RchiOBHm_Chr3g0471281

PLATZ transcription factor

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
3
OG0002320
Physical Location & Seq
Reverse (-)
17170759 .. 17172473
1715 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ43702

Sequence Viewer

Length: 651 bp
ATGGACACAACAATGTTGATACCGCCATGGCTGGAGCAGTTGCTGACCTCGTCGTTCTTCACCATCTGCCGTACTCACGGCGACGCAGCCAGGAGTGAATGCAACATGTTCTGCTTGGACTGCGGTGGAGATGCATTTTGCTTCTACTGCCGCTCCTCCAGACACAAAGACCACCAAGTGATCCAGATAAGGAGGTCTTCTTACCATGATGTGGTGAGGGTTTCGGAGATACAAAAGGTTCTGGACATTAGTGGGGTTCAGACCTATGTGATAAACAGTGCCAGAGTTCTGTTCTTGAATGAGAGGCCTCAACCAAAAGCTGGAATCAAAGGAGTCCCCCACATTTGTGAAATCTGTAGCAGAGGCCTCTTGGACCCATTTCGATTCTGCTCTCTGGGTTGTAAGCTTGTGGGAATAAAGAGGAATGGGGATGCCAACTTTACATTGGAGGCAAGGAATGAAGAGGGAAATGGAAATGGAACAAGAGAAGGAATGATAACATCATCAACAACAAGGAGAGTGACAATGGGGGAGGAAGAGTTGCGTGAAGGCTCACAACAAGACATGTACCCGGACACGCCTCCACCACCTCCTTCTTCAACTACAAGGAGAAGGAAAGGCATTCCTCATAGGGCACCATTTGGGACCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
PLATZ

Protein Analysis

216

Amino Acids

24.23

Weight (kDa)

8.56

Isoelectric Point (pI)

