Rroxscaffold_1G00023940

PLATZ transcription factor

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000001
OG0002320
Physical Location & Seq
Reverse (-)
29598453 .. 29600864
2412 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_1G00023940.1

Sequence Viewer

Length: 684 bp
ATGTTGGTGCCTTCATGGCTCGAGTCATTGTTATCCACAGCCTTCTTCTCCATCTGCCCAGCACACAGAGATGCCCCGAGAAGCGAATGCAACATGTACTGCCTGGATTGCCACAACGGGGCGTTTTGCTTTTACTGCAGATCATCAAGGCACAAAGATCACCAAGTAATTCAGATCAGACGGTCGTCGTATCACGACGTTGTTAGGGTGAATGAAATTCAGAAGGTTTTGGATATCACTGGAGTTCAGACGTATGTGATAAACAGTGCGAGAGTGCTGTTCTTGAATGAGAGGCCTCAGCCCAAAACTGCTGTCAAAGGGAGCTCACATATCTGTGAAATCTGTGGGAGGAGTCTCTTGGACCCTTTTCGGTTTTGTTCATTGGGATGCAAGCTTGTAGGACTAAAGAAGAATGGGGATGCGAGCTTTATCTTCAGCGCGAAGAATGGGGATGCGAGCTTTATCTTCAAGACTGGTGAAGAGAATGAGGAGGGAAGAAGGGAAGGGATAGCAATAAGGTTGCCATCAAAAGAAGGAGATCATCAAGAGCAATTTCGTAGGGAAGCAACAATGCAACATCCACAACAAGAACAAGACATGTACCAAAGCATTCCTCCTCCAACCCAATATTCAAGATCAAGAAGAAGAAAGGGCATTCCTCATAGGGCACCTTTAGGGCCCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
PLATZ

Protein Analysis

227

Amino Acids

25.89

Weight (kDa)

9.05

Isoelectric Point (pI)

