Rh3AG166100

PLATZ transcription factor

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr3A
OG0002320
Physical Location & Seq
Reverse (-)
15392917 .. 15394711
1795 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh3AG166100.1

Sequence Viewer

Length: 765 bp
ATGCATTTATGTCTAAGTTTGCAGGTGCCAACAATAGCTGCACACACCAACATTACCACTACCACATTTCTCCAGATAACCCACTTGTGCAGCATTTTGAGCTTTGAGGAGAAAATGGACACAACAATGTTGATACCGCCATGGCTGGAGCAGTTGCTGACCTCGTCGTTCTTCACCATCTGCCGTACTCACGGCGACGCAGCCAGGAGTGAATGCAACATGTTCTGCTTGGACTGCGGTGGAGATGCATTTTGCTTCTACTGCCGCTCCTCCAGACACAAAGACCACCAAGTGATCCAGATAAGGAGGTCTTCTTACCATGATGTGGTGAGGGTTTCGGAGATACAAAAGGTTCTGGACATTAGTGGGGTTCAGACCTATGTGATAAACAGTGCCAGAGTTCTGTTCTTGAATGAGAGGCCTCAACCAAAAGCTGGAATCAAAGGAGTCCCCCACATTTGTGAAATCTGTAGCAGAGGCCTCTTGGACCCATTTCGATTCTGCTCTCTGGGTTGTAAGCTTGTGGGAATAAAGAGGAATGGGGATGCCAACTTTACATTGGAGGCAAGGAATGAAGAGGGAAATGGAAATGGAACAAGAGAAGGAATGATAACATCATCAACAACAAGGAGAGTGACAATGGGGGAGGAAGAGTTGCGTGAAGGCTCACAACAAGACATGTACCCGGACACGCCTCCACCACCTCCTTCTTCAACTACAAGGAGAAGGAAAGGCATTCCTCATAGGGCACCATTTGGGACCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
PLATZ

Protein Analysis

254

Amino Acids

28.47

Weight (kDa)

8.27

Isoelectric Point (pI)

