Rh5BG381000

PLATZ transcription factor

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5B
OG0002320
Physical Location & Seq
Forward (+)
60432558 .. 60434962
2405 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh5BG381000.1

Sequence Viewer

Length: 684 bp
ATGTTGGTGCCTTCATGGCTCGAGTCATTGTTATCCGCAGCCTTCTTCTCCATCTGCCCAGCACACAGAGATGCCCCGAGAAGCGAATGCAACATGTACTGCCTGGATTGCCACAACGGGGCGTTTTGCTTTTACTGCAGATCATCAAGGCACAAAGATCACCAAGTAATTCAGATCAGACGGTCGTCATATCACGACGTTGTTAGGGTGAATGAAATTCAGAAGGTTTTGGATATCACTGGAGTTCAGACGTATGTGATAAACAGTGCGAGAGTGCTGTTCTTGAATGAGAGGCCTCAGCCCAAAACTGCTGTCAAAGGGAGCTCACATATCTGTGAAATCTGTGGGAGGAGTCTCTTGGACCCTTTTCGGTTTTGTTCATTGGGATGCAAGCTTGTAGGACTAAAGAAGAATGGGGATGCGAGCTTTATCCTCAGCGCGAAGAATGGGGATGCGAGCTTTATCTTCAAGACTGGTGAAGAGAATGAGGAGGGAAGAAGGGAAGGGATAGCAATAAGGTTGCCATCAAAAGAAGGAGATCATCAAGAGCAATTTCCTAGTGAAGCAACAATGCAACATCCACAAGAAGAACAAGACATGTACCAAAGCACTCCTCCTCCACCCCAATATTCAAGATCAAGAAGAAGAAAGGGCATTCCTTATAGGGCACCTTTAGGGTCCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
PLATZ

Protein Analysis

227

Amino Acids

25.69

Weight (kDa)

8.68

Isoelectric Point (pI)

