Rh3BG191500

PLATZ transcription factor

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr3B
OG0002320
Physical Location & Seq
Reverse (-)
16973518 .. 16976310
2793 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh3BG191500.1

Sequence Viewer

Length: 798 bp
ATGGCTTGTTTGCCCGTTTCCCCACTAACATTGTCACCTACATGTCTAAGTTTGCAGGTGCCAACAATAGCTGCACACACCAACATTACCACTACCACATTTCTCCAGATAACCCACTTGTGCAGCATTTTGAGCTTTGAGGAGAAAATGGACACAACAATGTTGATACCGCCATGGCTGGAGCAGTTGCTGACCTCGTCGTTCTTCACCATCTGCCGTACTCACGGCGACGCAGCCAGGAGTGAATGCAACATGTTCTGCTTGGACTGCGGTGGAGATGCATTTTGCTTCTACTGCCGCTCCTCCAGACACAAAGACCACCAAGTGATCCAGATAAGGAGGTCTTCTTACCATGATGTGGTGAGGGTTTCGGAGATACAAAAGGTTCTGGACATTAGTGGGGTTCAGACCTATGTGATAAACAGTGCCAGAGTTCTGTTCTTGAATGAGAGGCCTCAACCAAAAGCTGGAATCAAAGGAGTCCCCCACATTTGTGAAATCTGTAGCAGAGGCCTCTTGGACCCATTTCGATTCTGCTCTCTGGGTTGTAAGCTTGTGGGAATAAAGAGGAATGGGGATGCCAACTTTACATTGGAGGCAAGGAATGAAGAGGGAAATGGAAATGGAACAAGAGAAGGAATGATAACATCATCAACAACAAGGAGAGTGACAATGGGGGAGGAAGAGTTGCGTGAAGGCTCACAACAAGACATGTACCCGGACACGCCTCCACCACCTCCTTCTTCAACTACAAGGAGAAGGAAAGGCATTCCTCATAGGGCACCATTTGGGACCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
PLATZ

Protein Analysis

265

Amino Acids

29.5

Weight (kDa)

8.23

Isoelectric Point (pI)