62.16

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PLATZ PF04640 102 - 174 3.6e-30 PLATZ transcription factor
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 13
Acc36I ACCTGC 1 cut(s) 13
AccB1I GGYRCC 2 cut(s) 25, 748
AccB7I CCANNNNNTGG 2 cut(s) 325, 434
AccBSI CCGCTC 1 cut(s) 267
AciI CCGC 3 cut(s) 137, 237, 265
AclWI GGATC 1 cut(s) 289
AdeI CACNNNGTG 1 cut(s) 292
AfaI GTAC 2 cut(s) 187, 683
AfiI CCNNNNNNNGG 2 cut(s) 325, 434
AflIII ACRYGT 2 cut(s) 219, 678
AgsI TTSAA 2 cut(s) 412, 714
AjnI CCWGG 1 cut(s) 203
AleI CACNNNNGTG 1 cut(s) 459
AluBI AGCT 4 cut(s) 38, 102, 434, 520
AluI AGCT 4 cut(s) 38, 102, 434, 520
AlwI GGATC 1 cut(s) 289
AlwNI CAGNNNCTG 1 cut(s) 157
AoxI GGCC 2 cut(s) 419, 478
ApeKI GCWGC 3 cut(s) 38, 90, 200
AspS9I GGNCC 2 cut(s) 487, 759
AsuC2I CCSGG 1 cut(s) 686
AsuHPI GGTGA 2 cut(s) 166, 340
AvaII GGWCC 2 cut(s) 487, 759
BaeGI GKGCMC 1 cut(s) 751
BanI GGYRCC 2 cut(s) 25, 748
BbsI GAAGAC 1 cut(s) 303
BbvI GCAGC 3 cut(s) 25, 102, 212
BccI CCATC 1 cut(s) 185
BceAI ACGGC 2 cut(s) 168, 208
BciT130I CCWGG 1 cut(s) 205
BcnI CCSGG 1 cut(s) 686
BfmI CTRYAG 1 cut(s) 469
BfuAI ACCTGC 1 cut(s) 13
BisI GCNGC 4 cut(s) 39, 91, 201, 265
BlsI GCNGC 4 cut(s) 40, 92, 202, 266
Bme1390I CCNGG 2 cut(s) 205, 686
Bme18I GGWCC 2 cut(s) 487, 759
BmgT120I GGNCC 2 cut(s) 487, 759
BmiI GGNNCC 4 cut(s) 27, 489, 750, 760
BmrFI CCNGG 2 cut(s) 205, 686
BmsI GCATC 2 cut(s) 235, 535
BpiI GAAGAC 1 cut(s) 303
BpmI CTGGAG 3 cut(s) 56, 167, 256
BpuMI CCSGG 1 cut(s) 686
BsaJI CCNNGG 1 cut(s) 140
BsaXI ACNNNNNCTCC 4 cut(s) 251, 281, 638, 668
Bsc4I CCNNNNNNNGG 2 cut(s) 325, 434
BseBI CCWGG 1 cut(s) 205
BseDI CCNNGG 1 cut(s) 140
BseGI GGATG 1 cut(s) 550
BseLI CCNNNNNNNGG 2 cut(s) 325, 434
BseRI GAGGAG 2 cut(s) 122, 259
BseSI GKGCMC 1 cut(s) 751
BseXI GCAGC 3 cut(s) 25, 102, 212
BsgI GTGCAG 2 cut(s) 24, 109
BshFI GGCC 2 cut(s) 421, 480
BshNI GGYRCC 2 cut(s) 25, 748
BsiSI CCGG 1 cut(s) 686
BslFI GGGAC 1 cut(s) 434
BslI CCNNNNNNNGG 2 cut(s) 325, 434
BsmFI GGGAC 1 cut(s) 434
BsmI GAATGC 2 cut(s) 218, 735
BsnI GGCC 2 cut(s) 421, 480
Bsp1286I GDGCHC 1 cut(s) 751
Bsp143I GATC 1 cut(s) 294
Bsp19I CCATGG 1 cut(s) 140
BspACI CCGC 3 cut(s) 137, 237, 265
BspANI GGCC 2 cut(s) 421, 480
BspLI GGNNCC 4 cut(s) 27, 489, 750, 760
BspMI ACCTGC 1 cut(s) 13
BspPI GGATC 1 cut(s) 289
BspT107I GGYRCC 2 cut(s) 25, 748
BsrBI CCGCTC 1 cut(s) 267
