Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp06

Orthogroup ID

OG0002320

Physical Location & Seq

Genomic Coordinates Reverse (-)

8271852 .. 8273649

Gene Structure 1798 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.6G114500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 639 bp

ATGGCGGCCATGTTGGTTCCTCCATGGCTTGAATCATTGCTATCAACAGCCTTCTTCTCCATCTGCCCATCACACAAAGATGCCCCCAGAAGCGAATGCAACATGTACTGCTTAGATTGCAACAATGGTGCATTTTGCTTTTACTGCAGATCATCAAGACACAAAGATCACCAAGTAATTCAGATCAGGCGGTCGTCGTATCATGATGTTGTTAGGGTGTCTGAGATTCAGAAGGTCCTAGACATCAATGGAGTACAGACTTATGTGATAAACAGTGCGAGAGTACTGTTTTTGAATGAGAGGCCTCAGCCTAAAAATGCCGTTAAGGGGAGCTCACATATCTGTGAAGTATGTGCCAGAAGTCTCTTGGACCCCTTACGTTTTTGTTCATTGGGATGCAAGCTTGTGGGACAAAAGAAGAATGGGGAAGCAAGCTTTATCTTGAGCGCAAAGAAAGAAGAAGAGGAGGGAAGAAGGGAAGGAATAGAAATAAGATTGCCATCAAAAGAGTTAGAAGATCAATTGCCTCAAGGAATGCAACAACACATGTACCAAAACACTTCAACTCCACCTCATCATTCAAATTCAAATTCAAGGAGAAGGAAAGGCATACCTCATAGGGCACCTTTAGGGCCCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PLATZ

Protein Analysis

213

Amino Acids

24.0

Weight (kDa)

9.05

Isoelectric Point (pI)

67.33

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002320)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G27930 AT2G27930 AT2G27930 AT2G27930 AT2G27930 AT2G27930
fragaria_vesca	FvH4_3g30410 FvH4_3g30410 FvH4_6g17200 FvH4_6g17200
malus_domestica	MD03G1129200.v1.1 MD11G1151300.v1.1 MD12G1103000.v1.1 MD14G1097400.v1.1
prunus_persica	Prupe.6G114500_v2.0.a1 Prupe.6G114500_v2.0.a1 Prupe.7G123100_v2.0.a1
pyrus_communis	pycom11g12330 pycom12g10120 pycom14g09510
rosa_chinensis	RchiOBHm_Chr3g0471281 RchiOBHm_Chr5g0056371
rosa_laevigata	RLG00000024191
rosa_multiflora	Rmu_co8075908.1_g000001 Rmu_sc0000317.1_g000021 Rmu_sc0009082.1_g000006
rosa_roxburghii	Rroxscaffold_1G00023940 Rroxscaffold_6G00410110
rosa_rugosa	Rorug03G0116700 Rorug03G0116800 Rorug05G0299200 Rorug05G0299200
rosa_samantha	Rh3AG166100 Rh3BG191500 Rh3CG181800 Rh3DG184100 Rh5AG370000 Rh5BG381000 Rh5CG404300 Rh5DG394300
rosa_wichuraiana	Rw3G015640 Rw5G034650

