FvH4_3g30410

PLATZ transcription factor

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb3
OG0002320
Physical Location & Seq
Forward (+)
23665469 .. 23667773
2305 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_3g30410.t2

Sequence Viewer

Length: 675 bp
ATGAAGGAGGAGATGTTGGTGCCTTCATGGCTTGAGTCATTGCTATCCACAACATTCTTCTCCATCTGCTCAACACATAGAGATGCCCCGAGAAGCGAATGCAACATGTACTGCCTGGATTGCCGCAACGTTGGTGCGTTTTGCTTTTACTGCAGATCATCAAGGCACAAAGATCACCAAGTAATTCAGATCAGACGGTCGTCTTATCACGATGTTGTTAGGGTGAATGAAATTCAGAAGGTTTTGGATATCACTGCAGTTCAGACGTATGTGATAAACAGTGCGAGAGTGCTGTTCTTGAATGAGAGGCCTCAGCCCAAAACTGCTGTCAAAGGGAGCTCACATATCTGTGAAGTTTGTGGGAGGAGTCTCTTAGACCCTTTTCGTTTTTGTTCATTGGGATGCAAGCTTGTAGGACTAAAGCAGAATGGGGATGCGAGTTTTATCTTCAGCGCAAAGAATGGTGAAGGGAATGAGGAGGGAAGAAGAAGGGAAGGGACAGCAATAAGGTTGCCATCAAAAGAAGGAGATCAATTTGGTAGTGAAGCAACAATGCAACATCAACAACAAGAACAAGACATGTACCAAAGCACTCCTCCTCCTCCTCCTCCACCCCAATATTCAAGATCAAGAAGAAGAAAGGGAATTCCTCATCGGGCACCTTTAGGGCCCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
PLATZ

Protein Analysis

225

Amino Acids

25.42

Weight (kDa)

9.06

Isoelectric Point (pI)