69.96

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PLATZ PF04640 60 - 132 4.1e-31 PLATZ transcription factor
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 2 cut(s) 7, 667
AccII CGCG 1 cut(s) 440
AciI CCGC 1 cut(s) 36
AcsI RAATTY 1 cut(s) 216
AfaI GTAC 2 cut(s) 98, 602
AfiI CCNNNNNNNGG 1 cut(s) 118
AflIII ACRYGT 2 cut(s) 93, 597
AgsI TTSAA 3 cut(s) 286, 469, 633
AjnI CCWGG 1 cut(s) 102
AluBI AGCT 4 cut(s) 324, 394, 426, 459
AluI AGCT 4 cut(s) 324, 394, 426, 459
Alw21I GWGCWC 1 cut(s) 326
Alw26I GTCTC 1 cut(s) 359
Ama87I CYCGRG 2 cut(s) 20, 76
AoxI GGCC 1 cut(s) 293
ApeKI GCWGC 1 cut(s) 38
ApoI RAATTY 1 cut(s) 216
ArsI GACNNNNNNTTYG 2 cut(s) 297, 329
AspLEI GCGC 1 cut(s) 440
AspS9I GGNCC 2 cut(s) 361, 678
AsuHPI GGTGA 3 cut(s) 152, 220, 488
AvaI CYCGRG 2 cut(s) 20, 76
AvaII GGWCC 2 cut(s) 361, 678
BaeGI GKGCMC 1 cut(s) 670
BanI GGYRCC 2 cut(s) 7, 667
BanII GRGCYC 1 cut(s) 326
Bbv12I GWGCWC 1 cut(s) 326
BbvCI CCTCAGC 2 cut(s) 297, 434
BbvI GCAGC 1 cut(s) 50
BccI CCATC 2 cut(s) 59, 532
BciT130I CCWGG 1 cut(s) 104
BcoDI GTCTC 1 cut(s) 359
BfaI CTAG 1 cut(s) 558
BfmI CTRYAG 1 cut(s) 136
BglI GCCNNNNNGGC 1 cut(s) 16
BisI GCNGC 1 cut(s) 39
BlsI GCNGC 1 cut(s) 40
Bme1390I CCNGG 1 cut(s) 104
Bme18I GGWCC 2 cut(s) 361, 678
BmeT110I CYCGRG 2 cut(s) 20, 76
BmgT120I GGNCC 2 cut(s) 361, 678
BmiI GGNNCC 4 cut(s) 9, 363, 669, 679
BmrFI CCNGG 1 cut(s) 104
BmsI GCATC 4 cut(s) 61, 377, 409, 442
BoxI GACNNNNGTC 1 cut(s) 184
BpmI CTGGAG 1 cut(s) 261
Bpu10I CCTNAGC 2 cut(s) 297, 434
BsaXI ACNNNNNCTCC 2 cut(s) 601, 631
Bsc4I CCNNNNNNNGG 1 cut(s) 118
Bse1I ACTGG 2 cut(s) 244, 478
BseBI CCWGG 1 cut(s) 104
BseGI GGATG 4 cut(s) 392, 424, 457, 577
BseLI CCNNNNNNNGG 1 cut(s) 118
BseMII CTCAG 2 cut(s) 311, 448
BseNI ACTGG 2 cut(s) 244, 478
BseRI GAGGAG 4 cut(s) 364, 503, 603, 606
BseSI GKGCMC 1 cut(s) 670
BseXI GCAGC 1 cut(s) 50
BseYI CCCAGC 1 cut(s) 58
Bsh1236I CGCG 1 cut(s) 440
Bsh1285I CGRYCG 1 cut(s) 185
BshFI GGCC 1 cut(s) 295
BshNI GGYRCC 2 cut(s) 7, 667
BsiEI CGRYCG 1 cut(s) 185
BsiHKAI GWGCWC 1 cut(s) 326
BsiHKCI CYCGRG 2 cut(s) 20, 76
BslI CCNNNNNNNGG 1 cut(s) 118
BsmAI GTCTC 1 cut(s) 359
BsmI GAATGC 2 cut(s) 92, 654
BsnI GGCC 1 cut(s) 295
BsoBI CYCGRG 2 cut(s) 20, 76
Bsp1286I GDGCHC 2 cut(s) 326, 670
Bsp143I GATC 5 cut(s) 140, 157, 174, 538, 635
BspACI CCGC 1 cut(s) 36
BspANI GGCC 1 cut(s) 295
BspCNI CTCAG 2 cut(s) 310, 447
BspFNI CGCG 1 cut(s) 440
BspLI GGNNCC 4 cut(s) 9, 363, 669, 679
BspMAI CTGCAG 1 cut(s) 140
BspT107I GGYRCC 2 cut(s) 7, 667
BsrI ACTGG 2 cut(s) 244, 478
BssMI GATC 5 cut(s) 140, 157, 174, 538, 635
Bst2UI CCWGG 1 cut(s) 104
