FvH4_6g17200

PLATZ transcription factor

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb6
OG0002320
Physical Location & Seq
Reverse (-)
11177296 .. 11179185
1890 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_6g17200.t2

Sequence Viewer

Length: 648 bp
ATGGACACAACAATGTTGGTACCGCCATGGCTAGAGGAGTTGCTGACCTCGTCGTTCTTCACCATCTGCCGAACCCACGGCGACGCAGCCAGGAGTGAATGCAACATGTTCTGCTTGGACTGCGGTGGAGATGCATTTTGCTTCTACTGCAGGTCTTCCAGACACAAAGACCACCAAGTGATCCAGATAAGGAGGTCTTCTTACCATGATGTGGTGAGAGTTTCGGAGATACAGAAGGTTCTGGACATCAGTGGGGTTCAGACCTATGTGATAAACAGTGCCAGAGTTCTGTTCTTGAATGAGAGGCCTCAACCGAAAGCTGGAATCAAAGGAGTCCCCCACATTTGTGAAATCTGTAGCAGAGGCCTCTTGGACCCATTTCGATTCTGCTCTCTGGGTTGTAAGCTTGTGGGAATAAAGAGGAATGGGGATGCCAACTTTACATTGGAGGCAAGGAATGAAGAGGGAAATGGAAATGGAAGAAGAGAAGGGATAACATCATCAACAACAAGGAGAGTGACAATGGGGGAGGAAGAGTTGCGTGAAGGCTCACAACAAGACATGTACCCGGACACGCCTCCACCACCTCCTTCTTCAACTACAAGGAGAAGGAAAGGCATTCCTCATAGGGCACCATTTGGGACATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
PLATZ

Protein Analysis

216

Amino Acids

24.14

Weight (kDa)

8.56

Isoelectric Point (pI)

