pycom11g12330

PLATZ transcription factor

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr11
OG0002320
Physical Location & Seq
Reverse (-)
11249708 .. 11250721
1014 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom11g12330.1

Sequence Viewer

Length: 525 bp
ATGGCGCATTCTGCTCTTATTGTAAATCATCAAGACACAAAGATCGACCAAGTAATTCAGATCAGACGGTCGTCGTATCACGATGTTGTGAGGGTGTCTGAGATTCAGAAGGTGTTAGACATCAGCGGAGTTCAGACTTATGTGATAAACAGTGCGAGAGTGTTGTTTCTTAACCAGAGACCTCAGCCTAAAACAGCCGTTAAAGGGGGCTCACATATCTGTGAAATATGTACGAGATGTCTCTGGGATCCTGTTCGTTTTTGTTCATTGGGATGCAAGCTTGAGGGACTAAAGAAGAAGGGGGAAGCCAGCTTTATCTTAAGCGCAAAGAAAGTAGAAGAGGAGGGAAGAAAGGAAGGTAAACAAAGAAGGTTACCATCAGAAGAATTATTAGAAGATCAATTGCGTGAAGGAATGCAACAAGGAATGTACCAAAGCACTCCAACTCCAACTCCACCACCTCATTCAGATGCAAGGAAAAGGAGAAGAAAGGGCATACCGCATAGAGCACCTTTAAGGCCCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
PLATZ

Protein Analysis

175

Amino Acids

19.77

Weight (kDa)

9.8

Isoelectric Point (pI)