BssECI CCNNGG 1 cut(s) 140
BssMI GATC 1 cut(s) 294
BssT1I CCWWGG 1 cut(s) 140
Bst2UI CCWGG 1 cut(s) 205
Bst4CI ACNGT 1 cut(s) 392
Bst6I CTCTTC 2 cut(s) 570, 645
BstDEI CTNAG 1 cut(s) 14
BstDSI CCRYGG 1 cut(s) 140
BstF5I GGATG 1 cut(s) 550
BstKTI GATC 1 cut(s) 297
BstMBI GATC 1 cut(s) 294
BstMWI GCNNNNNNNGC 3 cut(s) 99, 234, 261
BstNI CCWGG 1 cut(s) 205
BstNSI RCATGY 2 cut(s) 223, 682
BstSCI CCNGG 2 cut(s) 203, 684
BstSFI CTRYAG 1 cut(s) 469
BstSLI GKGCMC 1 cut(s) 751
BstV1I GCAGC 3 cut(s) 25, 102, 212
BstV2I GAAGAC 1 cut(s) 303
BsuRI GGCC 2 cut(s) 421, 480
BtgI CCRYGG 1 cut(s) 140
BtsCI GGATG 1 cut(s) 550
BtsIMutI CAGTG 1 cut(s) 397
BveI ACCTGC 1 cut(s) 13
CaiI CAGNNNCTG 1 cut(s) 157
Cfr13I GGNCC 2 cut(s) 487, 759
CseI GACGC 1 cut(s) 206
Csp6I GTAC 2 cut(s) 186, 682
CviAII CATG 4 cut(s) 141, 220, 320, 679
CviJI RGCY 9 cut(s) 38, 102, 145, 203, 421, 434, 480, 520, 666
CviKI_1 RGCY 9 cut(s) 38, 102, 145, 203, 421, 434, 480, 520, 666
CviQI GTAC 2 cut(s) 186, 682
DdeI CTNAG 1 cut(s) 14
DpnI GATC 1 cut(s) 296
DpnII GATC 1 cut(s) 294
DraIII CACNNNGTG 1 cut(s) 292
Eam1104I CTCTTC 2 cut(s) 570, 645
EarI CTCTTC 2 cut(s) 570, 645
Eco130I CCWWGG 1 cut(s) 140
Eco147I AGGCCT 2 cut(s) 421, 480
Eco47I GGWCC 2 cut(s) 487, 759
EcoO109I RGGNCCY 1 cut(s) 759
EcoRII CCWGG 1 cut(s) 203
EcoT14I CCWWGG 1 cut(s) 140
EcoT22I ATGCAT 2 cut(s) 6, 250
ErhI CCWWGG 1 cut(s) 140
FaeI CATG 4 cut(s) 144, 223, 323, 682
FaiI YATR 7 cut(s) 10, 142, 221, 321, 381, 680, 744
FalI AAGNNNNNCTT 2 cut(s) 295, 327
FaqI GGGAC 1 cut(s) 434
FatI CATG 4 cut(s) 140, 219, 319, 678
Fnu4HI GCNGC 4 cut(s) 39, 91, 201, 265
FokI GGATG 1 cut(s) 557
Fsp4HI GCNGC 4 cut(s) 39, 91, 201, 265
GluI GCNGC 4 cut(s) 39, 91, 201, 265
GsuI CTGGAG 3 cut(s) 56, 167, 256
HaeIII GGCC 2 cut(s) 421, 480
HapII CCGG 1 cut(s) 686
HgaI GACGC 1 cut(s) 206
Hin1II CATG 4 cut(s) 144, 223, 323, 682
HindIII AAGCTT 1 cut(s) 518
HinfI GANTC 3 cut(s) 438, 447, 498
HpaII CCGG 1 cut(s) 686
HphI GGTGA 2 cut(s) 166, 340
Hpy188I TCNGA 2 cut(s) 340, 375
Hpy188III TCNNGA 5 cut(s) 73, 273, 298, 356, 409
Hpy99I CGWCG 2 cut(s) 169, 200
HpyAV CCTTC 4 cut(s) 596, 656, 717, 720
HpyCH4III ACNGT 1 cut(s) 392
HpyCH4V TGCA 6 cut(s) 4, 22, 41, 90, 216, 248
HpyF10VI GCNNNNNNNGC 3 cut(s) 99, 234, 261
HpyF3I CTNAG 1 cut(s) 14
Hsp92II CATG 4 cut(s) 144, 223, 323, 682
Kzo9I GATC 1 cut(s) 294
LmnI GCTCC 2 cut(s) 148, 272