63.69

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PLATZ PF04640 60 - 132 2.5e-30 PLATZ transcription factor
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 141
Acc65I GGTACC 1 cut(s) 19
AccB1I GGYRCC 2 cut(s) 19, 631
AccB7I CCANNNNNTGG 1 cut(s) 211
AciI CCGC 2 cut(s) 23, 123
AclWI GGATC 1 cut(s) 175
AdeI CACNNNGTG 1 cut(s) 178
AfaI GTAC 2 cut(s) 21, 566
AfiI CCNNNNNNNGG 2 cut(s) 211, 320
AflIII ACRYGT 2 cut(s) 105, 561
AgsI TTSAA 2 cut(s) 298, 597
AjnI CCWGG 1 cut(s) 89
AleI CACNNNNGTG 1 cut(s) 345
AluBI AGCT 2 cut(s) 320, 406
AluI AGCT 2 cut(s) 320, 406
AlwI GGATC 1 cut(s) 175
AoxI GGCC 2 cut(s) 305, 364
ApeKI GCWGC 1 cut(s) 86
Asp718I GGTACC 1 cut(s) 19
AspS9I GGNCC 1 cut(s) 373
AsuC2I CCSGG 1 cut(s) 569
AsuHPI GGTGA 2 cut(s) 52, 226
AvaII GGWCC 1 cut(s) 373
BaeGI GKGCMC 1 cut(s) 634
BanI GGYRCC 2 cut(s) 19, 631
BbsI GAAGAC 2 cut(s) 147, 189
BbvI GCAGC 1 cut(s) 98
BccI CCATC 1 cut(s) 71
BceAI ACGGC 1 cut(s) 94
BciT130I CCWGG 1 cut(s) 91
BcnI CCSGG 1 cut(s) 569
BfaI CTAG 1 cut(s) 32
BfmI CTRYAG 2 cut(s) 148, 355
BfuAI ACCTGC 1 cut(s) 141
BisI GCNGC 1 cut(s) 87
BlsI GCNGC 1 cut(s) 88
Bme1390I CCNGG 2 cut(s) 91, 569
Bme18I GGWCC 1 cut(s) 373
BmgT120I GGNCC 1 cut(s) 373
BmiI GGNNCC 3 cut(s) 21, 375, 633
BmrFI CCNGG 2 cut(s) 91, 569
BmsI GCATC 2 cut(s) 121, 421
BpiI GAAGAC 2 cut(s) 147, 189
BpuMI CCSGG 1 cut(s) 569
BsaJI CCNNGG 2 cut(s) 26, 76
BsaXI ACNNNNNCTCC 2 cut(s) 521, 551
Bsc4I CCNNNNNNNGG 2 cut(s) 211, 320
BseBI CCWGG 1 cut(s) 91
BseDI CCNNGG 2 cut(s) 26, 76
BseGI GGATG 1 cut(s) 436
BseLI CCNNNNNNNGG 2 cut(s) 211, 320
BseRI GAGGAG 1 cut(s) 50
BseSI GKGCMC 1 cut(s) 634
BseXI GCAGC 1 cut(s) 98
BshFI GGCC 2 cut(s) 307, 366
BshNI GGYRCC 2 cut(s) 19, 631
BsiSI CCGG 1 cut(s) 569
BslFI GGGAC 1 cut(s) 320
BslI CCNNNNNNNGG 2 cut(s) 211, 320
BsmFI GGGAC 1 cut(s) 320
BsmI GAATGC 2 cut(s) 104, 618
BsnI GGCC 2 cut(s) 307, 366
Bsp1286I GDGCHC 1 cut(s) 634
Bsp143I GATC 1 cut(s) 180
Bsp19I CCATGG 1 cut(s) 26
BspACI CCGC 2 cut(s) 23, 123
BspANI GGCC 2 cut(s) 307, 366
BspLI GGNNCC 3 cut(s) 21, 375, 633
BspMAI CTGCAG 1 cut(s) 152
BspMI ACCTGC 1 cut(s) 141
BspPI GGATC 1 cut(s) 175
BspT107I GGYRCC 2 cut(s) 19, 631
BssECI CCNNGG 2 cut(s) 26, 76
BssMI GATC 1 cut(s) 180
BssT1I CCWWGG 1 cut(s) 26
Bst2UI CCWGG 1 cut(s) 91
Bst4CI ACNGT 1 cut(s) 278
Bst6I CTCTTC 3 cut(s) 456, 478, 528
BstDSI CCRYGG 2 cut(s) 26, 76
BstF5I GGATG 1 cut(s) 436
BstKTI GATC 1 cut(s) 183
BstMBI GATC 1 cut(s) 180
BstMWI GCNNNNNNNGC 2 cut(s) 120, 147
BstNI CCWGG 1 cut(s) 91
BstNSI RCATGY 2 cut(s) 109, 565
BstSCI CCNGG 2 cut(s) 89, 567
BstSFI CTRYAG 2 cut(s) 148, 355
BstSLI GKGCMC 1 cut(s) 634
BstV1I GCAGC 1 cut(s) 98
BstV2I GAAGAC 2 cut(s) 147, 189
BsuRI GGCC 2 cut(s) 307, 366