65.45

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PLATZ PF04640 113 - 185 3.9e-30 PLATZ transcription factor
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 46
Acc36I ACCTGC 1 cut(s) 46
AccB1I GGYRCC 2 cut(s) 58, 781
AccB7I CCANNNNNTGG 2 cut(s) 358, 467
AccBSI CCGCTC 1 cut(s) 300
AciI CCGC 3 cut(s) 170, 270, 298
AclWI GGATC 1 cut(s) 322
AdeI CACNNNGTG 1 cut(s) 325
AfaI GTAC 2 cut(s) 220, 716
AfiI CCNNNNNNNGG 2 cut(s) 358, 467
AflIII ACRYGT 3 cut(s) 41, 252, 711
AgsI TTSAA 2 cut(s) 445, 747
AjnI CCWGG 1 cut(s) 236
AleI CACNNNNGTG 1 cut(s) 492
AluBI AGCT 4 cut(s) 71, 135, 467, 553
AluI AGCT 4 cut(s) 71, 135, 467, 553
AlwI GGATC 1 cut(s) 322
AlwNI CAGNNNCTG 1 cut(s) 190
AoxI GGCC 2 cut(s) 452, 511
ApeKI GCWGC 3 cut(s) 71, 123, 233
AspS9I GGNCC 2 cut(s) 520, 792
AsuC2I CCSGG 1 cut(s) 719
AsuHPI GGTGA 3 cut(s) 27, 199, 373
AvaII GGWCC 2 cut(s) 520, 792
BaeGI GKGCMC 1 cut(s) 784
BanI GGYRCC 2 cut(s) 58, 781
BbsI GAAGAC 1 cut(s) 336
BbvI GCAGC 3 cut(s) 58, 135, 245
BccI CCATC 1 cut(s) 218
BceAI ACGGC 2 cut(s) 201, 241
BciT130I CCWGG 1 cut(s) 238
BcnI CCSGG 1 cut(s) 719
BfmI CTRYAG 1 cut(s) 502
BfuAI ACCTGC 1 cut(s) 46
BisI GCNGC 4 cut(s) 72, 124, 234, 298
BlsI GCNGC 4 cut(s) 73, 125, 235, 299
Bme1390I CCNGG 2 cut(s) 238, 719
Bme18I GGWCC 2 cut(s) 520, 792
BmgT120I GGNCC 2 cut(s) 520, 792
BmiI GGNNCC 4 cut(s) 60, 522, 783, 793
BmrFI CCNGG 2 cut(s) 238, 719
BmsI GCATC 2 cut(s) 268, 568
BpiI GAAGAC 1 cut(s) 336
BpmI CTGGAG 3 cut(s) 89, 200, 289
BpuMI CCSGG 1 cut(s) 719
BsaJI CCNNGG 1 cut(s) 173
BsaXI ACNNNNNCTCC 4 cut(s) 284, 314, 671, 701
Bsc4I CCNNNNNNNGG 2 cut(s) 358, 467
BseBI CCWGG 1 cut(s) 238
BseDI CCNNGG 1 cut(s) 173
BseGI GGATG 1 cut(s) 583
BseLI CCNNNNNNNGG 2 cut(s) 358, 467
BseRI GAGGAG 2 cut(s) 155, 292
BseSI GKGCMC 1 cut(s) 784
BseXI GCAGC 3 cut(s) 58, 135, 245
BsgI GTGCAG 2 cut(s) 57, 142
BshFI GGCC 2 cut(s) 454, 513
BshNI GGYRCC 2 cut(s) 58, 781
BsiSI CCGG 1 cut(s) 719
BslFI GGGAC 1 cut(s) 467
BslI CCNNNNNNNGG 2 cut(s) 358, 467
BsmFI GGGAC 1 cut(s) 467
BsmI GAATGC 2 cut(s) 251, 768
BsnI GGCC 2 cut(s) 454, 513
Bsp1286I GDGCHC 1 cut(s) 784
Bsp143I GATC 1 cut(s) 327
Bsp19I CCATGG 1 cut(s) 173
BspACI CCGC 3 cut(s) 170, 270, 298
BspANI GGCC 2 cut(s) 454, 513
BspLI GGNNCC 4 cut(s) 60, 522, 783, 793
BspMI ACCTGC 1 cut(s) 46
BspPI GGATC 1 cut(s) 322
BspT107I GGYRCC 2 cut(s) 58, 781
BsrBI CCGCTC 1 cut(s) 300
