Rh3DG184100

PLATZ transcription factor

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr3D
OG0002320
Physical Location & Seq
Forward (+)
16309923 .. 16312417
2495 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh3DG184100.1

Sequence Viewer

Length: 459 bp
ATGGACACAACAATGTTGATACCGCCATGGCTGGAGCAGTTGCTGACCTCGTCGTTCTTCACCATCTGCCGTACTCACGGCGACGCAGCCAGGAGTGAATGCAACATGTTCTGCTTGGACTGCGGTGGAGATGCATTTTGCTTCTACTGCCGCTCCTCCAGACACAAAGACCACCAAGTGATCCAGATAAGGAGGTCTTCTTACCATGATGTGGTGAGGGTTTCGGAGATACAAAAGGTTCTGGACATTAGTGGGGTTCAGACCTATGTGATAAACAGTGCCAGAGTTATGTTCTTGAATGAGAGGCCTCAACCAAAAGCTGGAATCAAAGGAGTCCCCCACATTTGTGAAATCTGTAGCAGAGGCCTCTTGGACCCATTTCGATTCTGCTCTCTGGGTTGTAAGGTGAGCATTTCTCCACTCTCAAACCCCCAATTTGCTTCACATTGTGTTCTTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
PLATZ

Protein Analysis

152

Amino Acids

17.13

Weight (kDa)

8.32

Isoelectric Point (pI)

