Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr12

Orthogroup ID

OG0002320

Physical Location & Seq

Genomic Coordinates Forward (+)

12060023 .. 12061646

Gene Structure 1624 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom12g10120.5

Sequence Viewer

CDS Protein Promoter (2k)

Length: 669 bp

ATGAGCCTTGTCCCCTCGTCTAAGTCCAGTCGAAGCAAAGGCATCACATTCTTCCAGATACTCGTTTGCACACAAATGGACAGGACAATGCTGGTGCCTCCATGGCTAGAACAATTGCTCACCACATCATTCTTCAGAGTCTGCCGTACACATGGAGACGCCACCAGAAGTGAGTCCAACATGTTCTGCTTAGATTGCAGTGGAGATGCTTTCTGCTTTTATTGCCGGTCCTCCAGACACAAAGATCACCAAGTGATTCAGATAAGGAGATCTTCATACCATGATGTGGTGAGGGTTTCAGAAGTTCAGAAGGTATTGGACATAACCGGAGTTCAGACATATGTCATAAACAGCGCCAGAGTTATGTTTCTGAATGAGAGGCCTCAGCCTAAGGCTGGGAGTAAAGGAGCTTCCCACATTTGTGAAACCTGTGGCAGAAGCCTCTTGGACCCTGTTCGTTTCTGCTCACTCGGCTGTAAGCTTGCGGGAATAAATAGAAATGGGGATGCAAACTTTACCTTAGAGGCAAAGAATGAGGAGGCAATGGGGGGAAGAGAAGAGTTGCGTGAAGGCTCACAACAAGACATATGCCCGCCCACGCCGCCTCCACCTCCTTCCACAACAAGAAGAAGAAAAGGCATTCCTCATAGGGCACCCTTTGGCTCCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PLATZ

Protein Analysis

223

Amino Acids

24.8

Weight (kDa)

9.16

Isoelectric Point (pI)

63.84

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002320)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G27930 AT2G27930 AT2G27930 AT2G27930 AT2G27930 AT2G27930
fragaria_vesca	FvH4_3g30410 FvH4_3g30410 FvH4_6g17200 FvH4_6g17200
malus_domestica	MD03G1129200.v1.1 MD11G1151300.v1.1 MD12G1103000.v1.1 MD14G1097400.v1.1
prunus_persica	Prupe.6G114500_v2.0.a1 Prupe.6G114500_v2.0.a1 Prupe.7G123100_v2.0.a1
pyrus_communis	pycom11g12330 pycom12g10120 pycom14g09510
rosa_chinensis	RchiOBHm_Chr3g0471281 RchiOBHm_Chr5g0056371
rosa_laevigata	RLG00000024191
rosa_multiflora	Rmu_co8075908.1_g000001 Rmu_sc0000317.1_g000021 Rmu_sc0009082.1_g000006
rosa_roxburghii	Rroxscaffold_1G00023940 Rroxscaffold_6G00410110
rosa_rugosa	Rorug03G0116700 Rorug03G0116800 Rorug05G0299200 Rorug05G0299200
rosa_samantha	Rh3AG166100 Rh3BG191500 Rh3CG181800 Rh3DG184100 Rh5AG370000 Rh5BG381000 Rh5CG404300 Rh5DG394300
rosa_wichuraiana	Rw3G015640 Rw5G034650

