MD12G1103000.v1.1

PLATZ transcription factor

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr12
OG0002320
Physical Location & Seq
Forward (+)
16126600 .. 16128768
2169 bp
Loading structure...
UTR
Exon/CDS
Intron
MD12G1103000.v1.1.491

Sequence Viewer

Length: 594 bp
ATGGACAGGACAATGCTGGTGCCTCCATGGCTAGAACAATTGCTCACCACATCATTCTTCAGAGTCTGCCGTACACATGGAGACGCCGCCAGAAGTGAGTCCAACATGTTCTGCTTAGATTGCAGTGGAGATGCTTTCTGCTTTTATTGCCGGTCCTCCAGACACAAAGATCACCAAGTGATTCAGATAAGGAGATCTTCATACCATGATGTGGTGAGGGTTTCAGAAGTTCAGAAGGTATTGGACATAACCGGAGTTCAGACATATGTCATAAACAGCGCCAGAGTTATGTTTCTGAATGAGAGGCCTCAGCCTAAGGCTGGGAGTAAAGGAGCTTCCCACATTTGTGAAACCTGTGGCAGAAGCCTCTTGGACCCTGTTCGTTTCTGCTCACTTGGCTGTAAGCTTGCGGGAATAAATAGAAATGGGGATGCAAACTTTACCTTAGAGGCAAAGAATGAGGAGGCAATGGGGGGAAGAGAAGAGTTGCGTGAAGGCTCACAACAAGACATATGCCCGCCCACGCCGCCTCCACCTCCTTCCACAACAAGAAGAAGAAAAGGCATTCCTCATAGGGCACCCTTTGGCTCCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
PLATZ

Protein Analysis

198

Amino Acids

22.04

Weight (kDa)

8.88

Isoelectric Point (pI)