54.18

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PLATZ PF04640 64 - 136 5.9e-31 PLATZ transcription factor
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 2 cut(s) 211, 320
AccBSI CCGCTC 1 cut(s) 153
AciI CCGC 3 cut(s) 23, 123, 151
AclWI GGATC 1 cut(s) 175
AdeI CACNNNGTG 2 cut(s) 178, 449
AfaI GTAC 1 cut(s) 73
AfiI CCNNNNNNNGG 2 cut(s) 211, 320
AflIII ACRYGT 1 cut(s) 105
AgsI TTSAA 1 cut(s) 298
AjnI CCWGG 1 cut(s) 89
AleI CACNNNNGTG 1 cut(s) 345
AluBI AGCT 1 cut(s) 320
AluI AGCT 1 cut(s) 320
AlwI GGATC 1 cut(s) 175
AlwNI CAGNNNCTG 1 cut(s) 43
AoxI GGCC 2 cut(s) 305, 364
ApeKI GCWGC 1 cut(s) 86
AspS9I GGNCC 1 cut(s) 373
AsuHPI GGTGA 3 cut(s) 52, 226, 418
AvaII GGWCC 1 cut(s) 373
BbsI GAAGAC 1 cut(s) 189
BbvI GCAGC 1 cut(s) 98
BccI CCATC 1 cut(s) 71
BceAI ACGGC 2 cut(s) 54, 94
BciT130I CCWGG 1 cut(s) 91
BfmI CTRYAG 1 cut(s) 355
BisI GCNGC 2 cut(s) 87, 151
BlsI GCNGC 2 cut(s) 88, 152
Bme1390I CCNGG 1 cut(s) 91
Bme18I GGWCC 1 cut(s) 373
BmgT120I GGNCC 1 cut(s) 373
BmiI GGNNCC 1 cut(s) 375
BmrFI CCNGG 1 cut(s) 91
BmsI GCATC 1 cut(s) 121
BpiI GAAGAC 1 cut(s) 189
BplI GAGNNNNNCTC 2 cut(s) 400, 432
BpmI CTGGAG 2 cut(s) 53, 142
BsaJI CCNNGG 1 cut(s) 26
BsaXI ACNNNNNCTCC 2 cut(s) 137, 167
Bsc4I CCNNNNNNNGG 2 cut(s) 211, 320
BseBI CCWGG 1 cut(s) 91
BseDI CCNNGG 1 cut(s) 26
BseLI CCNNNNNNNGG 2 cut(s) 211, 320
BseRI GAGGAG 1 cut(s) 145
BseXI GCAGC 1 cut(s) 98
BshFI GGCC 2 cut(s) 307, 366
BslFI GGGAC 1 cut(s) 320
BslI CCNNNNNNNGG 2 cut(s) 211, 320
BsmFI GGGAC 1 cut(s) 320
BsmI GAATGC 1 cut(s) 104
BsnI GGCC 2 cut(s) 307, 366
Bsp143I GATC 1 cut(s) 180
Bsp19I CCATGG 1 cut(s) 26
BspACI CCGC 3 cut(s) 23, 123, 151
BspANI GGCC 2 cut(s) 307, 366
BspLI GGNNCC 1 cut(s) 375
BspPI GGATC 1 cut(s) 175
BsrBI CCGCTC 1 cut(s) 153
BssECI CCNNGG 1 cut(s) 26
BssMI GATC 1 cut(s) 180
BssT1I CCWWGG 1 cut(s) 26
Bst2UI CCWGG 1 cut(s) 91
Bst4CI ACNGT 1 cut(s) 278
BstDSI CCRYGG 1 cut(s) 26
BstKTI GATC 1 cut(s) 183
BstMBI GATC 1 cut(s) 180
BstMWI GCNNNNNNNGC 2 cut(s) 120, 147
BstNI CCWGG 1 cut(s) 91
BstNSI RCATGY 1 cut(s) 109
BstSCI CCNGG 1 cut(s) 89
BstSFI CTRYAG 1 cut(s) 355
BstV1I GCAGC 1 cut(s) 98
BstV2I GAAGAC 1 cut(s) 189
BsuRI GGCC 2 cut(s) 307, 366
BtgI CCRYGG 1 cut(s) 26
BtsIMutI CAGTG 1 cut(s) 283
CaiI CAGNNNCTG 1 cut(s) 43
Cfr13I GGNCC 1 cut(s) 373
CseI GACGC 1 cut(s) 92
Csp6I GTAC 1 cut(s) 72
CviAII CATG 3 cut(s) 27, 106, 206
CviJI RGCY 5 cut(s) 31, 89, 307, 320, 366
CviKI_1 RGCY 5 cut(s) 31, 89, 307, 320, 366
CviQI GTAC 1 cut(s) 72
DpnI GATC 1 cut(s) 182
DpnII GATC 1 cut(s) 180
DraIII CACNNNGTG 2 cut(s) 178, 449
Eco130I CCWWGG 1 cut(s) 26
Eco147I AGGCCT 2 cut(s) 307, 366
Eco47I GGWCC 1 cut(s) 373
EcoRII CCWGG 1 cut(s) 89
EcoT14I CCWWGG 1 cut(s) 26
EcoT22I ATGCAT 1 cut(s) 136
ErhI CCWWGG 1 cut(s) 26
FaeI CATG 3 cut(s) 30, 109, 209
FaiI YATR 5 cut(s) 28, 107, 207, 267, 290