BssECI CCNNGG 1 cut(s) 173
BssMI GATC 1 cut(s) 327
BssT1I CCWWGG 1 cut(s) 173
Bst2UI CCWGG 1 cut(s) 238
Bst4CI ACNGT 1 cut(s) 425
Bst6I CTCTTC 2 cut(s) 603, 678
BstDEI CTNAG 1 cut(s) 47
BstDSI CCRYGG 1 cut(s) 173
BstF5I GGATG 1 cut(s) 583
BstKTI GATC 1 cut(s) 330
BstMBI GATC 1 cut(s) 327
BstMWI GCNNNNNNNGC 3 cut(s) 132, 267, 294
BstNI CCWGG 1 cut(s) 238
BstNSI RCATGY 3 cut(s) 45, 256, 715
BstSCI CCNGG 2 cut(s) 236, 717
BstSFI CTRYAG 1 cut(s) 502
BstSLI GKGCMC 1 cut(s) 784
BstV1I GCAGC 3 cut(s) 58, 135, 245
BstV2I GAAGAC 1 cut(s) 336
BsuRI GGCC 2 cut(s) 454, 513
BtgI CCRYGG 1 cut(s) 173
BtsCI GGATG 1 cut(s) 583
BtsIMutI CAGTG 1 cut(s) 430
BveI ACCTGC 1 cut(s) 46
CaiI CAGNNNCTG 1 cut(s) 190
Cfr13I GGNCC 2 cut(s) 520, 792
CseI GACGC 1 cut(s) 239
Csp6I GTAC 2 cut(s) 219, 715
CspCI CAANNNNNGTGG 2 cut(s) 12, 47
CviAII CATG 5 cut(s) 42, 174, 253, 353, 712
CviQI GTAC 2 cut(s) 219, 715
DdeI CTNAG 1 cut(s) 47
DpnI GATC 1 cut(s) 329
DpnII GATC 1 cut(s) 327
DraIII CACNNNGTG 1 cut(s) 325
Eam1104I CTCTTC 2 cut(s) 603, 678
EarI CTCTTC 2 cut(s) 603, 678
Eco130I CCWWGG 1 cut(s) 173
Eco147I AGGCCT 2 cut(s) 454, 513
Eco47I GGWCC 2 cut(s) 520, 792
EcoO109I RGGNCCY 1 cut(s) 792
EcoRII CCWGG 1 cut(s) 236
EcoT14I CCWWGG 1 cut(s) 173
EcoT22I ATGCAT 1 cut(s) 283
ErhI CCWWGG 1 cut(s) 173
FaeI CATG 5 cut(s) 45, 177, 256, 356, 715
FaiI YATR 7 cut(s) 43, 175, 254, 354, 414, 713, 777
FalI AAGNNNNNCTT 2 cut(s) 328, 360
FaqI GGGAC 1 cut(s) 467
FatI CATG 5 cut(s) 41, 173, 252, 352, 711
Fnu4HI GCNGC 4 cut(s) 72, 124, 234, 298
FokI GGATG 1 cut(s) 590
Fsp4HI GCNGC 4 cut(s) 72, 124, 234, 298
GluI GCNGC 4 cut(s) 72, 124, 234, 298
GsuI CTGGAG 3 cut(s) 89, 200, 289
HaeIII GGCC 2 cut(s) 454, 513
HapII CCGG 1 cut(s) 719
HgaI GACGC 1 cut(s) 239
Hin1II CATG 5 cut(s) 45, 177, 256, 356, 715
HindIII AAGCTT 1 cut(s) 551
HinfI GANTC 3 cut(s) 471, 480, 531
HpaII CCGG 1 cut(s) 719
HphI GGTGA 3 cut(s) 27, 199, 373
Hpy188I TCNGA 2 cut(s) 373, 408
Hpy188III TCNNGA 5 cut(s) 106, 306, 331, 389, 442
Hpy99I CGWCG 2 cut(s) 202, 233
HpyAV CCTTC 4 cut(s) 629, 689, 750, 753
HpyCH4III ACNGT 1 cut(s) 425
HpyCH4V TGCA 5 cut(s) 55, 74, 123, 249, 281
HpyF10VI GCNNNNNNNGC 3 cut(s) 132, 267, 294
HpyF3I CTNAG 1 cut(s) 47
Hsp92II CATG 5 cut(s) 45, 177, 256, 356, 715
Kzo9I GATC 1 cut(s) 327
LmnI GCTCC 2 cut(s) 181, 305
Lsp1109I GCAGC 3 cut(s) 58, 135, 245
LweI GCATC 2 cut(s) 268, 568