59.15

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PLATZ PF04640 64 - 136 2.6e-30 PLATZ transcription factor
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 634
AccB7I CCANNNNNTGG 2 cut(s) 211, 320
AccBSI CCGCTC 1 cut(s) 153
AciI CCGC 3 cut(s) 23, 123, 151
AclWI GGATC 1 cut(s) 175
AdeI CACNNNGTG 1 cut(s) 178
AfaI GTAC 2 cut(s) 73, 569
AfiI CCNNNNNNNGG 2 cut(s) 211, 320
AflIII ACRYGT 2 cut(s) 105, 564
AgsI TTSAA 2 cut(s) 298, 600
AjnI CCWGG 1 cut(s) 89
AleI CACNNNNGTG 1 cut(s) 345
AluBI AGCT 2 cut(s) 320, 406
AluI AGCT 2 cut(s) 320, 406
AlwI GGATC 1 cut(s) 175
AlwNI CAGNNNCTG 1 cut(s) 43
AoxI GGCC 2 cut(s) 305, 364
ApeKI GCWGC 1 cut(s) 86
AspS9I GGNCC 2 cut(s) 373, 645
AsuC2I CCSGG 1 cut(s) 572
AsuHPI GGTGA 2 cut(s) 52, 226
AvaII GGWCC 2 cut(s) 373, 645
BaeGI GKGCMC 1 cut(s) 637
BanI GGYRCC 1 cut(s) 634
BbsI GAAGAC 1 cut(s) 189
BbvI GCAGC 1 cut(s) 98
BccI CCATC 1 cut(s) 71
BceAI ACGGC 2 cut(s) 54, 94
BciT130I CCWGG 1 cut(s) 91
BcnI CCSGG 1 cut(s) 572
BfmI CTRYAG 1 cut(s) 355
BisI GCNGC 2 cut(s) 87, 151
BlsI GCNGC 2 cut(s) 88, 152
Bme1390I CCNGG 2 cut(s) 91, 572
Bme18I GGWCC 2 cut(s) 373, 645
BmgT120I GGNCC 2 cut(s) 373, 645
BmiI GGNNCC 3 cut(s) 375, 636, 646
BmrFI CCNGG 2 cut(s) 91, 572
BmsI GCATC 2 cut(s) 121, 421
BpiI GAAGAC 1 cut(s) 189
BpmI CTGGAG 2 cut(s) 53, 142
BpuMI CCSGG 1 cut(s) 572
BsaJI CCNNGG 1 cut(s) 26
BsaXI ACNNNNNCTCC 4 cut(s) 137, 167, 524, 554
Bsc4I CCNNNNNNNGG 2 cut(s) 211, 320
BseBI CCWGG 1 cut(s) 91
BseDI CCNNGG 1 cut(s) 26
BseGI GGATG 1 cut(s) 436
BseLI CCNNNNNNNGG 2 cut(s) 211, 320
BseRI GAGGAG 1 cut(s) 145
BseSI GKGCMC 1 cut(s) 637
BseXI GCAGC 1 cut(s) 98
BshFI GGCC 2 cut(s) 307, 366
BshNI GGYRCC 1 cut(s) 634
BsiSI CCGG 1 cut(s) 572
BslFI GGGAC 1 cut(s) 320
BslI CCNNNNNNNGG 2 cut(s) 211, 320
BsmFI GGGAC 1 cut(s) 320
BsmI GAATGC 2 cut(s) 104, 621
BsnI GGCC 2 cut(s) 307, 366
Bsp1286I GDGCHC 1 cut(s) 637
Bsp143I GATC 1 cut(s) 180
Bsp19I CCATGG 1 cut(s) 26
BspACI CCGC 3 cut(s) 23, 123, 151
BspANI GGCC 2 cut(s) 307, 366
BspLI GGNNCC 3 cut(s) 375, 636, 646
BspPI GGATC 1 cut(s) 175
BspT107I GGYRCC 1 cut(s) 634
BsrBI CCGCTC 1 cut(s) 153
BssECI CCNNGG 1 cut(s) 26
BssMI GATC 1 cut(s) 180
BssT1I CCWWGG 1 cut(s) 26
Bst2UI CCWGG 1 cut(s) 91
Bst4CI ACNGT 1 cut(s) 278
Bst6I CTCTTC 2 cut(s) 456, 531
BstDSI CCRYGG 1 cut(s) 26
BstF5I GGATG 1 cut(s) 436
BstKTI GATC 1 cut(s) 183
BstMBI GATC 1 cut(s) 180
BstMWI GCNNNNNNNGC 2 cut(s) 120, 147
BstNI CCWGG 1 cut(s) 91
BstNSI RCATGY 2 cut(s) 109, 568
BstSCI CCNGG 2 cut(s) 89, 570
BstSFI CTRYAG 1 cut(s) 355
BstSLI GKGCMC 1 cut(s) 637
BstV1I GCAGC 1 cut(s) 98
BstV2I GAAGAC 1 cut(s) 189
BsuRI GGCC 2 cut(s) 307, 366
BtgI CCRYGG 1 cut(s) 26
BtsCI GGATG 1 cut(s) 436
BtsIMutI CAGTG 1 cut(s) 283
CaiI CAGNNNCTG 1 cut(s) 43
Cfr13I GGNCC 2 cut(s) 373, 645
CseI GACGC 1 cut(s) 92
Csp6I GTAC 2 cut(s) 72, 568
CviAII CATG 4 cut(s) 27, 106, 206, 565
CviJI RGCY 7 cut(s) 31, 89, 307, 320, 366, 406, 552
CviKI_1 RGCY 7 cut(s) 31, 89, 307, 320, 366, 406, 552
CviQI GTAC 2 cut(s) 72, 568
DpnI GATC 1 cut(s) 182
DpnII GATC 1 cut(s) 180
DraIII CACNNNGTG 1 cut(s) 178
Eam1104I CTCTTC 2 cut(s) 456, 531
EarI CTCTTC 2 cut(s) 456, 531
Eco130I CCWWGG 1 cut(s) 26
Eco147I AGGCCT 2 cut(s) 307, 366
Eco47I GGWCC 2 cut(s) 373, 645
EcoO109I RGGNCCY 1 cut(s) 645
EcoRII CCWGG 1 cut(s) 89