61.83

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PLATZ PF04640 22 - 94 5.5e-30 PLATZ transcription factor
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 2 cut(s) 126, 500
AclWI GGATC 2 cut(s) 242, 255
AfaI GTAC 2 cut(s) 232, 431
AfiI CCNNNNNNNGG 1 cut(s) 204
AflII CTTAAG 1 cut(s) 319
AluBI AGCT 2 cut(s) 280, 312
AluI AGCT 2 cut(s) 280, 312
Alw21I GWGCWC 1 cut(s) 511
Alw26I GTCTC 2 cut(s) 172, 245
AlwI GGATC 2 cut(s) 242, 255
AoxI GGCC 1 cut(s) 518
AspLEI GCGC 2 cut(s) 7, 326
AspS9I GGNCC 1 cut(s) 519
BamHI GGATCC 1 cut(s) 247
BanII GRGCYC 1 cut(s) 212
Bbv12I GWGCWC 1 cut(s) 511
BbvCI CCTCAGC 1 cut(s) 183
BccI CCATC 1 cut(s) 385
BceAI ACGGC 1 cut(s) 182
BcoDI GTCTC 2 cut(s) 172, 245
BfrI CTTAAG 1 cut(s) 319
BmgT120I GGNCC 1 cut(s) 519
BmiI GGNNCC 1 cut(s) 249
BmsI GCATC 2 cut(s) 263, 460
BoxI GACNNNNGTC 1 cut(s) 70
Bpu10I CCTNAGC 1 cut(s) 183
BpuEI CTTGAG 1 cut(s) 302
BsaI GGTCTC 1 cut(s) 172
BsaXI ACNNNNNCTCC 4 cut(s) 430, 436, 460, 466
Bsc4I CCNNNNNNNGG 1 cut(s) 204
BseGI GGATG 1 cut(s) 278
BseLI CCNNNNNNNGG 1 cut(s) 204
BseMII CTCAG 2 cut(s) 90, 197
BseRI GAGGAG 1 cut(s) 356
Bsh1285I CGRYCG 1 cut(s) 71
BshFI GGCC 1 cut(s) 520
BsiEI CGRYCG 1 cut(s) 71
BsiHKAI GWGCWC 1 cut(s) 511
BslFI GGGAC 1 cut(s) 300
BslI CCNNNNNNNGG 1 cut(s) 204
BsmAI GTCTC 2 cut(s) 172, 245
BsmFI GGGAC 1 cut(s) 300
BsmI GAATGC 2 cut(s) 7, 420
BsnI GGCC 1 cut(s) 520
Bso31I GGTCTC 1 cut(s) 172
Bsp1286I GDGCHC 2 cut(s) 212, 511
Bsp143I GATC 4 cut(s) 42, 60, 247, 397
BspACI CCGC 2 cut(s) 126, 500
BspANI GGCC 1 cut(s) 520
BspCNI CTCAG 2 cut(s) 91, 196
BspLI GGNNCC 1 cut(s) 249
BspPI GGATC 2 cut(s) 242, 255
BspTI CTTAAG 1 cut(s) 319
BspTNI GGTCTC 1 cut(s) 172
BssMI GATC 4 cut(s) 42, 60, 247, 397
Bst4CI ACNGT 2 cut(s) 69, 152
Bst6I CTCTTC 1 cut(s) 333
BstAFI CTTAAG 1 cut(s) 319
BstC8I GCNNGC 2 cut(s) 278, 310
BstDEI CTNAG 2 cut(s) 99, 183
BstEII GGTNACC 1 cut(s) 372
BstF5I GGATG 1 cut(s) 278
BstHHI GCGC 2 cut(s) 7, 326
BstKTI GATC 4 cut(s) 45, 63, 250, 400
BstMAI GTCTC 2 cut(s) 172, 245
BstMBI GATC 4 cut(s) 42, 60, 247, 397
BstMCI CGRYCG 1 cut(s) 71
BstMWI GCNNNNNNNGC 1 cut(s) 11
BstPAI GACNNNNGTC 1 cut(s) 70
BstPI GGTNACC 1 cut(s) 372
BstX2I RGATCY 1 cut(s) 247
BstYI RGATCY 1 cut(s) 247
BsuRI GGCC 1 cut(s) 520
BtsCI GGATG 1 cut(s) 278
BtsIMutI CAGTG 1 cut(s) 157
Cac8I GCNNGC 2 cut(s) 278, 310
CfoI GCGC 2 cut(s) 7, 326
Cfr13I GGNCC 1 cut(s) 519
Csp6I GTAC 2 cut(s) 231, 430
CviJI RGCY 7 cut(s) 187, 197, 210, 280, 308, 312, 520
CviKI_1 RGCY 7 cut(s) 187, 197, 210, 280, 308, 312, 520
CviQI GTAC 2 cut(s) 231, 430
DdeI CTNAG 2 cut(s) 99, 183
DpnI GATC 4 cut(s) 44, 62, 249, 399
DpnII GATC 4 cut(s) 42, 60, 247, 397