Bst4CI ACNGT 2 cut(s) 183, 266
Bst6I CTCTTC 1 cut(s) 474
BstC8I GCNNGC 3 cut(s) 392, 424, 457
BstDEI CTNAG 2 cut(s) 297, 434
BstF5I GGATG 4 cut(s) 392, 424, 457, 577
BstFNI CGCG 1 cut(s) 440
BstHHI GCGC 1 cut(s) 440
BstKTI GATC 5 cut(s) 143, 160, 177, 541, 638
BstMAI GTCTC 1 cut(s) 359
BstMBI GATC 5 cut(s) 140, 157, 174, 538, 635
BstMCI CGRYCG 1 cut(s) 185
BstMWI GCNNNNNNNGC 3 cut(s) 16, 108, 135
BstNI CCWGG 1 cut(s) 104
BstNSI RCATGY 2 cut(s) 97, 601
BstPAI GACNNNNGTC 1 cut(s) 184
BstSCI CCNGG 1 cut(s) 102
BstSFI CTRYAG 1 cut(s) 136
BstSLI GKGCMC 1 cut(s) 670
BstUI CGCG 1 cut(s) 440
BstV1I GCAGC 1 cut(s) 50
BsuRI GGCC 1 cut(s) 295
BtsCI GGATG 4 cut(s) 392, 424, 457, 577
BtsIMutI CAGTG 2 cut(s) 237, 271
Cac8I GCNNGC 3 cut(s) 392, 424, 457
CfoI GCGC 1 cut(s) 440
Cfr13I GGNCC 2 cut(s) 361, 678
Csp6I GTAC 2 cut(s) 97, 601
CviAII CATG 3 cut(s) 15, 94, 598
CviJI RGCY 8 cut(s) 19, 41, 295, 301, 324, 394, 426, 459
CviKI_1 RGCY 8 cut(s) 19, 41, 295, 301, 324, 394, 426, 459
CviQI GTAC 2 cut(s) 97, 601
DdeI CTNAG 2 cut(s) 297, 434
DpnI GATC 5 cut(s) 142, 159, 176, 540, 637
DpnII GATC 5 cut(s) 140, 157, 174, 538, 635
Eam1104I CTCTTC 1 cut(s) 474
EarI CTCTTC 1 cut(s) 474
Ecl136II GAGCTC 1 cut(s) 324
Eco147I AGGCCT 1 cut(s) 295
Eco24I GRGCYC 1 cut(s) 326
Eco32I GATATC 1 cut(s) 235
Eco47I GGWCC 2 cut(s) 361, 678
Eco53kI GAGCTC 1 cut(s) 324
Eco88I CYCGRG 2 cut(s) 20, 76
EcoICRI GAGCTC 1 cut(s) 324
EcoO109I RGGNCCY 1 cut(s) 678
EcoRII CCWGG 1 cut(s) 102
EcoRV GATATC 1 cut(s) 235
EcoT38I GRGCYC 1 cut(s) 326
FaeI CATG 3 cut(s) 18, 97, 601
FaiI YATR 7 cut(s) 16, 95, 190, 255, 330, 599, 663
FatI CATG 3 cut(s) 14, 93, 597
Fnu4HI GCNGC 1 cut(s) 39
FokI GGATG 4 cut(s) 399, 431, 464, 564
FriOI GRGCYC 1 cut(s) 326
Fsp4HI GCNGC 1 cut(s) 39
FspBI CTAG 1 cut(s) 558
GlaI GCGC 1 cut(s) 439
GluI GCNGC 1 cut(s) 39
GsaI CCCAGC 1 cut(s) 62
GsuI CTGGAG 1 cut(s) 261
HaeIII GGCC 1 cut(s) 295
HhaI GCGC 1 cut(s) 440
Hin1II CATG 3 cut(s) 18, 97, 601
Hin6I GCGC 1 cut(s) 438
HinP1I GCGC 1 cut(s) 438
HindIII AAGCTT 1 cut(s) 392
HinfI GANTC 2 cut(s) 23, 352
HphI GGTGA 3 cut(s) 152, 220, 488
Hpy188I TCNGA 4 cut(s) 174, 179, 222, 249
Hpy188III TCNNGA 6 cut(s) 194, 283, 469, 545, 633, 639
Hpy99I CGWCG 1 cut(s) 200
HpyAV CCTTC 6 cut(s) 21, 52, 217, 492, 497, 527
HpyCH4III ACNGT 2 cut(s) 183, 266
HpyCH4IV ACGT 2 cut(s) 198, 251
HpyCH4V TGCA 4 cut(s) 90, 138, 390, 574
HpyF10VI GCNNNNNNNGC 3 cut(s) 16, 108, 135
HpyF3I CTNAG 2 cut(s) 297, 434
HpySE526I ACGT 2 cut(s) 198, 251
Hsp92II CATG 3 cut(s) 18, 97, 601
HspAI GCGC 1 cut(s) 438
Kzo9I GATC 5 cut(s) 140, 157, 174, 538, 635
LmnI GCTCC 1 cut(s) 321