70.68

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PLATZ PF04640 61 - 133 4e-31 PLATZ transcription factor
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 2 cut(s) 19, 658
AciI CCGC 1 cut(s) 124
AclI AACGTT 1 cut(s) 129
AcsI RAATTY 2 cut(s) 231, 645
AcuI CTGAAG 1 cut(s) 433
AfaI GTAC 2 cut(s) 110, 584
AflIII ACRYGT 2 cut(s) 105, 579
AgsI TTSAA 2 cut(s) 301, 624
AjnI CCWGG 1 cut(s) 114
AluBI AGCT 2 cut(s) 339, 409
AluI AGCT 2 cut(s) 339, 409
Alw21I GWGCWC 1 cut(s) 341
Alw26I GTCTC 1 cut(s) 374
Ama87I CYCGRG 1 cut(s) 88
AoxI GGCC 2 cut(s) 308, 668
ApaI GGGCCC 1 cut(s) 672
ApoI RAATTY 2 cut(s) 231, 645
ArsI GACNNNNNNTTYG 2 cut(s) 312, 344
AspLEI GCGC 1 cut(s) 455
AspS9I GGNCC 2 cut(s) 668, 669
AsuHPI GGTGA 3 cut(s) 167, 235, 476
AvaI CYCGRG 1 cut(s) 88
BaeGI GKGCMC 2 cut(s) 661, 672
BanI GGYRCC 2 cut(s) 19, 658
BanII GRGCYC 2 cut(s) 341, 672
Bbv12I GWGCWC 1 cut(s) 341
BbvCI CCTCAGC 1 cut(s) 312
BccI CCATC 2 cut(s) 71, 523
BciT130I CCWGG 1 cut(s) 116
BcoDI GTCTC 1 cut(s) 374
BfmI CTRYAG 2 cut(s) 151, 255
BglI GCCNNNNNGGC 1 cut(s) 28
BisI GCNGC 1 cut(s) 124
BlsI GCNGC 1 cut(s) 125
Bme1390I CCNGG 1 cut(s) 116
BmeT110I CYCGRG 1 cut(s) 88
BmgT120I GGNCC 2 cut(s) 668, 669
BmiI GGNNCC 3 cut(s) 21, 660, 670
BmrFI CCNGG 1 cut(s) 116
BmsI GCATC 3 cut(s) 73, 392, 424
BoxI GACNNNNGTC 1 cut(s) 199
Bpu10I CCTNAGC 1 cut(s) 312
BpuEI CTTGAG 1 cut(s) 53
BsaXI ACNNNNNCTCC 3 cut(s) 29, 583, 613
Bse3DI GCAATG 1 cut(s) 38
BseBI CCWGG 1 cut(s) 116
BseGI GGATG 2 cut(s) 407, 439
BseMI GCAATG 1 cut(s) 38
BseMII CTCAG 1 cut(s) 326
BseRI GAGGAG 8 cut(s) 23, 379, 491, 585, 588, 591, 594, 597
BseSI GKGCMC 2 cut(s) 661, 672
Bsh1285I CGRYCG 1 cut(s) 200
BshFI GGCC 2 cut(s) 310, 670
BshNI GGYRCC 2 cut(s) 19, 658
BsiEI CGRYCG 1 cut(s) 200
BsiHKAI GWGCWC 1 cut(s) 341
BsiHKCI CYCGRG 1 cut(s) 88
BslFI GGGAC 1 cut(s) 511
BsmAI GTCTC 1 cut(s) 374
BsmFI GGGAC 1 cut(s) 511
BsmI GAATGC 1 cut(s) 104
BsnI GGCC 2 cut(s) 310, 670
BsoBI CYCGRG 1 cut(s) 88
Bsp120I GGGCCC 1 cut(s) 668
Bsp1286I GDGCHC 3 cut(s) 341, 661, 672
Bsp143I GATC 5 cut(s) 155, 172, 189, 529, 626
BspACI CCGC 1 cut(s) 124
BspANI GGCC 2 cut(s) 310, 670
BspCNI CTCAG 1 cut(s) 325
BspLI GGNNCC 3 cut(s) 21, 660, 670
BspMAI CTGCAG 2 cut(s) 155, 259
BspT107I GGYRCC 2 cut(s) 19, 658
BsrDI GCAATG 1 cut(s) 38
BssMI GATC 5 cut(s) 155, 172, 189, 529, 626
Bst2UI CCWGG 1 cut(s) 116
Bst4CI ACNGT 2 cut(s) 198, 281
BstC8I GCNNGC 1 cut(s) 407
BstDEI CTNAG 2 cut(s) 312, 373
BstF5I GGATG 2 cut(s) 407, 439
BstHHI GCGC 1 cut(s) 455
BstKTI GATC 5 cut(s) 158, 175, 192, 532, 629
BstMAI GTCTC 1 cut(s) 374
BstMBI GATC 5 cut(s) 155, 172, 189, 529, 626
BstMCI CGRYCG 1 cut(s) 200
BstMWI GCNNNNNNNGC 3 cut(s) 28, 120, 150
BstNI CCWGG 1 cut(s) 116
BstNSI RCATGY 2 cut(s) 109, 583
BstPAI GACNNNNGTC 1 cut(s) 199
BstSCI CCNGG 1 cut(s) 114
BstSFI CTRYAG 2 cut(s) 151, 255
BstSLI GKGCMC 2 cut(s) 661, 672
BsuRI GGCC 2 cut(s) 310, 670
BtsCI GGATG 2 cut(s) 407, 439
BtsI GCAGTG 1 cut(s) 252
BtsIMutI CAGTG 2 cut(s) 252, 286
Cac8I GCNNGC 1 cut(s) 407
CfoI GCGC 1 cut(s) 455
Cfr13I GGNCC 2 cut(s) 668, 669
Csp6I GTAC 2 cut(s) 109, 583
CviAII CATG 3 cut(s) 27, 106, 580
CviJI RGCY 6 cut(s) 31, 310, 316, 339, 409, 670
CviKI_1 RGCY 6 cut(s) 31, 310, 316, 339, 409, 670
CviQI GTAC 2 cut(s) 109, 583
DdeI CTNAG 2 cut(s) 312, 373
DpnI GATC 5 cut(s) 157, 174, 191, 531, 628
DpnII GATC 5 cut(s) 155, 172, 189, 529, 626
Ecl136II GAGCTC 1 cut(s) 339
Eco147I AGGCCT 1 cut(s) 310
Eco24I GRGCYC 2 cut(s) 341, 672