59.31

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PLATZ PF04640 64 - 136 4.7e-31 PLATZ transcription factor
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 2 cut(s) 19, 577
AccB7I CCANNNNNTGG 1 cut(s) 211
AciI CCGC 4 cut(s) 87, 410, 518, 527
AcuI CTGAAG 1 cut(s) 43
AcyI GRCGYC 1 cut(s) 84
AdeI CACNNNGTG 1 cut(s) 178
AfaI GTAC 1 cut(s) 73
AfiI CCNNNNNNNGG 2 cut(s) 211, 320
AflIII ACRYGT 1 cut(s) 105
AleI CACNNNNGTG 1 cut(s) 345
AluBI AGCT 2 cut(s) 335, 406
AluI AGCT 2 cut(s) 335, 406
Alw26I GTCTC 1 cut(s) 75
AlwNI CAGNNNCTG 1 cut(s) 66
AoxI GGCC 1 cut(s) 305
AspLEI GCGC 1 cut(s) 281
AspS9I GGNCC 2 cut(s) 153, 373
AsuHPI GGTGA 3 cut(s) 37, 164, 226
AvaII GGWCC 2 cut(s) 153, 373
AxyI CCTNAGG 1 cut(s) 315
BaeGI GKGCMC 1 cut(s) 580
BanI GGYRCC 2 cut(s) 19, 577
BarI GAAGNNNNNNTAC 2 cut(s) 319, 351
BbvCI CCTCAGC 1 cut(s) 309
BceAI ACGGC 1 cut(s) 54
BcoDI GTCTC 1 cut(s) 75
BfaI CTAG 1 cut(s) 32
BfoI RGCGCY 1 cut(s) 282
BglI GCCNNNNNGGC 1 cut(s) 28
BglII AGATCT 1 cut(s) 194
BisI GCNGC 2 cut(s) 87, 527
BlsI GCNGC 2 cut(s) 88, 528
Bme18I GGWCC 2 cut(s) 153, 373
BmgT120I GGNCC 2 cut(s) 153, 373
BmiI GGNNCC 4 cut(s) 21, 375, 579, 589
BmsI GCATC 2 cut(s) 121, 421
BoxI GACNNNNGTC 1 cut(s) 266
BpmI CTGGAG 1 cut(s) 142
Bpu10I CCTNAGC 1 cut(s) 309
BsaHI GRCGYC 1 cut(s) 84
BsaJI CCNNGG 1 cut(s) 26
BsaWI WCCGGW 1 cut(s) 251
BsaXI ACNNNNNCTCC 2 cut(s) 514, 544
Bsc4I CCNNNNNNNGG 2 cut(s) 211, 320
Bse118I RCCGGY 1 cut(s) 150
Bse21I CCTNAGG 1 cut(s) 315
Bse3DI GCAATG 1 cut(s) 474
BseDI CCNNGG 1 cut(s) 26
BseGI GGATG 1 cut(s) 436
BseLI CCNNNNNNNGG 2 cut(s) 211, 320
BseMI GCAATG 1 cut(s) 474
BseMII CTCAG 1 cut(s) 323
BseRI GAGGAG 1 cut(s) 476
BseSI GKGCMC 1 cut(s) 580
BseYI CCCAGC 1 cut(s) 320
BshFI GGCC 1 cut(s) 307
BshNI GGYRCC 2 cut(s) 19, 577
BsiSI CCGG 2 cut(s) 151, 252
BslI CCNNNNNNNGG 2 cut(s) 211, 320
BsmAI GTCTC 1 cut(s) 75
BsmBI CGTCTC 1 cut(s) 75
BsmI GAATGC 1 cut(s) 564
BsnI GGCC 1 cut(s) 307
Bsp1286I GDGCHC 1 cut(s) 580
Bsp143I GATC 2 cut(s) 169, 194
Bsp19I CCATGG 1 cut(s) 26
BspACI CCGC 4 cut(s) 87, 410, 518, 527
BspANI GGCC 1 cut(s) 307
BspCNI CTCAG 1 cut(s) 322
BspLI GGNNCC 4 cut(s) 21, 375, 579, 589
BspT107I GGYRCC 2 cut(s) 19, 577
BsrDI GCAATG 1 cut(s) 474
BsrFI RCCGGY 1 cut(s) 150
BssAI RCCGGY 1 cut(s) 150
BssECI CCNNGG 1 cut(s) 26
BssMI GATC 2 cut(s) 169, 194
BssNI GRCGYC 1 cut(s) 84
BssT1I CCWWGG 1 cut(s) 26
Bst6I CTCTTC 2 cut(s) 472, 477
BstACI GRCGYC 1 cut(s) 84
BstC8I GCNNGC 2 cut(s) 408, 518
BstDEI CTNAG 4 cut(s) 115, 309, 315, 445
BstDSI CCRYGG 1 cut(s) 26
BstF5I GGATG 1 cut(s) 436
BstH2I RGCGCY 1 cut(s) 282
BstHHI GCGC 1 cut(s) 281
BstKTI GATC 2 cut(s) 172, 197
BstMAI GTCTC 1 cut(s) 75
BstMBI GATC 2 cut(s) 169, 194
BstMWI GCNNNNNNNGC 5 cut(s) 28, 120, 147, 396, 526
BstNSI RCATGY 1 cut(s) 109
BstPAI GACNNNNGTC 1 cut(s) 266
BstSLI GKGCMC 1 cut(s) 580
BstX2I RGATCY 1 cut(s) 194
BstYI RGATCY 1 cut(s) 194
Bsu36I CCTNAGG 1 cut(s) 315
BsuRI GGCC 1 cut(s) 307
BtgI CCRYGG 1 cut(s) 26
BtsCI GGATG 1 cut(s) 436
BtsI GCAGTG 1 cut(s) 130
BtsIMutI CAGTG 1 cut(s) 130
Cac8I GCNNGC 2 cut(s) 408, 518
CaiI CAGNNNCTG 1 cut(s) 66
CfoI GCGC 1 cut(s) 281
Cfr10I RCCGGY 1 cut(s) 150
Cfr13I GGNCC 2 cut(s) 153, 373
CseI GACGC 1 cut(s) 92
Csp6I GTAC 1 cut(s) 72
CviAII CATG 4 cut(s) 27, 77, 106, 206
CviQI GTAC 1 cut(s) 72
DdeI CTNAG 4 cut(s) 115, 309, 315, 445
DpnI GATC 2 cut(s) 171, 196
DpnII GATC 2 cut(s) 169, 194
DraIII CACNNNGTG 1 cut(s) 178
Eam1104I CTCTTC 2 cut(s) 472, 477