67.09

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PLATZ PF04640 60 - 132 4.1e-31 PLATZ transcription factor
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 2 cut(s) 7, 667
AccII CGCG 1 cut(s) 440
AcsI RAATTY 1 cut(s) 216
AcuI CTGAAG 1 cut(s) 418
AfaI GTAC 2 cut(s) 98, 602
AfiI CCNNNNNNNGG 1 cut(s) 118
AflIII ACRYGT 2 cut(s) 93, 597
AgsI TTSAA 3 cut(s) 286, 469, 633
AjnI CCWGG 1 cut(s) 102
AjuI GAANNNNNNNTTGG 2 cut(s) 613, 645
AluBI AGCT 4 cut(s) 324, 394, 426, 459
AluI AGCT 4 cut(s) 324, 394, 426, 459
Alw21I GWGCWC 1 cut(s) 326
Alw26I GTCTC 1 cut(s) 359
Ama87I CYCGRG 2 cut(s) 20, 76
AoxI GGCC 2 cut(s) 293, 677
ApaI GGGCCC 1 cut(s) 681
ApoI RAATTY 1 cut(s) 216
ArsI GACNNNNNNTTYG 2 cut(s) 297, 329
AspLEI GCGC 1 cut(s) 440
AspS9I GGNCC 3 cut(s) 361, 677, 678
AsuHPI GGTGA 3 cut(s) 152, 220, 488
AvaI CYCGRG 2 cut(s) 20, 76
AvaII GGWCC 1 cut(s) 361
BaeGI GKGCMC 2 cut(s) 670, 681
BanI GGYRCC 2 cut(s) 7, 667
BanII GRGCYC 2 cut(s) 326, 681
Bbv12I GWGCWC 1 cut(s) 326
BbvCI CCTCAGC 1 cut(s) 297
BccI CCATC 2 cut(s) 59, 532
BciT130I CCWGG 1 cut(s) 104
BcoDI GTCTC 1 cut(s) 359
BfmI CTRYAG 1 cut(s) 136
BglI GCCNNNNNGGC 1 cut(s) 16
Bme1390I CCNGG 1 cut(s) 104
Bme18I GGWCC 1 cut(s) 361
BmeT110I CYCGRG 2 cut(s) 20, 76
BmgT120I GGNCC 3 cut(s) 361, 677, 678
BmiI GGNNCC 4 cut(s) 9, 363, 669, 679
BmrFI CCNGG 1 cut(s) 104
BmsI GCATC 4 cut(s) 61, 377, 409, 442
BoxI GACNNNNGTC 1 cut(s) 184
BpmI CTGGAG 1 cut(s) 261
Bpu10I CCTNAGC 1 cut(s) 297
Bsc4I CCNNNNNNNGG 1 cut(s) 118
Bse1I ACTGG 2 cut(s) 244, 478
BseBI CCWGG 1 cut(s) 104
BseGI GGATG 4 cut(s) 392, 424, 457, 577
BseLI CCNNNNNNNGG 1 cut(s) 118
BseMII CTCAG 1 cut(s) 311
BseNI ACTGG 2 cut(s) 244, 478
BseRI GAGGAG 3 cut(s) 364, 503, 606
BseSI GKGCMC 2 cut(s) 670, 681
BseYI CCCAGC 1 cut(s) 58
Bsh1236I CGCG 1 cut(s) 440
Bsh1285I CGRYCG 1 cut(s) 185
BshFI GGCC 2 cut(s) 295, 679
BshNI GGYRCC 2 cut(s) 7, 667
BsiEI CGRYCG 1 cut(s) 185
BsiHKAI GWGCWC 1 cut(s) 326
BsiHKCI CYCGRG 2 cut(s) 20, 76
BslI CCNNNNNNNGG 1 cut(s) 118
BsmAI GTCTC 1 cut(s) 359
BsmI GAATGC 3 cut(s) 92, 609, 654
BsnI GGCC 2 cut(s) 295, 679
BsoBI CYCGRG 2 cut(s) 20, 76
Bsp120I GGGCCC 1 cut(s) 677
Bsp1286I GDGCHC 3 cut(s) 326, 670, 681
Bsp143I GATC 5 cut(s) 140, 157, 174, 538, 635
BspANI GGCC 2 cut(s) 295, 679
BspCNI CTCAG 1 cut(s) 310
BspFNI CGCG 1 cut(s) 440
BspLI GGNNCC 4 cut(s) 9, 363, 669, 679
BspMAI CTGCAG 1 cut(s) 140
BspT107I GGYRCC 2 cut(s) 7, 667
BsrI ACTGG 2 cut(s) 244, 478
BssMI GATC 5 cut(s) 140, 157, 174, 538, 635