MaeIII GTNAC 2 cut(s) 33, 667
MalI GATC 1 cut(s) 329
MbiI CCGCTC 1 cut(s) 300
MboI GATC 1 cut(s) 327
MboII GAAGA 5 cut(s) 196, 336, 620, 695, 735
MhlI GDGCHC 1 cut(s) 784
MlyI GAGTC 1 cut(s) 489
Mph1103I ATGCAT 1 cut(s) 283
MslI CAYNNNNRTG 3 cut(s) 40, 158, 492
MspI CCGG 1 cut(s) 719
MspR9I CCNGG 2 cut(s) 238, 719
Mva1269I GAATGC 2 cut(s) 251, 768
MvaI CCWGG 1 cut(s) 238
MwoI GCNNNNNNNGC 3 cut(s) 132, 267, 294
NciI CCSGG 1 cut(s) 719
NcoI CCATGG 1 cut(s) 173
NdeII GATC 1 cut(s) 327
NlaIII CATG 5 cut(s) 45, 177, 256, 356, 715
NlaIV GGNNCC 4 cut(s) 60, 522, 783, 793
NmuCI GTSAC 2 cut(s) 33, 667
NsiI ATGCAT 1 cut(s) 283
NspI RCATGY 3 cut(s) 45, 256, 715
OliI CACNNNNGTG 1 cut(s) 492
PaqCI CACCTGC 1 cut(s) 46
PceI AGGCCT 2 cut(s) 454, 513
PciI ACATGT 3 cut(s) 41, 252, 711
PctI GAATGC 2 cut(s) 251, 768
PfeI GAWTC 2 cut(s) 471, 531
PflFI GACNNNGTC 1 cut(s) 196
PflMI CCANNNNNTGG 2 cut(s) 358, 467
PkrI GCNGC 4 cut(s) 73, 125, 235, 299
PleI GAGTC 1 cut(s) 488
PpsI GAGTC 1 cut(s) 488
PpuMI RGGWCCY 1 cut(s) 792
PscI ACATGT 3 cut(s) 41, 252, 711
Psp5II RGGWCCY 1 cut(s) 792
Psp6I CCWGG 1 cut(s) 236
PspGI CCWGG 1 cut(s) 236
PspN4I GGNNCC 4 cut(s) 60, 522, 783, 793
PspPI GGNCC 2 cut(s) 520, 792
PspPPI RGGWCCY 1 cut(s) 792
PstNI CAGNNNCTG 1 cut(s) 190
PsyI GACNNNGTC 1 cut(s) 196
RsaI GTAC 2 cut(s) 220, 716
RsaNI GTAC 2 cut(s) 219, 715
RseI CAYNNNNRTG 3 cut(s) 40, 158, 492
SatI GCNGC 4 cut(s) 72, 124, 234, 298
Sau3AI GATC 1 cut(s) 327
Sau96I GGNCC 2 cut(s) 520, 792
SchI GAGTC 1 cut(s) 489
ScrFI CCNGG 2 cut(s) 238, 719
SduI GDGCHC 1 cut(s) 784
SfaNI GCATC 2 cut(s) 268, 568
SfcI CTRYAG 1 cut(s) 502
SinI GGWCC 2 cut(s) 520, 792
SmiMI CAYNNNNRTG 3 cut(s) 40, 158, 492
SseBI AGGCCT 2 cut(s) 454, 513
SsiI CCGC 3 cut(s) 170, 270, 298
StuI AGGCCT 2 cut(s) 454, 513
StyD4I CCNGG 2 cut(s) 236, 717
StyI CCWWGG 1 cut(s) 173
TaaI ACNGT 1 cut(s) 425
TaqI TCGA 1 cut(s) 529
TauI GCSGC 1 cut(s) 300
TfiI GAWTC 2 cut(s) 471, 531
TscAI CASTG 1 cut(s) 430
TseFI GTSAC 2 cut(s) 33, 667
TseI GCWGC 3 cut(s) 71, 123, 233
Tsp45I GTSAC 2 cut(s) 33, 667
TspDTI ATGAA 1 cut(s) 621
TspRI CASTG 1 cut(s) 430
Tth111I GACNNNGTC 1 cut(s) 196
Van91I CCANNNNNTGG 2 cut(s) 358, 467
VpaK11BI GGWCC 2 cut(s) 520, 792
XceI RCATGY 3 cut(s) 45, 256, 715
XcmI CCANNNNNNNNNTGG 1 cut(s) 589
Zsp2I ATGCAT 1 cut(s) 283
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.