EarI CTCTTC 2 cut(s) 472, 477
Eco130I CCWWGG 1 cut(s) 26
Eco147I AGGCCT 1 cut(s) 307
Eco47I GGWCC 2 cut(s) 153, 373
Eco57I CTGAAG 1 cut(s) 43
Eco81I CCTNAGG 1 cut(s) 315
EcoT14I CCWWGG 1 cut(s) 26
ErhI CCWWGG 1 cut(s) 26
Esp3I CGTCTC 1 cut(s) 75
FaeI CATG 4 cut(s) 30, 80, 109, 209
FalI AAGNNNNNCTT 2 cut(s) 181, 213
FatI CATG 4 cut(s) 26, 76, 105, 205
FauI CCCGC 2 cut(s) 403, 525
FauNDI CATATG 2 cut(s) 265, 512
Fnu4HI GCNGC 2 cut(s) 87, 527
FokI GGATG 1 cut(s) 443
Fsp4HI GCNGC 2 cut(s) 87, 527
FspBI CTAG 1 cut(s) 32
GlaI GCGC 1 cut(s) 280
GluI GCNGC 2 cut(s) 87, 527
GsaI CCCAGC 1 cut(s) 324
GsuI CTGGAG 1 cut(s) 142
HaeII RGCGCY 1 cut(s) 282
HaeIII GGCC 1 cut(s) 307
HapII CCGG 2 cut(s) 151, 252
HgaI GACGC 1 cut(s) 92
HhaI GCGC 1 cut(s) 281
Hin1I GRCGYC 1 cut(s) 84
Hin1II CATG 4 cut(s) 30, 80, 109, 209
Hin6I GCGC 1 cut(s) 279
HinP1I GCGC 1 cut(s) 279
HindIII AAGCTT 1 cut(s) 404
HinfI GANTC 3 cut(s) 63, 98, 181
HpaII CCGG 2 cut(s) 151, 252
HphI GGTGA 3 cut(s) 37, 164, 226
Hpy166II GTNNAC 1 cut(s) 74
Hpy188I TCNGA 6 cut(s) 62, 186, 226, 234, 261, 297
Hpy188III TCNNGA 1 cut(s) 159
Hpy8I GTNNAC 1 cut(s) 74
HpyAV CCTTC 3 cut(s) 229, 488, 549
HpyCH4V TGCA 2 cut(s) 123, 434
HpyF10VI GCNNNNNNNGC 5 cut(s) 28, 120, 147, 396, 526
HpyF3I CTNAG 4 cut(s) 115, 309, 315, 445
Hsp92I GRCGYC 1 cut(s) 84
Hsp92II CATG 4 cut(s) 30, 80, 109, 209
HspAI GCGC 1 cut(s) 279
Kzo9I GATC 2 cut(s) 169, 194
LmnI GCTCC 2 cut(s) 332, 593
LpnPI CCDG 9 cut(s) 2, 103, 164, 172, 265, 295, 306, 367, 390
LweI GCATC 2 cut(s) 121, 421
MaeI CTAG 1 cut(s) 32
MalI GATC 2 cut(s) 171, 196
MboI GATC 2 cut(s) 169, 194
MboII GAAGA 6 cut(s) 49, 189, 489, 494, 564, 567
MfeI CAATTG 1 cut(s) 38
MflI RGATCY 1 cut(s) 194
MhlI GDGCHC 1 cut(s) 580
MluCI AATT 1 cut(s) 38
MlyI GAGTC 2 cut(s) 72, 107
MmeI TCCRAC 1 cut(s) 126
MslI CAYNNNNRTG 1 cut(s) 345
MspI CCGG 2 cut(s) 151, 252
MunI CAATTG 1 cut(s) 38
Mva1269I GAATGC 1 cut(s) 564
MwoI GCNNNNNNNGC 5 cut(s) 28, 120, 147, 396, 526
NcoI CCATGG 1 cut(s) 26
NdeI CATATG 2 cut(s) 265, 512
NdeII GATC 2 cut(s) 169, 194
NlaIII CATG 4 cut(s) 30, 80, 109, 209
NlaIV GGNNCC 4 cut(s) 21, 375, 579, 589
NspI RCATGY 1 cut(s) 109
OliI CACNNNNGTG 1 cut(s) 345
PceI AGGCCT 1 cut(s) 307
PciI ACATGT 1 cut(s) 105
PctI GAATGC 1 cut(s) 564
PfeI GAWTC 1 cut(s) 181
PflMI CCANNNNNTGG 1 cut(s) 211
PkrI GCNGC 2 cut(s) 88, 528
PleI GAGTC 2 cut(s) 71, 106
PpsI GAGTC 2 cut(s) 71, 106
PscI ACATGT 1 cut(s) 105
PshAI GACNNNNGTC 1 cut(s) 266
PspFI CCCAGC 1 cut(s) 320
PspN4I GGNNCC 4 cut(s) 21, 375, 579, 589
PspPI GGNCC 2 cut(s) 153, 373
PstNI CAGNNNCTG 1 cut(s) 66
PsuI RGATCY 1 cut(s) 194
RsaI GTAC 1 cut(s) 73
RsaNI GTAC 1 cut(s) 72
RseI CAYNNNNRTG 1 cut(s) 345
SatI GCNGC 2 cut(s) 87, 527
Sau3AI GATC 2 cut(s) 169, 194
Sau96I GGNCC 2 cut(s) 153, 373
SchI GAGTC 2 cut(s) 72, 107
SduI GDGCHC 1 cut(s) 580
SetI ASST 6 cut(s) 240, 337, 356, 408, 446, 538
SfaNI GCATC 2 cut(s) 121, 421
SinI GGWCC 2 cut(s) 153, 373
SmiMI CAYNNNNRTG 1 cut(s) 345
Sse9I AATT 1 cut(s) 38
SseBI AGGCCT 1 cut(s) 307
SsiI CCGC 4 cut(s) 87, 410, 518, 527
SspMI CTAG 1 cut(s) 32
StuI AGGCCT 1 cut(s) 307
StyI CCWWGG 1 cut(s) 26
TasI AATT 1 cut(s) 38
TauI GCSGC 2 cut(s) 89, 529
TfiI GAWTC 1 cut(s) 181
TscAI CASTG 1 cut(s) 130
TspDTI ATGAA 1 cut(s) 189
TspRI CASTG 1 cut(s) 130
Van91I CCANNNNNTGG 1 cut(s) 211
VpaK11BI GGWCC 2 cut(s) 153, 373
XceI RCATGY 1 cut(s) 109
XspI CTAG 1 cut(s) 32
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.