Bst2UI CCWGG 1 cut(s) 104
Bst4CI ACNGT 2 cut(s) 183, 266
Bst6I CTCTTC 1 cut(s) 474
BstC8I GCNNGC 3 cut(s) 392, 424, 457
BstDEI CTNAG 1 cut(s) 297
BstF5I GGATG 4 cut(s) 392, 424, 457, 577
BstFNI CGCG 1 cut(s) 440
BstHHI GCGC 1 cut(s) 440
BstKTI GATC 5 cut(s) 143, 160, 177, 541, 638
BstMAI GTCTC 1 cut(s) 359
BstMBI GATC 5 cut(s) 140, 157, 174, 538, 635
BstMCI CGRYCG 1 cut(s) 185
BstMWI GCNNNNNNNGC 3 cut(s) 16, 108, 135
BstNI CCWGG 1 cut(s) 104
BstNSI RCATGY 2 cut(s) 97, 601
BstPAI GACNNNNGTC 1 cut(s) 184
BstSCI CCNGG 1 cut(s) 102
BstSFI CTRYAG 1 cut(s) 136
BstSLI GKGCMC 2 cut(s) 670, 681
BstUI CGCG 1 cut(s) 440
BsuRI GGCC 2 cut(s) 295, 679
BtsCI GGATG 4 cut(s) 392, 424, 457, 577
BtsIMutI CAGTG 2 cut(s) 237, 271
Cac8I GCNNGC 3 cut(s) 392, 424, 457
CfoI GCGC 1 cut(s) 440
Cfr13I GGNCC 3 cut(s) 361, 677, 678
Csp6I GTAC 2 cut(s) 97, 601
CviAII CATG 3 cut(s) 15, 94, 598
CviJI RGCY 9 cut(s) 19, 41, 295, 301, 324, 394, 426, 459, 679
CviKI_1 RGCY 9 cut(s) 19, 41, 295, 301, 324, 394, 426, 459, 679
CviQI GTAC 2 cut(s) 97, 601
DdeI CTNAG 1 cut(s) 297
DpnI GATC 5 cut(s) 142, 159, 176, 540, 637
DpnII GATC 5 cut(s) 140, 157, 174, 538, 635
Eam1104I CTCTTC 1 cut(s) 474
EarI CTCTTC 1 cut(s) 474
Ecl136II GAGCTC 1 cut(s) 324
Eco147I AGGCCT 1 cut(s) 295
Eco24I GRGCYC 2 cut(s) 326, 681
Eco32I GATATC 1 cut(s) 235
Eco47I GGWCC 1 cut(s) 361
Eco53kI GAGCTC 1 cut(s) 324
Eco57I CTGAAG 1 cut(s) 418
Eco88I CYCGRG 2 cut(s) 20, 76
EcoICRI GAGCTC 1 cut(s) 324
EcoO109I RGGNCCY 2 cut(s) 677, 678
EcoRII CCWGG 1 cut(s) 102
EcoRV GATATC 1 cut(s) 235
EcoT38I GRGCYC 2 cut(s) 326, 681
FaeI CATG 3 cut(s) 18, 97, 601
FaiI YATR 6 cut(s) 16, 95, 255, 330, 599, 663
FatI CATG 3 cut(s) 14, 93, 597
FokI GGATG 4 cut(s) 399, 431, 464, 564
FriOI GRGCYC 2 cut(s) 326, 681
GlaI GCGC 1 cut(s) 439
GsaI CCCAGC 1 cut(s) 62
GsuI CTGGAG 1 cut(s) 261
HaeIII GGCC 2 cut(s) 295, 679
HhaI GCGC 1 cut(s) 440
Hin1II CATG 3 cut(s) 18, 97, 601
Hin6I GCGC 1 cut(s) 438
HinP1I GCGC 1 cut(s) 438
HindIII AAGCTT 1 cut(s) 392
HinfI GANTC 2 cut(s) 23, 352
HphI GGTGA 3 cut(s) 152, 220, 488
Hpy188I TCNGA 4 cut(s) 174, 179, 222, 249
Hpy188III TCNNGA 6 cut(s) 194, 283, 469, 545, 633, 639
Hpy99I CGWCG 2 cut(s) 190, 200
HpyAV CCTTC 6 cut(s) 21, 52, 217, 492, 497, 527
HpyCH4III ACNGT 2 cut(s) 183, 266
HpyCH4IV ACGT 2 cut(s) 198, 251
HpyCH4V TGCA 4 cut(s) 90, 138, 390, 574
HpyF10VI GCNNNNNNNGC 3 cut(s) 16, 108, 135
HpyF3I CTNAG 1 cut(s) 297
HpySE526I ACGT 2 cut(s) 198, 251
Hsp92II CATG 3 cut(s) 18, 97, 601