Eco32I GATATC 1 cut(s) 250
Eco53kI GAGCTC 1 cut(s) 339
Eco57I CTGAAG 1 cut(s) 433
Eco88I CYCGRG 1 cut(s) 88
EcoICRI GAGCTC 1 cut(s) 339
EcoO109I RGGNCCY 2 cut(s) 668, 669
EcoRI GAATTC 1 cut(s) 645
EcoRII CCWGG 1 cut(s) 114
EcoRV GATATC 1 cut(s) 250
EcoT38I GRGCYC 2 cut(s) 341, 672
FaeI CATG 3 cut(s) 30, 109, 583
FaiI YATR 6 cut(s) 28, 78, 107, 270, 345, 581
FaqI GGGAC 1 cut(s) 511
FatI CATG 3 cut(s) 26, 105, 579
Fnu4HI GCNGC 1 cut(s) 124
FokI GGATG 2 cut(s) 414, 446
FriOI GRGCYC 2 cut(s) 341, 672
Fsp4HI GCNGC 1 cut(s) 124
GlaI GCGC 1 cut(s) 454
GluI GCNGC 1 cut(s) 124
HaeIII GGCC 2 cut(s) 310, 670
HhaI GCGC 1 cut(s) 455
Hin1II CATG 3 cut(s) 30, 109, 583
Hin6I GCGC 1 cut(s) 453
HinP1I GCGC 1 cut(s) 453
HindIII AAGCTT 1 cut(s) 407
HinfI GANTC 2 cut(s) 35, 367
HphI GGTGA 3 cut(s) 167, 235, 476
Hpy188I TCNGA 4 cut(s) 189, 194, 237, 264
Hpy188III TCNNGA 4 cut(s) 209, 298, 624, 630
HpyAV CCTTC 6 cut(s) 33, 232, 461, 483, 488, 518
HpyCH4III ACNGT 2 cut(s) 198, 281
HpyCH4IV ACGT 2 cut(s) 129, 266
HpyCH4V TGCA 5 cut(s) 102, 153, 257, 405, 556
HpyF10VI GCNNNNNNNGC 3 cut(s) 28, 120, 150
HpyF3I CTNAG 2 cut(s) 312, 373
HpySE526I ACGT 2 cut(s) 129, 266
Hsp92II CATG 3 cut(s) 30, 109, 583
HspAI GCGC 1 cut(s) 453
Kzo9I GATC 5 cut(s) 155, 172, 189, 529, 626
LmnI GCTCC 1 cut(s) 336
LpnPI CCDG 2 cut(s) 101, 128
LweI GCATC 3 cut(s) 73, 392, 424
MaeII ACGT 2 cut(s) 129, 266
MalI GATC 5 cut(s) 157, 174, 191, 531, 628
MboI GATC 5 cut(s) 155, 172, 189, 529, 626
MboII GAAGA 6 cut(s) 49, 439, 495, 498, 645, 648
MhlI GDGCHC 3 cut(s) 341, 661, 672
MluCI AATT 4 cut(s) 183, 231, 533, 645
MlyI GAGTC 2 cut(s) 44, 376
MslI CAYNNNNRTG 3 cut(s) 81, 348, 400
MspR9I CCNGG 1 cut(s) 116
Mva1269I GAATGC 1 cut(s) 104
MvaI CCWGG 1 cut(s) 116
MwoI GCNNNNNNNGC 3 cut(s) 28, 120, 150
NdeII GATC 5 cut(s) 155, 172, 189, 529, 626
NlaIII CATG 3 cut(s) 30, 109, 583
NlaIV GGNNCC 3 cut(s) 21, 660, 670
NspI RCATGY 2 cut(s) 109, 583
PceI AGGCCT 1 cut(s) 310
PciI ACATGT 2 cut(s) 105, 579
PctI GAATGC 1 cut(s) 104
PkrI GCNGC 1 cut(s) 125
PleI GAGTC 2 cut(s) 43, 375
PpsI GAGTC 2 cut(s) 43, 375
PscI ACATGT 2 cut(s) 105, 579
PshAI GACNNNNGTC 1 cut(s) 199
Psp124BI GAGCTC 1 cut(s) 341
Psp1406I AACGTT 1 cut(s) 129
Psp6I CCWGG 1 cut(s) 114
PspGI CCWGG 1 cut(s) 114
PspN4I GGNNCC 3 cut(s) 21, 660, 670
PspOMI GGGCCC 1 cut(s) 668
PspPI GGNCC 2 cut(s) 668, 669
PstI CTGCAG 2 cut(s) 155, 259
RsaI GTAC 2 cut(s) 110, 584
RsaNI GTAC 2 cut(s) 109, 583
RseI CAYNNNNRTG 3 cut(s) 81, 348, 400
SacI GAGCTC 1 cut(s) 341
SatI GCNGC 1 cut(s) 124
Sau3AI GATC 5 cut(s) 155, 172, 189, 529, 626
Sau96I GGNCC 2 cut(s) 668, 669
SchI GAGTC 2 cut(s) 44, 376
ScrFI CCNGG 1 cut(s) 116
SduI GDGCHC 3 cut(s) 341, 661, 672
SetI ASST 7 cut(s) 132, 243, 269, 341, 411, 512, 664
SfaNI GCATC 3 cut(s) 73, 392, 424
SfcI CTRYAG 2 cut(s) 151, 255
SmiMI CAYNNNNRTG 3 cut(s) 81, 348, 400
SmlI CTYRAG 1 cut(s) 32
SmoI CTYRAG 1 cut(s) 32
Sse9I AATT 4 cut(s) 183, 231, 533, 645
SseBI AGGCCT 1 cut(s) 310
SsiI CCGC 1 cut(s) 124
SspI AATATT 1 cut(s) 620
SstI GAGCTC 1 cut(s) 341
StuI AGGCCT 1 cut(s) 310
StyD4I CCNGG 1 cut(s) 114
TaaI ACNGT 2 cut(s) 198, 281
TaiI ACGT 2 cut(s) 132, 269
TasI AATT 4 cut(s) 183, 231, 533, 645
TatI WGTACW 1 cut(s) 108
TauI GCSGC 1 cut(s) 126
TscAI CASTG 2 cut(s) 259, 286
TspDTI ATGAA 4 cut(s) 15, 17, 243, 384
TspRI CASTG 2 cut(s) 259, 286
XapI RAATTY 2 cut(s) 231, 645
XceI RCATGY 2 cut(s) 109, 583
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.