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	622
AciI	CCGC	2 cut(s)	5, 190
AcoI	YGGCCR	1 cut(s)	6
AcsI	RAATTY	2 cut(s)	583, 589
AfaI	GTAC	4 cut(s)	107, 255, 285, 551
AfiI	CCNNNNNNNGG	1 cut(s)	327
AflIII	ACRYGT	2 cut(s)	102, 546
AgsI	TTSAA	6 cut(s)	32, 295, 564, 582, 588, 594
AluBI	AGCT	3 cut(s)	333, 403, 435
AluI	AGCT	3 cut(s)	333, 403, 435
Alw21I	GWGCWC	1 cut(s)	335
Alw26I	GTCTC	1 cut(s)	368
AoxI	GGCC	3 cut(s)	6, 302, 632
ApaI	GGGCCC	1 cut(s)	636
ApoI	RAATTY	2 cut(s)	583, 589
AspLEI	GCGC	1 cut(s)	449
AspS9I	GGNCC	4 cut(s)	235, 370, 632, 633
AsuHPI	GGTGA	1 cut(s)	161
AvaII	GGWCC	2 cut(s)	235, 370
BaeGI	GKGCMC	2 cut(s)	625, 636
BaeI	ACNNNNGTAYC	2 cut(s)	533, 566
BanI	GGYRCC	1 cut(s)	622
BanII	GRGCYC	2 cut(s)	335, 636
Bbv12I	GWGCWC	1 cut(s)	335
BbvCI	CCTCAGC	1 cut(s)	306
BccI	CCATC	3 cut(s)	68, 76, 508
BceAI	ACGGC	1 cut(s)	305
BcoDI	GTCTC	1 cut(s)	368
BfaI	CTAG	1 cut(s)	239
BfmI	CTRYAG	1 cut(s)	145
BisI	GCNGC	1 cut(s)	6
BlsI	GCNGC	1 cut(s)	7
BmcAI	AGTACT	1 cut(s)	285
Bme18I	GGWCC	2 cut(s)	235, 370
BmgT120I	GGNCC	4 cut(s)	235, 370, 632, 633
BmiI	GGNNCC	4 cut(s)	18, 372, 624, 634
BmsI	GCATC	2 cut(s)	70, 386
Bpu10I	CCTNAGC	1 cut(s)	306
BpuEI	CTTGAG	2 cut(s)	463, 513
BsaBI	GATNNNNATC	1 cut(s)	499
BsaJI	CCNNGG	1 cut(s)	23
BsaXI	ACNNNNNCTCC	2 cut(s)	550, 580
Bsc4I	CCNNNNNNNGG	1 cut(s)	327
Bse3DI	GCAATG	1 cut(s)	35
Bse8I	GATNNNNATC	1 cut(s)	499
BseDI	CCNNGG	1 cut(s)	23
BseGI	GGATG	1 cut(s)	401
BseJI	GATNNNNATC	1 cut(s)	499
BseLI	CCNNNNNNNGG	1 cut(s)	327
BseMI	GCAATG	1 cut(s)	35
BseMII	CTCAG	2 cut(s)	213, 320
BseRI	GAGGAG	1 cut(s)	479
BseSI	GKGCMC	2 cut(s)	625, 636
Bsh1285I	CGRYCG	1 cut(s)	194
BshFI	GGCC	3 cut(s)	8, 304, 634
BshNI	GGYRCC	1 cut(s)	622
BsiEI	CGRYCG	1 cut(s)	194
BsiHKAI	GWGCWC	1 cut(s)	335
BslFI	GGGAC	1 cut(s)	423
BslI	CCNNNNNNNGG	1 cut(s)	327
BsmAI	GTCTC	1 cut(s)	368
BsmFI	GGGAC	1 cut(s)	423
BsmI	GAATGC	2 cut(s)	101, 540
BsnI	GGCC	3 cut(s)	8, 304, 634
Bsp120I	GGGCCC	1 cut(s)	632
Bsp1286I	GDGCHC	3 cut(s)	335, 625, 636
Bsp143I	GATC	4 cut(s)	149, 166, 183, 517
Bsp19I	CCATGG	1 cut(s)	23
BspACI	CCGC	2 cut(s)	5, 190
BspANI	GGCC	3 cut(s)	8, 304, 634
BspCNI	CTCAG	2 cut(s)	214, 319
BspHI	TCATGA	1 cut(s)	202
BspLI	GGNNCC	4 cut(s)	18, 372, 624, 634
BspMAI	CTGCAG	1 cut(s)	149
BspT107I	GGYRCC	1 cut(s)	622
BsrDI	GCAATG	1 cut(s)	35
BssECI	CCNNGG	1 cut(s)	23
BssMI	GATC	4 cut(s)	149, 166, 183, 517
BssT1I	CCWWGG	1 cut(s)	23
Bst4CI	ACNGT	2 cut(s)	275, 288
Bst6I	CTCTTC	1 cut(s)	456