LpnPI CCDG 5 cut(s) 72, 89, 116, 225, 459
Lsp1109I GCAGC 1 cut(s) 50
LweI GCATC 4 cut(s) 61, 377, 409, 442
MaeI CTAG 1 cut(s) 558
MaeII ACGT 2 cut(s) 198, 251
MalI GATC 5 cut(s) 142, 159, 176, 540, 637
MboI GATC 5 cut(s) 140, 157, 174, 538, 635
MboII GAAGA 9 cut(s) 37, 421, 454, 457, 491, 507, 599, 654, 657
MhlI GDGCHC 2 cut(s) 326, 670
MluCI AATT 3 cut(s) 168, 216, 551
MlyI GAGTC 2 cut(s) 32, 361
MnlI CCTC 8 cut(s) 285, 306, 342, 443, 481, 484, 624, 627
MslI CAYNNNNRTG 3 cut(s) 69, 333, 385
MspR9I CCNGG 1 cut(s) 104
Mva1269I GAATGC 2 cut(s) 92, 654
MvaI CCWGG 1 cut(s) 104
MvnI CGCG 1 cut(s) 440
MwoI GCNNNNNNNGC 3 cut(s) 16, 108, 135
NdeII GATC 5 cut(s) 140, 157, 174, 538, 635
NlaIII CATG 3 cut(s) 18, 97, 601
NlaIV GGNNCC 4 cut(s) 9, 363, 669, 679
NspI RCATGY 2 cut(s) 97, 601
PaeR7I CTCGAG 1 cut(s) 20
PceI AGGCCT 1 cut(s) 295
PciI ACATGT 2 cut(s) 93, 597
PctI GAATGC 2 cut(s) 92, 654
PkrI GCNGC 1 cut(s) 40
PleI GAGTC 2 cut(s) 31, 360
PpsI GAGTC 2 cut(s) 31, 360
PpuMI RGGWCCY 1 cut(s) 678
PscI ACATGT 2 cut(s) 93, 597
PshAI GACNNNNGTC 1 cut(s) 184
Psp124BI GAGCTC 1 cut(s) 326
Psp5II RGGWCCY 1 cut(s) 678
Psp6I CCWGG 1 cut(s) 102
PspFI CCCAGC 1 cut(s) 58
PspGI CCWGG 1 cut(s) 102
PspN4I GGNNCC 4 cut(s) 9, 363, 669, 679
PspPI GGNCC 2 cut(s) 361, 678
PspPPI RGGWCCY 1 cut(s) 678
PspXI VCTCGAGB 1 cut(s) 20
PstI CTGCAG 1 cut(s) 140
RsaI GTAC 2 cut(s) 98, 602
RsaNI GTAC 2 cut(s) 97, 601
RseI CAYNNNNRTG 3 cut(s) 69, 333, 385
SacI GAGCTC 1 cut(s) 326
SatI GCNGC 1 cut(s) 39
Sau3AI GATC 5 cut(s) 140, 157, 174, 538, 635
Sau96I GGNCC 2 cut(s) 361, 678
SchI GAGTC 2 cut(s) 32, 361
ScrFI CCNGG 1 cut(s) 104
SduI GDGCHC 2 cut(s) 326, 670
SetI ASST 9 cut(s) 201, 228, 254, 326, 396, 428, 461, 521, 673
SfaNI GCATC 4 cut(s) 61, 377, 409, 442
SfcI CTRYAG 1 cut(s) 136
Sfr274I CTCGAG 1 cut(s) 20
SinI GGWCC 2 cut(s) 361, 678
SlaI CTCGAG 1 cut(s) 20
SmiMI CAYNNNNRTG 3 cut(s) 69, 333, 385
SmlI CTYRAG 1 cut(s) 20
SmoI CTYRAG 1 cut(s) 20
Sse9I AATT 3 cut(s) 168, 216, 551
SseBI AGGCCT 1 cut(s) 295
SsiI CCGC 1 cut(s) 36
SspI AATATT 1 cut(s) 629
SspMI CTAG 1 cut(s) 558
SstI GAGCTC 1 cut(s) 326
StuI AGGCCT 1 cut(s) 295
StyD4I CCNGG 1 cut(s) 102
TaaI ACNGT 2 cut(s) 183, 266
TaiI ACGT 2 cut(s) 201, 254
TaqI TCGA 1 cut(s) 21
TasI AATT 3 cut(s) 168, 216, 551
TatI WGTACW 1 cut(s) 96
TscAI CASTG 2 cut(s) 244, 271
TseI GCWGC 1 cut(s) 38
TspDTI ATGAA 2 cut(s) 228, 369
TspRI CASTG 2 cut(s) 244, 271
VpaK11BI GGWCC 2 cut(s) 361, 678
XapI RAATTY 1 cut(s) 216
XceI RCATGY 2 cut(s) 97, 601
XhoI CTCGAG 1 cut(s) 20
XspI CTAG 1 cut(s) 558
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.