EcoT14I CCWWGG 1 cut(s) 26
EcoT22I ATGCAT 1 cut(s) 136
ErhI CCWWGG 1 cut(s) 26
FaeI CATG 4 cut(s) 30, 109, 209, 568
FaiI YATR 6 cut(s) 28, 107, 207, 267, 566, 630
FalI AAGNNNNNCTT 2 cut(s) 181, 213
FaqI GGGAC 1 cut(s) 320
FatI CATG 4 cut(s) 26, 105, 205, 564
Fnu4HI GCNGC 2 cut(s) 87, 151
FokI GGATG 1 cut(s) 443
Fsp4HI GCNGC 2 cut(s) 87, 151
GluI GCNGC 2 cut(s) 87, 151
GsuI CTGGAG 2 cut(s) 53, 142
HaeIII GGCC 2 cut(s) 307, 366
HapII CCGG 1 cut(s) 572
HgaI GACGC 1 cut(s) 92
Hin1II CATG 4 cut(s) 30, 109, 209, 568
HindIII AAGCTT 1 cut(s) 404
HinfI GANTC 3 cut(s) 324, 333, 384
HpaII CCGG 1 cut(s) 572
HphI GGTGA 2 cut(s) 52, 226
Hpy188I TCNGA 2 cut(s) 226, 261
Hpy188III TCNNGA 4 cut(s) 159, 184, 242, 295
Hpy99I CGWCG 2 cut(s) 55, 86
HpyAV CCTTC 4 cut(s) 482, 542, 603, 606
HpyCH4III ACNGT 1 cut(s) 278
HpyCH4V TGCA 2 cut(s) 102, 134
HpyF10VI GCNNNNNNNGC 2 cut(s) 120, 147
Hsp92II CATG 4 cut(s) 30, 109, 209, 568
Kzo9I GATC 1 cut(s) 180
LmnI GCTCC 2 cut(s) 34, 158
Lsp1109I GCAGC 1 cut(s) 98
LweI GCATC 2 cut(s) 121, 421
MaeIII GTNAC 1 cut(s) 520
MalI GATC 1 cut(s) 182
MbiI CCGCTC 1 cut(s) 153
MboI GATC 1 cut(s) 180
MboII GAAGA 5 cut(s) 49, 189, 473, 548, 588
MhlI GDGCHC 1 cut(s) 637
MlyI GAGTC 1 cut(s) 342
Mph1103I ATGCAT 1 cut(s) 136
MslI CAYNNNNRTG 2 cut(s) 11, 345
MspI CCGG 1 cut(s) 572
MspR9I CCNGG 2 cut(s) 91, 572
Mva1269I GAATGC 2 cut(s) 104, 621
MvaI CCWGG 1 cut(s) 91
MwoI GCNNNNNNNGC 2 cut(s) 120, 147
NciI CCSGG 1 cut(s) 572
NcoI CCATGG 1 cut(s) 26
NdeII GATC 1 cut(s) 180
NlaIII CATG 4 cut(s) 30, 109, 209, 568
NlaIV GGNNCC 3 cut(s) 375, 636, 646
NmuCI GTSAC 1 cut(s) 520
NsiI ATGCAT 1 cut(s) 136
NspI RCATGY 2 cut(s) 109, 568
OliI CACNNNNGTG 1 cut(s) 345
PceI AGGCCT 2 cut(s) 307, 366
PciI ACATGT 2 cut(s) 105, 564
PctI GAATGC 2 cut(s) 104, 621
PfeI GAWTC 2 cut(s) 324, 384
PflFI GACNNNGTC 1 cut(s) 49
PflMI CCANNNNNTGG 2 cut(s) 211, 320
PkrI GCNGC 2 cut(s) 88, 152
PleI GAGTC 1 cut(s) 341
PpsI GAGTC 1 cut(s) 341
PpuMI RGGWCCY 1 cut(s) 645
PscI ACATGT 2 cut(s) 105, 564
Psp5II RGGWCCY 1 cut(s) 645
Psp6I CCWGG 1 cut(s) 89
PspGI CCWGG 1 cut(s) 89
PspN4I GGNNCC 3 cut(s) 375, 636, 646
PspPI GGNCC 2 cut(s) 373, 645
PspPPI RGGWCCY 1 cut(s) 645
PstNI CAGNNNCTG 1 cut(s) 43
PsyI GACNNNGTC 1 cut(s) 49
RsaI GTAC 2 cut(s) 73, 569
RsaNI GTAC 2 cut(s) 72, 568
RseI CAYNNNNRTG 2 cut(s) 11, 345
SatI GCNGC 2 cut(s) 87, 151
Sau3AI GATC 1 cut(s) 180
Sau96I GGNCC 2 cut(s) 373, 645
SchI GAGTC 1 cut(s) 342
ScrFI CCNGG 2 cut(s) 91, 572
SduI GDGCHC 1 cut(s) 637
SetI ASST 8 cut(s) 50, 197, 240, 266, 322, 408, 592, 650
SfaNI GCATC 2 cut(s) 121, 421
SfcI CTRYAG 1 cut(s) 355
SinI GGWCC 2 cut(s) 373, 645
SmiMI CAYNNNNRTG 2 cut(s) 11, 345
SseBI AGGCCT 2 cut(s) 307, 366
SsiI CCGC 3 cut(s) 23, 123, 151
StuI AGGCCT 2 cut(s) 307, 366
StyD4I CCNGG 2 cut(s) 89, 570
StyI CCWWGG 1 cut(s) 26
TaaI ACNGT 1 cut(s) 278
TaqI TCGA 1 cut(s) 382
TauI GCSGC 1 cut(s) 153
TfiI GAWTC 2 cut(s) 324, 384
TscAI CASTG 1 cut(s) 283
TseFI GTSAC 1 cut(s) 520
TseI GCWGC 1 cut(s) 86
Tsp45I GTSAC 1 cut(s) 520
TspDTI ATGAA 1 cut(s) 474
TspRI CASTG 1 cut(s) 283
Tth111I GACNNNGTC 1 cut(s) 49
Van91I CCANNNNNTGG 2 cut(s) 211, 320
VpaK11BI GGWCC 2 cut(s) 373, 645
XceI RCATGY 2 cut(s) 109, 568
XcmI CCANNNNNNNNNTGG 1 cut(s) 442
Zsp2I ATGCAT 1 cut(s) 136
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.