BstC8I	GCNNGC	2 cut(s)	401, 433
BstDEI	CTNAG	3 cut(s)	112, 222, 306
BstDSI	CCRYGG	1 cut(s)	23
BstF5I	GGATG	1 cut(s)	401
BstHHI	GCGC	1 cut(s)	449
BstKTI	GATC	4 cut(s)	152, 169, 186, 520
BstMAI	GTCTC	1 cut(s)	368
BstMBI	GATC	4 cut(s)	149, 166, 183, 517
BstMCI	CGRYCG	1 cut(s)	194
BstMWI	GCNNNNNNNGC	2 cut(s)	117, 144
BstNSI	RCATGY	2 cut(s)	106, 550
BstSFI	CTRYAG	1 cut(s)	145
BstSLI	GKGCMC	2 cut(s)	625, 636
BsuRI	GGCC	3 cut(s)	8, 304, 634
BtgI	CCRYGG	1 cut(s)	23
BtsCI	GGATG	1 cut(s)	401
BtsIMutI	CAGTG	1 cut(s)	280
Cac8I	GCNNGC	2 cut(s)	401, 433
CciI	TCATGA	1 cut(s)	202
CfoI	GCGC	1 cut(s)	449
Cfr13I	GGNCC	4 cut(s)	235, 370, 632, 633
Csp6I	GTAC	4 cut(s)	106, 254, 284, 550
CviAII	CATG	5 cut(s)	10, 24, 103, 203, 547
CviJI	RGCY	9 cut(s)	8, 28, 50, 304, 310, 333, 403, 435, 634
CviKI_1	RGCY	9 cut(s)	8, 28, 50, 304, 310, 333, 403, 435, 634
CviQI	GTAC	4 cut(s)	106, 254, 284, 550
DdeI	CTNAG	3 cut(s)	112, 222, 306
DpnI	GATC	4 cut(s)	151, 168, 185, 519
DpnII	GATC	4 cut(s)	149, 166, 183, 517
EaeI	YGGCCR	1 cut(s)	6
Eam1104I	CTCTTC	1 cut(s)	456
EarI	CTCTTC	1 cut(s)	456
Ecl136II	GAGCTC	1 cut(s)	333
Eco130I	CCWWGG	1 cut(s)	23
Eco147I	AGGCCT	1 cut(s)	304
Eco24I	GRGCYC	2 cut(s)	335, 636
Eco47I	GGWCC	2 cut(s)	235, 370
Eco53kI	GAGCTC	1 cut(s)	333
EcoICRI	GAGCTC	1 cut(s)	333
EcoO109I	RGGNCCY	3 cut(s)	235, 632, 633
EcoT14I	CCWWGG	1 cut(s)	23
EcoT38I	GRGCYC	2 cut(s)	335, 636
ErhI	CCWWGG	1 cut(s)	23
FaeI	CATG	5 cut(s)	13, 27, 106, 206, 550
FaqI	GGGAC	1 cut(s)	423
FatI	CATG	5 cut(s)	9, 23, 102, 202, 546
Fnu4HI	GCNGC	1 cut(s)	6
FokI	GGATG	1 cut(s)	408
FriOI	GRGCYC	2 cut(s)	335, 636
Fsp4HI	GCNGC	1 cut(s)	6
FspBI	CTAG	1 cut(s)	239
GlaI	GCGC	1 cut(s)	448
GluI	GCNGC	1 cut(s)	6
HaeIII	GGCC	3 cut(s)	8, 304, 634
HhaI	GCGC	1 cut(s)	449
Hin1II	CATG	5 cut(s)	13, 27, 106, 206, 550
Hin6I	GCGC	1 cut(s)	447
HinP1I	GCGC	1 cut(s)	447
HindIII	AAGCTT	2 cut(s)	401, 433
HinfI	GANTC	2 cut(s)	32, 226
HphI	GGTGA	1 cut(s)	161
Hpy188I	TCNGA	3 cut(s)	183, 223, 231
Hpy188III	TCNNGA	3 cut(s)	156, 203, 442
Hpy99I	CGWCG	1 cut(s)	199
HpyAV	CCTTC	5 cut(s)	61, 226, 468, 473, 594
HpyCH4III	ACNGT	2 cut(s)	275, 288
HpyCH4IV	ACGT	1 cut(s)	379
HpyCH4V	TGCA	6 cut(s)	99, 120, 131, 147, 399, 538
HpyF10VI	GCNNNNNNNGC	2 cut(s)	117, 144
HpyF3I	CTNAG	3 cut(s)	112, 222, 306
HpySE526I	ACGT	1 cut(s)	379
Hsp92II	CATG	5 cut(s)	13, 27, 106, 206, 550
HspAI	GCGC	1 cut(s)	447
Kzo9I	GATC	4 cut(s)	149, 166, 183, 517
LmnI	GCTCC	1 cut(s)	330
LpnPI	CCDG	3 cut(s)	100, 172, 370