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	2 cut(s)	94, 652
AccB7I	CCANNNNNTGG	1 cut(s)	286
AciI	CCGC	3 cut(s)	485, 593, 602
AcuI	CTGAAG	1 cut(s)	118
AcyI	GRCGYC	1 cut(s)	159
AdeI	CACNNNGTG	1 cut(s)	253
AfaI	GTAC	1 cut(s)	148
AfiI	CCNNNNNNNGG	2 cut(s)	286, 395
AflIII	ACRYGT	1 cut(s)	180
AleI	CACNNNNGTG	1 cut(s)	420
AluBI	AGCT	2 cut(s)	410, 481
AluI	AGCT	2 cut(s)	410, 481
Alw26I	GTCTC	1 cut(s)	150
AlwNI	CAGNNNCTG	1 cut(s)	141
AoxI	GGCC	1 cut(s)	380
AspLEI	GCGC	1 cut(s)	356
AspS9I	GGNCC	2 cut(s)	228, 448
AsuHPI	GGTGA	3 cut(s)	112, 239, 301
AvaII	GGWCC	2 cut(s)	228, 448
AxyI	CCTNAGG	1 cut(s)	390
BaeGI	GKGCMC	1 cut(s)	655
BanI	GGYRCC	2 cut(s)	94, 652
BarI	GAAGNNNNNNTAC	2 cut(s)	394, 426
BbvCI	CCTCAGC	1 cut(s)	384
BceAI	ACGGC	1 cut(s)	129
BcoDI	GTCTC	1 cut(s)	150
BfaI	CTAG	1 cut(s)	107
BfoI	RGCGCY	1 cut(s)	357
BglI	GCCNNNNNGGC	1 cut(s)	103
BglII	AGATCT	1 cut(s)	269
BisI	GCNGC	1 cut(s)	602
BlsI	GCNGC	1 cut(s)	603
Bme18I	GGWCC	2 cut(s)	228, 448
BmgT120I	GGNCC	2 cut(s)	228, 448
BmiI	GGNNCC	4 cut(s)	96, 450, 654, 664
BmsI	GCATC	3 cut(s)	51, 196, 496
BoxI	GACNNNNGTC	1 cut(s)	341
BpmI	CTGGAG	1 cut(s)	217
Bpu10I	CCTNAGC	1 cut(s)	384
BsaHI	GRCGYC	1 cut(s)	159
BsaJI	CCNNGG	1 cut(s)	101
BsaWI	WCCGGW	1 cut(s)	326
BsaXI	ACNNNNNCTCC	2 cut(s)	589, 619
Bsc4I	CCNNNNNNNGG	2 cut(s)	286, 395
Bse118I	RCCGGY	1 cut(s)	225
Bse1I	ACTGG	1 cut(s)	27
Bse21I	CCTNAGG	1 cut(s)	390
Bse3DI	GCAATG	1 cut(s)	549
BseDI	CCNNGG	1 cut(s)	101
BseGI	GGATG	1 cut(s)	511
BseLI	CCNNNNNNNGG	2 cut(s)	286, 395
BseMI	GCAATG	1 cut(s)	549
BseMII	CTCAG	1 cut(s)	398
BseNI	ACTGG	1 cut(s)	27
BseRI	GAGGAG	1 cut(s)	551
BseSI	GKGCMC	1 cut(s)	655
BseYI	CCCAGC	1 cut(s)	395
BshFI	GGCC	1 cut(s)	382
BshNI	GGYRCC	2 cut(s)	94, 652
BsiSI	CCGG	2 cut(s)	226, 327
BslI	CCNNNNNNNGG	2 cut(s)	286, 395
BsmAI	GTCTC	1 cut(s)	150
BsmBI	CGTCTC	1 cut(s)	150
BsmI	GAATGC	1 cut(s)	639
BsnI	GGCC	1 cut(s)	382
Bsp1286I	GDGCHC	1 cut(s)	655
Bsp143I	GATC	2 cut(s)	244, 269
Bsp19I	CCATGG	1 cut(s)	101
BspACI	CCGC	3 cut(s)	485, 593, 602
BspANI	GGCC	1 cut(s)	382
BspCNI	CTCAG	1 cut(s)	397
BspLI	GGNNCC	4 cut(s)	96, 450, 654, 664
BspT107I	GGYRCC	2 cut(s)	94, 652
BsrDI	GCAATG	1 cut(s)	549
BsrFI	RCCGGY	1 cut(s)	225
BsrI	ACTGG	1 cut(s)	27
BssAI	RCCGGY	1 cut(s)	225
BssECI	CCNNGG	1 cut(s)	101
BssMI	GATC	2 cut(s)	244, 269
BssNI	GRCGYC	1 cut(s)	159
