, 82
BciT130I	CCWGG	1 cut(s)	79
BfmI	CTRYAG	1 cut(s)	343
BisI	GCNGC	2 cut(s)	75, 139
BlsI	GCNGC	2 cut(s)	76, 140
Bme1390I	CCNGG	1 cut(s)	79
Bme18I	GGWCC	1 cut(s)	361
BmgT120I	GGNCC	1 cut(s)	361
BmiI	GGNNCC	1 cut(s)	363
BmrFI	CCNGG	1 cut(s)	79
BmsI	GCATC	1 cut(s)	109
BpiI	GAAGAC	1 cut(s)	177
BplI	GAGNNNNNCTC	2 cut(s)	388, 420
BpmI	CTGGAG	2 cut(s)	41, 130
BsaJI	CCNNGG	1 cut(s)	14
BsaXI	ACNNNNNCTCC	2 cut(s)	125, 155
Bsc4I	CCNNNNNNNGG	2 cut(s)	199, 308
BseBI	CCWGG	1 cut(s)	79
BseDI	CCNNGG	1 cut(s)	14
BseLI	CCNNNNNNNGG	2 cut(s)	199, 308
BseRI	GAGGAG	1 cut(s)	133
BseXI	GCAGC	1 cut(s)	86
BshFI	GGCC	2 cut(s)	295, 354
BslFI	GGGAC	1 cut(s)	308
BslI	CCNNNNNNNGG	2 cut(s)	199, 308
BsmFI	GGGAC	1 cut(s)	308
BsmI	GAATGC	1 cut(s)	92
BsnI	GGCC	2 cut(s)	295, 354
Bsp143I	GATC	1 cut(s)	168
Bsp19I	CCATGG	1 cut(s)	14
BspACI	CCGC	3 cut(s)	11, 111, 139
BspANI	GGCC	2 cut(s)	295, 354
BspLI	GGNNCC	1 cut(s)	363
BspPI	GGATC	1 cut(s)	163
BsrBI	CCGCTC	1 cut(s)	141
BssECI	CCNNGG	1 cut(s)	14
BssMI	GATC	1 cut(s)	168
BssT1I	CCWWGG	1 cut(s)	14
Bst2UI	CCWGG	1 cut(s)	79
Bst4CI	ACNGT	1 cut(s)	266
BstDSI	CCRYGG	1 cut(s)	14
BstKTI	GATC	1 cut(s)	171
BstMBI	GATC	1 cut(s)	168
BstMWI	GCNNNNNNNGC	2 cut(s)	108, 135
BstNI	CCWGG	1 cut(s)	79
BstNSI	RCATGY	1 cut(s)	97
BstSCI	CCNGG	1 cut(s)	77
BstSFI	CTRYAG	1 cut(s)	343
BstV1I	GCAGC	1 cut(s)	86
BstV2I	GAAGAC	1 cut(s)	177
BsuRI	GGCC	2 cut(s)	295, 354
BtgI	CCRYGG	1 cut(s)	14
BtsIMutI	CAGTG	1 cut(s)	271
CaiI	CAGNNNCTG	1 cut(s)	31
Cfr13I	GGNCC	1 cut(s)	361
CseI	GACGC	1 cut(s)	80
Csp6I	GTAC	1 cut(s)	60
CviAII	CATG	3 cut(s)	15, 94, 194
CviJI	RGCY	5 cut(s)	19, 77, 295, 308, 354
CviKI_1	RGCY	5 cut(s)	19, 77, 295, 308, 354
CviQI	GTAC	1 cut(s)	60
DpnI	GATC	1 cut(s)	170
DpnII	GATC	1 cut(s)	168
DraIII	CACNNNGTG	2 cut(s)	166, 437
Eco130I	CCWWGG	1 cut(s)	14
Eco147I	AGGCCT	2 cut(s)	295, 354
Eco47I	GGWCC	1 cut(s)	361
EcoRII	CCWGG	1 cut(s)	77
EcoT14I	CCWWGG	1 cut(s)	14
EcoT22I	ATGCAT	1 cut(s)	124
ErhI	CCWWGG	1 cut(s)	14
FaeI	CATG	3 cut(s)	18, 97, 197
FaiI	YATR	4 cut(s)	16, 95, 195, 255
FalI	AAGNNNNNCTT	2 cut(s)	169, 201
FaqI	GGGAC	1 cut(s)	308
FatI	CATG	3 cut(s)	14, 93, 193
Fnu4HI	GCNGC	2 cut(s)	75, 139
Fsp4HI	GCNGC	2 cut(s)	75, 139
GluI	GCNGC	2 cut(s)	75, 139
GsuI	CTGGAG	2 cut(s)	41, 130
HaeIII	GGCC	2 cut(s)	295, 354
HgaI	GACGC	1 cut(s)	80
Hin1II	CATG	3 cut(s)	18, 97, 197
HinfI	GANTC	3 cut(s)	312, 321, 372