LweI	GCATC	2 cut(s)	70, 386
MaeI	CTAG	1 cut(s)	239
MaeII	ACGT	1 cut(s)	379
MalI	GATC	4 cut(s)	151, 168, 185, 519
MboI	GATC	4 cut(s)	149, 166, 183, 517
MboII	GAAGA	6 cut(s)	46, 430, 470, 473, 483, 527
MfeI	CAATTG	1 cut(s)	521
MhlI	GDGCHC	3 cut(s)	335, 625, 636
MluCI	AATT	4 cut(s)	177, 521, 583, 589
MnlI	CCTC	8 cut(s)	30, 294, 315, 457, 460, 537, 582, 624
MseI	TTAA	1 cut(s)	324
MslI	CAYNNNNRTG	3 cut(s)	78, 342, 394
MunI	CAATTG	1 cut(s)	521
Mva1269I	GAATGC	2 cut(s)	101, 540
MwoI	GCNNNNNNNGC	2 cut(s)	117, 144
NcoI	CCATGG	1 cut(s)	23
NdeII	GATC	4 cut(s)	149, 166, 183, 517
NlaIII	CATG	5 cut(s)	13, 27, 106, 206, 550
NlaIV	GGNNCC	4 cut(s)	18, 372, 624, 634
NspI	RCATGY	2 cut(s)	106, 550
PagI	TCATGA	1 cut(s)	202
PceI	AGGCCT	1 cut(s)	304
PciI	ACATGT	2 cut(s)	102, 546
PctI	GAATGC	2 cut(s)	101, 540
PfeI	GAWTC	2 cut(s)	32, 226
PkrI	GCNGC	1 cut(s)	7
PpuMI	RGGWCCY	1 cut(s)	235
PscI	ACATGT	2 cut(s)	102, 546
Psp124BI	GAGCTC	1 cut(s)	335
Psp5II	RGGWCCY	1 cut(s)	235
PspN4I	GGNNCC	4 cut(s)	18, 372, 624, 634
PspOMI	GGGCCC	1 cut(s)	632
PspPI	GGNCC	4 cut(s)	235, 370, 632, 633
PspPPI	RGGWCCY	1 cut(s)	235
PstI	CTGCAG	1 cut(s)	149
RsaI	GTAC	4 cut(s)	107, 255, 285, 551
RsaNI	GTAC	4 cut(s)	106, 254, 284, 550
RseI	CAYNNNNRTG	3 cut(s)	78, 342, 394
SacI	GAGCTC	1 cut(s)	335
SaqAI	TTAA	1 cut(s)	324
SatI	GCNGC	1 cut(s)	6
Sau3AI	GATC	4 cut(s)	149, 166, 183, 517
Sau96I	GGNCC	4 cut(s)	235, 370, 632, 633
ScaI	AGTACT	1 cut(s)	285
SduI	GDGCHC	3 cut(s)	335, 625, 636
SetI	ASST	8 cut(s)	237, 335, 382, 405, 437, 574, 616, 628
SfaNI	GCATC	2 cut(s)	70, 386
SfcI	CTRYAG	1 cut(s)	145
SinI	GGWCC	2 cut(s)	235, 370
SmiMI	CAYNNNNRTG	3 cut(s)	78, 342, 394
SmlI	CTYRAG	2 cut(s)	442, 528
SmoI	CTYRAG	2 cut(s)	442, 528
Sse9I	AATT	4 cut(s)	177, 521, 583, 589
SseBI	AGGCCT	1 cut(s)	304
SsiI	CCGC	2 cut(s)	5, 190
SspMI	CTAG	1 cut(s)	239
SstI	GAGCTC	1 cut(s)	335
StuI	AGGCCT	1 cut(s)	304
StyI	CCWWGG	1 cut(s)	23
TaaI	ACNGT	2 cut(s)	275, 288
TaiI	ACGT	1 cut(s)	382
TasI	AATT	4 cut(s)	177, 521, 583, 589
TatI	WGTACW	3 cut(s)	105, 253, 283
TauI	GCSGC	1 cut(s)	8
TfiI	GAWTC	2 cut(s)	32, 226
Tru1I	TTAA	1 cut(s)	324
Tru9I	TTAA	1 cut(s)	324
TscAI	CASTG	1 cut(s)	280
TspDTI	ATGAA	1 cut(s)	378
TspRI	CASTG	1 cut(s)	280
VpaK11BI	GGWCC	2 cut(s)	235, 370
XapI	RAATTY	2 cut(s)	583, 589
XceI	RCATGY	2 cut(s)	106, 550
XcmI	CCANNNNNNNNNTGG	1 cut(s)	364
XspI	CTAG	1 cut(s)	239
ZrmI	AGTACT	1 cut(s)	285

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.