BssT1I	CCWWGG	1 cut(s)	101
Bst6I	CTCTTC	2 cut(s)	547, 552
BstACI	GRCGYC	1 cut(s)	159
BstC8I	GCNNGC	2 cut(s)	483, 593
BstDEI	CTNAG	5 cut(s)	21, 190, 384, 390, 520
BstDSI	CCRYGG	1 cut(s)	101
BstF5I	GGATG	1 cut(s)	511
BstH2I	RGCGCY	1 cut(s)	357
BstHHI	GCGC	1 cut(s)	356
BstKTI	GATC	2 cut(s)	247, 272
BstMAI	GTCTC	1 cut(s)	150
BstMBI	GATC	2 cut(s)	244, 269
BstMWI	GCNNNNNNNGC	5 cut(s)	103, 195, 222, 471, 601
BstNSI	RCATGY	1 cut(s)	184
BstPAI	GACNNNNGTC	1 cut(s)	341
BstSLI	GKGCMC	1 cut(s)	655
BstX2I	RGATCY	1 cut(s)	269
BstYI	RGATCY	1 cut(s)	269
Bsu36I	CCTNAGG	1 cut(s)	390
BsuRI	GGCC	1 cut(s)	382
BtgI	CCRYGG	1 cut(s)	101
BtsCI	GGATG	1 cut(s)	511
BtsI	GCAGTG	1 cut(s)	205
BtsIMutI	CAGTG	1 cut(s)	205
Cac8I	GCNNGC	2 cut(s)	483, 593
CaiI	CAGNNNCTG	1 cut(s)	141
CfoI	GCGC	1 cut(s)	356
Cfr10I	RCCGGY	1 cut(s)	225
Cfr13I	GGNCC	2 cut(s)	228, 448
CseI	GACGC	1 cut(s)	167
Csp6I	GTAC	1 cut(s)	147
CviAII	CATG	4 cut(s)	102, 152, 181, 281
CviQI	GTAC	1 cut(s)	147
DdeI	CTNAG	5 cut(s)	21, 190, 384, 390, 520
DpnI	GATC	2 cut(s)	246, 271
DpnII	GATC	2 cut(s)	244, 269
DraIII	CACNNNGTG	1 cut(s)	253
Eam1104I	CTCTTC	2 cut(s)	547, 552
EarI	CTCTTC	2 cut(s)	547, 552
Eco130I	CCWWGG	1 cut(s)	101
Eco147I	AGGCCT	1 cut(s)	382
Eco47I	GGWCC	2 cut(s)	228, 448
Eco57I	CTGAAG	1 cut(s)	118
Eco81I	CCTNAGG	1 cut(s)	390
EcoT14I	CCWWGG	1 cut(s)	101
ErhI	CCWWGG	1 cut(s)	101
Esp3I	CGTCTC	1 cut(s)	150
FaeI	CATG	4 cut(s)	105, 155, 184, 284
FalI	AAGNNNNNCTT	2 cut(s)	256, 288
FatI	CATG	4 cut(s)	101, 151, 180, 280
FauI	CCCGC	2 cut(s)	478, 600
FauNDI	CATATG	2 cut(s)	340, 587
Fnu4HI	GCNGC	1 cut(s)	602
FokI	GGATG	1 cut(s)	518
Fsp4HI	GCNGC	1 cut(s)	602
FspBI	CTAG	1 cut(s)	107
GlaI	GCGC	1 cut(s)	355
GluI	GCNGC	1 cut(s)	602
GsaI	CCCAGC	1 cut(s)	399
GsuI	CTGGAG	1 cut(s)	217
HaeII	RGCGCY	1 cut(s)	357
HaeIII	GGCC	1 cut(s)	382
HapII	CCGG	2 cut(s)	226, 327
HgaI	GACGC	1 cut(s)	167
HhaI	GCGC	1 cut(s)	356
Hin1I	GRCGYC	1 cut(s)	159
Hin1II	CATG	4 cut(s)	105, 155, 184, 284
Hin6I	GCGC	1 cut(s)	354
HinP1I	GCGC	1 cut(s)	354
HindIII	AAGCTT	1 cut(s)	479
HinfI	GANTC	3 cut(s)	138, 173, 256
HpaII	CCGG	2 cut(s)	226, 327
HphI	GGTGA	3 cut(s)	112, 239, 301
Hpy166II	GTNNAC	1 cut(s)	149
Hpy188I	TCNGA	6 cut(s)	137, 261, 301, 309, 336, 372
Hpy188III	TCNNGA	2 cut(s)	55, 234
Hpy8I	GTNNAC	1 cut(s)	149
HpyAV	CCTTC	3 cut(s)	304, 563, 624