Eam1104I CTCTTC 1 cut(s) 333
EarI CTCTTC 1 cut(s) 333
Eco24I GRGCYC 1 cut(s) 212
Eco31I GGTCTC 1 cut(s) 172
Eco91I GGTNACC 1 cut(s) 372
EcoO109I RGGNCCY 1 cut(s) 519
EcoO65I GGTNACC 1 cut(s) 372
EcoT38I GRGCYC 1 cut(s) 212
FaiI YATR 5 cut(s) 141, 216, 229, 497, 504
FaqI GGGAC 1 cut(s) 300
FokI GGATG 1 cut(s) 285
FriOI GRGCYC 1 cut(s) 212
GlaI GCGC 2 cut(s) 6, 325
HaeIII GGCC 1 cut(s) 520
HhaI GCGC 2 cut(s) 7, 326
Hin6I GCGC 2 cut(s) 5, 324
HinP1I GCGC 2 cut(s) 5, 324
HindIII AAGCTT 1 cut(s) 278
HinfI GANTC 1 cut(s) 103
Hpy166II GTNNAC 1 cut(s) 362
Hpy188I TCNGA 7 cut(s) 60, 65, 100, 108, 135, 382, 469
Hpy188III TCNNGA 2 cut(s) 32, 80
Hpy8I GTNNAC 1 cut(s) 362
Hpy99I CGWCG 1 cut(s) 76
HpyAV CCTTC 5 cut(s) 103, 292, 350, 363, 404
HpyCH4III ACNGT 2 cut(s) 69, 152
HpyCH4V TGCA 3 cut(s) 276, 418, 473
HpyF10VI GCNNNNNNNGC 1 cut(s) 11
HpyF3I CTNAG 2 cut(s) 99, 183
HspAI GCGC 2 cut(s) 5, 324
Kzo9I GATC 4 cut(s) 42, 60, 247, 397
LpnPI CCDG 4 cut(s) 188, 229, 264, 322
LweI GCATC 2 cut(s) 263, 460
MaeIII GTNAC 1 cut(s) 372
MalI GATC 4 cut(s) 44, 62, 249, 399
MboI GATC 4 cut(s) 42, 60, 247, 397
MboII GAAGA 6 cut(s) 307, 350, 360, 395, 407, 498
MfeI CAATTG 1 cut(s) 401
MflI RGATCY 1 cut(s) 247
MhlI GDGCHC 2 cut(s) 212, 511
MluCI AATT 3 cut(s) 54, 386, 401
MmeI TCCRAC 2 cut(s) 467, 473
MnlI CCTC 6 cut(s) 84, 192, 277, 334, 337, 471
MseI TTAA 4 cut(s) 171, 201, 320, 515
MslI CAYNNNNRTG 3 cut(s) 219, 271, 468
MspA1I CMGCKG 1 cut(s) 126
MspCI CTTAAG 1 cut(s) 319
MunI CAATTG 1 cut(s) 401
Mva1269I GAATGC 2 cut(s) 7, 420
MwoI GCNNNNNNNGC 1 cut(s) 11
NdeII GATC 4 cut(s) 42, 60, 247, 397
NlaIV GGNNCC 1 cut(s) 249
PctI GAATGC 2 cut(s) 7, 420
PfeI GAWTC 1 cut(s) 103
PshAI GACNNNNGTC 1 cut(s) 70
PspEI GGTNACC 1 cut(s) 372
PspN4I GGNNCC 1 cut(s) 249
PspPI GGNCC 1 cut(s) 519
PsuI RGATCY 1 cut(s) 247
RsaI GTAC 2 cut(s) 232, 431
RsaNI GTAC 2 cut(s) 231, 430
RseI CAYNNNNRTG 3 cut(s) 219, 271, 468
SaqAI TTAA 4 cut(s) 171, 201, 320, 515
Sau3AI GATC 4 cut(s) 42, 60, 247, 397
Sau96I GGNCC 1 cut(s) 519
SduI GDGCHC 2 cut(s) 212, 511
SetI ASST 8 cut(s) 114, 184, 282, 314, 361, 374, 463, 514
SfaNI GCATC 2 cut(s) 263, 460
SmiMI CAYNNNNRTG 3 cut(s) 219, 271, 468
SmlI CTYRAG 2 cut(s) 281, 319
SmoI CTYRAG 2 cut(s) 281, 319
Sse9I AATT 3 cut(s) 54, 386, 401
SsiI CCGC 2 cut(s) 126, 500
TaaI ACNGT 2 cut(s) 69, 152
TaqI TCGA 1 cut(s) 45
TasI AATT 3 cut(s) 54, 386, 401
TfiI GAWTC 1 cut(s) 103
Tru1I TTAA 4 cut(s) 171, 201, 320, 515
Tru9I TTAA 4 cut(s) 171, 201, 320, 515
TscAI CASTG 1 cut(s) 157
TspDTI ATGAA 1 cut(s) 255
TspRI CASTG 1 cut(s) 157
Vha464I CTTAAG 1 cut(s) 319
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.