FalI AAGNNNNNCTT 2 cut(s) 181, 213
FaqI GGGAC 1 cut(s) 320
FatI CATG 3 cut(s) 26, 105, 205
Fnu4HI GCNGC 2 cut(s) 87, 151
Fsp4HI GCNGC 2 cut(s) 87, 151
GluI GCNGC 2 cut(s) 87, 151
GsuI CTGGAG 2 cut(s) 53, 142
HaeIII GGCC 2 cut(s) 307, 366
HgaI GACGC 1 cut(s) 92
Hin1II CATG 3 cut(s) 30, 109, 209
HinfI GANTC 3 cut(s) 324, 333, 384
HphI GGTGA 3 cut(s) 52, 226, 418
Hpy188I TCNGA 2 cut(s) 226, 261
Hpy188III TCNNGA 4 cut(s) 159, 184, 242, 295
Hpy99I CGWCG 2 cut(s) 55, 86
HpyCH4III ACNGT 1 cut(s) 278
HpyCH4V TGCA 2 cut(s) 102, 134
HpyF10VI GCNNNNNNNGC 2 cut(s) 120, 147
Hsp92II CATG 3 cut(s) 30, 109, 209
Kzo9I GATC 1 cut(s) 180
LmnI GCTCC 2 cut(s) 34, 158
LpnPI CCDG 9 cut(s) 17, 76, 103, 172, 197, 227, 295, 306, 380
Lsp1109I GCAGC 1 cut(s) 98
LweI GCATC 1 cut(s) 121
MalI GATC 1 cut(s) 182
MbiI CCGCTC 1 cut(s) 153
MboI GATC 1 cut(s) 180
MboII GAAGA 2 cut(s) 49, 189
MluCI AATT 1 cut(s) 434
MlyI GAGTC 1 cut(s) 342
MnlI CCTC 8 cut(s) 58, 166, 186, 210, 297, 318, 356, 377
Mph1103I ATGCAT 1 cut(s) 136
MseI TTAA 1 cut(s) 457
MslI CAYNNNNRTG 2 cut(s) 11, 345
MspR9I CCNGG 1 cut(s) 91
Mva1269I GAATGC 1 cut(s) 104
MvaI CCWGG 1 cut(s) 91
MwoI GCNNNNNNNGC 2 cut(s) 120, 147
NcoI CCATGG 1 cut(s) 26
NdeII GATC 1 cut(s) 180
NlaIII CATG 3 cut(s) 30, 109, 209
NlaIV GGNNCC 1 cut(s) 375
NsiI ATGCAT 1 cut(s) 136
NspI RCATGY 1 cut(s) 109
OliI CACNNNNGTG 1 cut(s) 345
PceI AGGCCT 2 cut(s) 307, 366
PciI ACATGT 1 cut(s) 105
PctI GAATGC 1 cut(s) 104
PfeI GAWTC 2 cut(s) 324, 384
PflFI GACNNNGTC 1 cut(s) 49
PflMI CCANNNNNTGG 2 cut(s) 211, 320
PkrI GCNGC 2 cut(s) 88, 152
PleI GAGTC 1 cut(s) 341
PpsI GAGTC 1 cut(s) 341
PscI ACATGT 1 cut(s) 105
Psp6I CCWGG 1 cut(s) 89
PspGI CCWGG 1 cut(s) 89
PspN4I GGNNCC 1 cut(s) 375
PspPI GGNCC 1 cut(s) 373
PstNI CAGNNNCTG 1 cut(s) 43
PsyI GACNNNGTC 1 cut(s) 49
RsaI GTAC 1 cut(s) 73
RsaNI GTAC 1 cut(s) 72
RseI CAYNNNNRTG 2 cut(s) 11, 345
SaqAI TTAA 1 cut(s) 457
SatI GCNGC 2 cut(s) 87, 151
Sau3AI GATC 1 cut(s) 180
Sau96I GGNCC 1 cut(s) 373
SchI GAGTC 1 cut(s) 342
ScrFI CCNGG 1 cut(s) 91
SetI ASST 6 cut(s) 50, 197, 240, 266, 322, 408
SfaNI GCATC 1 cut(s) 121
SfcI CTRYAG 1 cut(s) 355
SinI GGWCC 1 cut(s) 373
SmiMI CAYNNNNRTG 2 cut(s) 11, 345
Sse9I AATT 1 cut(s) 434
SseBI AGGCCT 2 cut(s) 307, 366
SsiI CCGC 3 cut(s) 23, 123, 151
StuI AGGCCT 2 cut(s) 307, 366
StyD4I CCNGG 1 cut(s) 89
StyI CCWWGG 1 cut(s) 26
TaaI ACNGT 1 cut(s) 278
TaqI TCGA 1 cut(s) 382
TasI AATT 1 cut(s) 434
TauI GCSGC 1 cut(s) 153
TfiI GAWTC 2 cut(s) 324, 384
Tru1I TTAA 1 cut(s) 457
Tru9I TTAA 1 cut(s) 457
TscAI CASTG 1 cut(s) 283
TseI GCWGC 1 cut(s) 86
TspRI CASTG 1 cut(s) 283
Tth111I GACNNNGTC 1 cut(s) 49
Van91I CCANNNNNTGG 2 cut(s) 211, 320
VpaK11BI GGWCC 1 cut(s) 373
XceI RCATGY 1 cut(s) 109
Zsp2I ATGCAT 1 cut(s) 136
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.