HpyCH4V	TGCA	3 cut(s)	69, 198, 509
HpyF10VI	GCNNNNNNNGC	5 cut(s)	103, 195, 222, 471, 601
HpyF3I	CTNAG	5 cut(s)	21, 190, 384, 390, 520
Hsp92I	GRCGYC	1 cut(s)	159
Hsp92II	CATG	4 cut(s)	105, 155, 184, 284
HspAI	GCGC	1 cut(s)	354
Kzo9I	GATC	2 cut(s)	244, 269
LmnI	GCTCC	2 cut(s)	407, 668
LweI	GCATC	3 cut(s)	51, 196, 496
MaeI	CTAG	1 cut(s)	107
MalI	GATC	2 cut(s)	246, 271
MboI	GATC	2 cut(s)	244, 269
MboII	GAAGA	7 cut(s)	43, 124, 264, 564, 569, 639, 642
MfeI	CAATTG	1 cut(s)	113
MflI	RGATCY	1 cut(s)	269
MhlI	GDGCHC	1 cut(s)	655
MluCI	AATT	1 cut(s)	113
MlyI	GAGTC	2 cut(s)	147, 182
MmeI	TCCRAC	1 cut(s)	201
MslI	CAYNNNNRTG	2 cut(s)	74, 420
MspI	CCGG	2 cut(s)	226, 327
MunI	CAATTG	1 cut(s)	113
Mva1269I	GAATGC	1 cut(s)	639
MwoI	GCNNNNNNNGC	5 cut(s)	103, 195, 222, 471, 601
NcoI	CCATGG	1 cut(s)	101
NdeI	CATATG	2 cut(s)	340, 587
NdeII	GATC	2 cut(s)	244, 269
NlaIII	CATG	4 cut(s)	105, 155, 184, 284
NlaIV	GGNNCC	4 cut(s)	96, 450, 654, 664
NmeAIII	GCCGAG	1 cut(s)	450
NspI	RCATGY	1 cut(s)	184
OliI	CACNNNNGTG	1 cut(s)	420
PceI	AGGCCT	1 cut(s)	382
PciI	ACATGT	1 cut(s)	180
PctI	GAATGC	1 cut(s)	639
PfeI	GAWTC	1 cut(s)	256
PflMI	CCANNNNNTGG	1 cut(s)	286
PkrI	GCNGC	1 cut(s)	603
PleI	GAGTC	2 cut(s)	146, 181
PpsI	GAGTC	2 cut(s)	146, 181
PscI	ACATGT	1 cut(s)	180
PshAI	GACNNNNGTC	1 cut(s)	341
PspFI	CCCAGC	1 cut(s)	395
PspN4I	GGNNCC	4 cut(s)	96, 450, 654, 664
PspPI	GGNCC	2 cut(s)	228, 448
PstNI	CAGNNNCTG	1 cut(s)	141
PsuI	RGATCY	1 cut(s)	269
RsaI	GTAC	1 cut(s)	148
RsaNI	GTAC	1 cut(s)	147
RseI	CAYNNNNRTG	2 cut(s)	74, 420
SatI	GCNGC	1 cut(s)	602
Sau3AI	GATC	2 cut(s)	244, 269
Sau96I	GGNCC	2 cut(s)	228, 448
SchI	GAGTC	2 cut(s)	147, 182
SduI	GDGCHC	1 cut(s)	655
SetI	ASST	6 cut(s)	315, 412, 431, 483, 521, 613
SfaNI	GCATC	3 cut(s)	51, 196, 496
SinI	GGWCC	2 cut(s)	228, 448
SmiMI	CAYNNNNRTG	2 cut(s)	74, 420
Sse9I	AATT	1 cut(s)	113
SseBI	AGGCCT	1 cut(s)	382
SsiI	CCGC	3 cut(s)	485, 593, 602
SspMI	CTAG	1 cut(s)	107
StuI	AGGCCT	1 cut(s)	382
StyI	CCWWGG	1 cut(s)	101
TaqI	TCGA	1 cut(s)	31
TasI	AATT	1 cut(s)	113
TauI	GCSGC	1 cut(s)	604
TfiI	GAWTC	1 cut(s)	256
TscAI	CASTG	1 cut(s)	205
TspDTI	ATGAA	1 cut(s)	264
TspRI	CASTG	1 cut(s)	205
Van91I	CCANNNNNTGG	1 cut(s)	286
VpaK11BI	GGWCC	2 cut(s)	228, 448
XceI	RCATGY	1 cut(s)	184
XspI	CTAG	1 cut(s)	107

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.