HphI	GGTGA	3 cut(s)	40, 214, 406
Hpy188I	TCNGA	2 cut(s)	214, 249
Hpy188III	TCNNGA	4 cut(s)	147, 172, 230, 283
Hpy99I	CGWCG	2 cut(s)	43, 74
HpyCH4III	ACNGT	1 cut(s)	266
HpyCH4V	TGCA	2 cut(s)	90, 122
HpyF10VI	GCNNNNNNNGC	2 cut(s)	108, 135
Hsp92II	CATG	3 cut(s)	18, 97, 197
Kzo9I	GATC	1 cut(s)	168
LmnI	GCTCC	2 cut(s)	22, 146
LpnPI	CCDG	9 cut(s)	5, 64, 91, 160, 185, 215, 283, 294, 368
Lsp1109I	GCAGC	1 cut(s)	86
LweI	GCATC	1 cut(s)	109
MalI	GATC	1 cut(s)	170
MbiI	CCGCTC	1 cut(s)	141
MboI	GATC	1 cut(s)	168
MboII	GAAGA	2 cut(s)	37, 177
MluCI	AATT	1 cut(s)	422
MlyI	GAGTC	1 cut(s)	330
MnlI	CCTC	8 cut(s)	46, 154, 174, 198, 285, 306, 344, 365
Mph1103I	ATGCAT	1 cut(s)	124
MslI	CAYNNNNRTG	1 cut(s)	333
MspR9I	CCNGG	1 cut(s)	79
Mva1269I	GAATGC	1 cut(s)	92
MvaI	CCWGG	1 cut(s)	79
MwoI	GCNNNNNNNGC	2 cut(s)	108, 135
NcoI	CCATGG	1 cut(s)	14
NdeII	GATC	1 cut(s)	168
NlaIII	CATG	3 cut(s)	18, 97, 197
NlaIV	GGNNCC	1 cut(s)	363
NsiI	ATGCAT	1 cut(s)	124
NspI	RCATGY	1 cut(s)	97
OliI	CACNNNNGTG	1 cut(s)	333
PceI	AGGCCT	2 cut(s)	295, 354
PciI	ACATGT	1 cut(s)	93
PctI	GAATGC	1 cut(s)	92
PfeI	GAWTC	2 cut(s)	312, 372
PflFI	GACNNNGTC	1 cut(s)	37
PflMI	CCANNNNNTGG	2 cut(s)	199, 308
PkrI	GCNGC	2 cut(s)	76, 140
PleI	GAGTC	1 cut(s)	329
PpsI	GAGTC	1 cut(s)	329
PscI	ACATGT	1 cut(s)	93
Psp6I	CCWGG	1 cut(s)	77
PspGI	CCWGG	1 cut(s)	77
PspN4I	GGNNCC	1 cut(s)	363
PspPI	GGNCC	1 cut(s)	361
PstNI	CAGNNNCTG	1 cut(s)	31
PsyI	GACNNNGTC	1 cut(s)	37
RsaI	GTAC	1 cut(s)	61
RsaNI	GTAC	1 cut(s)	60
RseI	CAYNNNNRTG	1 cut(s)	333
SatI	GCNGC	2 cut(s)	75, 139
Sau3AI	GATC	1 cut(s)	168
Sau96I	GGNCC	1 cut(s)	361
SchI	GAGTC	1 cut(s)	330
ScrFI	CCNGG	1 cut(s)	79
SetI	ASST	6 cut(s)	38, 185, 228, 254, 310, 396
SfaNI	GCATC	1 cut(s)	109
SfcI	CTRYAG	1 cut(s)	343
SinI	GGWCC	1 cut(s)	361
SmiMI	CAYNNNNRTG	1 cut(s)	333
Sse9I	AATT	1 cut(s)	422
SseBI	AGGCCT	2 cut(s)	295, 354
SsiI	CCGC	3 cut(s)	11, 111, 139
StuI	AGGCCT	2 cut(s)	295, 354
StyD4I	CCNGG	1 cut(s)	77
StyI	CCWWGG	1 cut(s)	14
TaaI	ACNGT	1 cut(s)	266
TaqI	TCGA	1 cut(s)	370
TasI	AATT	1 cut(s)	422
TauI	GCSGC	1 cut(s)	141
TfiI	GAWTC	2 cut(s)	312, 372
TscAI	CASTG	1 cut(s)	271
TseI	GCWGC	1 cut(s)	74
TspRI	CASTG	1 cut(s)	271
Tth111I	GACNNNGTC	1 cut(s)	37
Van91I	CCANNNNNTGG	2 cut(s)	199, 308
VpaK11BI	GGWCC	1 cut(s)	361
XceI	RCATGY	1 cut(s)	97
Zsp2I	ATGCAT	1 cut(s)	124

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.