Lsp1109I GCAGC 3 cut(s) 25, 102, 212
LweI GCATC 2 cut(s) 235, 535
MaeIII GTNAC 1 cut(s) 634
MalI GATC 1 cut(s) 296
MbiI CCGCTC 1 cut(s) 267
MboI GATC 1 cut(s) 294
MboII GAAGA 5 cut(s) 163, 303, 587, 662, 702
MhlI GDGCHC 1 cut(s) 751
MlyI GAGTC 1 cut(s) 456
Mph1103I ATGCAT 2 cut(s) 6, 250
MslI CAYNNNNRTG 2 cut(s) 125, 459
MspI CCGG 1 cut(s) 686
MspR9I CCNGG 2 cut(s) 205, 686
Mva1269I GAATGC 2 cut(s) 218, 735
MvaI CCWGG 1 cut(s) 205
MwoI GCNNNNNNNGC 3 cut(s) 99, 234, 261
NciI CCSGG 1 cut(s) 686
NcoI CCATGG 1 cut(s) 140
NdeII GATC 1 cut(s) 294
NlaIII CATG 4 cut(s) 144, 223, 323, 682
NlaIV GGNNCC 4 cut(s) 27, 489, 750, 760
NmuCI GTSAC 1 cut(s) 634
NsiI ATGCAT 2 cut(s) 6, 250
NspI RCATGY 2 cut(s) 223, 682
OliI CACNNNNGTG 1 cut(s) 459
PaqCI CACCTGC 1 cut(s) 13
PceI AGGCCT 2 cut(s) 421, 480
PciI ACATGT 2 cut(s) 219, 678
PctI GAATGC 2 cut(s) 218, 735
PfeI GAWTC 2 cut(s) 438, 498
PflFI GACNNNGTC 1 cut(s) 163
PflMI CCANNNNNTGG 2 cut(s) 325, 434
PkrI GCNGC 4 cut(s) 40, 92, 202, 266
PleI GAGTC 1 cut(s) 455
PpsI GAGTC 1 cut(s) 455
PpuMI RGGWCCY 1 cut(s) 759
PscI ACATGT 2 cut(s) 219, 678
Psp5II RGGWCCY 1 cut(s) 759
Psp6I CCWGG 1 cut(s) 203
PspGI CCWGG 1 cut(s) 203
PspN4I GGNNCC 4 cut(s) 27, 489, 750, 760
PspPI GGNCC 2 cut(s) 487, 759
PspPPI RGGWCCY 1 cut(s) 759
PstNI CAGNNNCTG 1 cut(s) 157
PsyI GACNNNGTC 1 cut(s) 163
RsaI GTAC 2 cut(s) 187, 683
RsaNI GTAC 2 cut(s) 186, 682
RseI CAYNNNNRTG 2 cut(s) 125, 459
SatI GCNGC 4 cut(s) 39, 91, 201, 265
Sau3AI GATC 1 cut(s) 294
Sau96I GGNCC 2 cut(s) 487, 759
SchI GAGTC 1 cut(s) 456
ScrFI CCNGG 2 cut(s) 205, 686
SduI GDGCHC 1 cut(s) 751
SfaNI GCATC 2 cut(s) 235, 535
SfcI CTRYAG 1 cut(s) 469
SinI GGWCC 2 cut(s) 487, 759
SmiMI CAYNNNNRTG 2 cut(s) 125, 459
SseBI AGGCCT 2 cut(s) 421, 480
SsiI CCGC 3 cut(s) 137, 237, 265
StuI AGGCCT 2 cut(s) 421, 480
StyD4I CCNGG 2 cut(s) 203, 684
StyI CCWWGG 1 cut(s) 140
TaaI ACNGT 1 cut(s) 392
TaqI TCGA 1 cut(s) 496
TauI GCSGC 1 cut(s) 267
TfiI GAWTC 2 cut(s) 438, 498
TscAI CASTG 1 cut(s) 397
TseFI GTSAC 1 cut(s) 634
TseI GCWGC 3 cut(s) 38, 90, 200
Tsp45I GTSAC 1 cut(s) 634
TspDTI ATGAA 1 cut(s) 588
TspRI CASTG 1 cut(s) 397
Tth111I GACNNNGTC 1 cut(s) 163
Van91I CCANNNNNTGG 2 cut(s) 325, 434
VpaK11BI GGWCC 2 cut(s) 487, 759
XceI RCATGY 2 cut(s) 223, 682
XcmI CCANNNNNNNNNTGG 1 cut(s) 556
Zsp2I ATGCAT 2 cut(s) 6, 250
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.