HspAI GCGC 1 cut(s) 438
Kzo9I GATC 5 cut(s) 140, 157, 174, 538, 635
LmnI GCTCC 1 cut(s) 321
LpnPI CCDG 5 cut(s) 72, 89, 116, 225, 459
LweI GCATC 4 cut(s) 61, 377, 409, 442
MaeII ACGT 2 cut(s) 198, 251
MalI GATC 5 cut(s) 142, 159, 176, 540, 637
MboI GATC 5 cut(s) 140, 157, 174, 538, 635
MboII GAAGA 9 cut(s) 37, 421, 424, 454, 457, 491, 507, 654, 657
MhlI GDGCHC 3 cut(s) 326, 670, 681
MluCI AATT 3 cut(s) 168, 216, 551
MlyI GAGTC 2 cut(s) 32, 361
MmeI TCCRAC 1 cut(s) 644
MnlI CCTC 8 cut(s) 285, 306, 342, 481, 484, 624, 627, 669
MslI CAYNNNNRTG 3 cut(s) 69, 333, 385
MspR9I CCNGG 1 cut(s) 104
Mva1269I GAATGC 3 cut(s) 92, 609, 654
MvaI CCWGG 1 cut(s) 104
MvnI CGCG 1 cut(s) 440
MwoI GCNNNNNNNGC 3 cut(s) 16, 108, 135
NdeII GATC 5 cut(s) 140, 157, 174, 538, 635
NlaIII CATG 3 cut(s) 18, 97, 601
NlaIV GGNNCC 4 cut(s) 9, 363, 669, 679
NspI RCATGY 2 cut(s) 97, 601
PaeR7I CTCGAG 1 cut(s) 20
PceI AGGCCT 1 cut(s) 295
PciI ACATGT 2 cut(s) 93, 597
PctI GAATGC 3 cut(s) 92, 609, 654
PleI GAGTC 2 cut(s) 31, 360
PpsI GAGTC 2 cut(s) 31, 360
PscI ACATGT 2 cut(s) 93, 597
PshAI GACNNNNGTC 1 cut(s) 184
Psp124BI GAGCTC 1 cut(s) 326
Psp6I CCWGG 1 cut(s) 102
PspFI CCCAGC 1 cut(s) 58
PspGI CCWGG 1 cut(s) 102
PspN4I GGNNCC 4 cut(s) 9, 363, 669, 679
PspOMI GGGCCC 1 cut(s) 677
PspPI GGNCC 3 cut(s) 361, 677, 678
PspXI VCTCGAGB 1 cut(s) 20
PstI CTGCAG 1 cut(s) 140
RsaI GTAC 2 cut(s) 98, 602
RsaNI GTAC 2 cut(s) 97, 601
RseI CAYNNNNRTG 3 cut(s) 69, 333, 385
SacI GAGCTC 1 cut(s) 326
Sau3AI GATC 5 cut(s) 140, 157, 174, 538, 635
Sau96I GGNCC 3 cut(s) 361, 677, 678
SchI GAGTC 2 cut(s) 32, 361
ScrFI CCNGG 1 cut(s) 104
SduI GDGCHC 3 cut(s) 326, 670, 681
SetI ASST 9 cut(s) 201, 228, 254, 326, 396, 428, 461, 521, 673
SfaNI GCATC 4 cut(s) 61, 377, 409, 442
SfcI CTRYAG 1 cut(s) 136
Sfr274I CTCGAG 1 cut(s) 20
SinI GGWCC 1 cut(s) 361
SlaI CTCGAG 1 cut(s) 20
SmiMI CAYNNNNRTG 3 cut(s) 69, 333, 385
SmlI CTYRAG 1 cut(s) 20
SmoI CTYRAG 1 cut(s) 20
Sse9I AATT 3 cut(s) 168, 216, 551
SseBI AGGCCT 1 cut(s) 295
SspI AATATT 1 cut(s) 629
SstI GAGCTC 1 cut(s) 326
StuI AGGCCT 1 cut(s) 295
StyD4I CCNGG 1 cut(s) 102
TaaI ACNGT 2 cut(s) 183, 266
TaiI ACGT 2 cut(s) 201, 254
TaqI TCGA 1 cut(s) 21
TasI AATT 3 cut(s) 168, 216, 551
TatI WGTACW 1 cut(s) 96
TscAI CASTG 2 cut(s) 244, 271
TspDTI ATGAA 2 cut(s) 228, 369
TspRI CASTG 2 cut(s) 244, 271
VpaK11BI GGWCC 1 cut(s) 361
XapI RAATTY 1 cut(s) 216
XceI RCATGY 2 cut(s) 97, 601
XhoI CTCGAG 1 cut(s) 20
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.