BtgI CCRYGG 2 cut(s) 26, 76
BtsCI GGATG 1 cut(s) 436
BtsIMutI CAGTG 2 cut(s) 256, 283
BveI ACCTGC 1 cut(s) 141
Cfr13I GGNCC 1 cut(s) 373
CseI GACGC 1 cut(s) 92
Csp6I GTAC 2 cut(s) 20, 565
CviAII CATG 4 cut(s) 27, 106, 206, 562
CviJI RGCY 7 cut(s) 31, 89, 307, 320, 366, 406, 549
CviKI_1 RGCY 7 cut(s) 31, 89, 307, 320, 366, 406, 549
CviQI GTAC 2 cut(s) 20, 565
DpnI GATC 1 cut(s) 182
DpnII GATC 1 cut(s) 180
DraIII CACNNNGTG 1 cut(s) 178
Eam1104I CTCTTC 3 cut(s) 456, 478, 528
EarI CTCTTC 3 cut(s) 456, 478, 528
Eco130I CCWWGG 1 cut(s) 26
Eco147I AGGCCT 2 cut(s) 307, 366
Eco47I GGWCC 1 cut(s) 373
EcoRII CCWGG 1 cut(s) 89
EcoT14I CCWWGG 1 cut(s) 26
EcoT22I ATGCAT 1 cut(s) 136
ErhI CCWWGG 1 cut(s) 26
FaeI CATG 4 cut(s) 30, 109, 209, 565
FaiI YATR 7 cut(s) 28, 107, 207, 267, 563, 627, 646
FalI AAGNNNNNCTT 2 cut(s) 181, 213
FaqI GGGAC 1 cut(s) 320
FatI CATG 4 cut(s) 26, 105, 205, 561
Fnu4HI GCNGC 1 cut(s) 87
FokI GGATG 1 cut(s) 443
Fsp4HI GCNGC 1 cut(s) 87
FspBI CTAG 1 cut(s) 32
GluI GCNGC 1 cut(s) 87
HaeIII GGCC 2 cut(s) 307, 366
HapII CCGG 1 cut(s) 569
HgaI GACGC 1 cut(s) 92
Hin1II CATG 4 cut(s) 30, 109, 209, 565
HindIII AAGCTT 1 cut(s) 404
HinfI GANTC 3 cut(s) 324, 333, 384
HpaII CCGG 1 cut(s) 569
HphI GGTGA 2 cut(s) 52, 226
Hpy188I TCNGA 2 cut(s) 226, 261
Hpy188III TCNNGA 4 cut(s) 159, 184, 242, 295
Hpy99I CGWCG 2 cut(s) 55, 86
HpyAV CCTTC 5 cut(s) 229, 482, 539, 600, 603
HpyCH4III ACNGT 1 cut(s) 278
HpyCH4V TGCA 3 cut(s) 102, 134, 150
HpyF10VI GCNNNNNNNGC 2 cut(s) 120, 147
Hsp92II CATG 4 cut(s) 30, 109, 209, 565
KpnI GGTACC 1 cut(s) 23
Kzo9I GATC 1 cut(s) 180
Lsp1109I GCAGC 1 cut(s) 98
LweI GCATC 2 cut(s) 121, 421
MaeI CTAG 1 cut(s) 32
MaeIII GTNAC 1 cut(s) 517
MalI GATC 1 cut(s) 182
MboI GATC 1 cut(s) 180
MboII GAAGA 8 cut(s) 49, 147, 189, 473, 492, 495, 545, 585
MhlI GDGCHC 1 cut(s) 634
MlyI GAGTC 1 cut(s) 342
Mph1103I ATGCAT 1 cut(s) 136
MslI CAYNNNNRTG 2 cut(s) 11, 345
MspI CCGG 1 cut(s) 569
MspR9I CCNGG 2 cut(s) 91, 569
Mva1269I GAATGC 2 cut(s) 104, 618
MvaI CCWGG 1 cut(s) 91
MwoI GCNNNNNNNGC 2 cut(s) 120, 147
NciI CCSGG 1 cut(s) 569
NcoI CCATGG 1 cut(s) 26
NdeII GATC 1 cut(s) 180
NlaIII CATG 4 cut(s) 30, 109, 209, 565
NlaIV GGNNCC 3 cut(s) 21, 375, 633
NmuCI GTSAC 1 cut(s) 517
NsiI ATGCAT 1 cut(s) 136
NspI RCATGY 2 cut(s) 109, 565
OliI CACNNNNGTG 1 cut(s) 345
PceI AGGCCT 2 cut(s) 307, 366
PciI ACATGT 2 cut(s) 105, 561
PctI GAATGC 2 cut(s) 104, 618
PfeI GAWTC 2 cut(s) 324, 384
PflFI GACNNNGTC 1 cut(s) 49
PflMI CCANNNNNTGG 1 cut(s) 211
PkrI GCNGC 1 cut(s) 88
PleI GAGTC 1 cut(s) 341
PpsI GAGTC 1 cut(s) 341
PscI ACATGT 2 cut(s) 105, 561
Psp6I CCWGG 1 cut(s) 89
PspGI CCWGG 1 cut(s) 89
PspN4I GGNNCC 3 cut(s) 21, 375, 633
PspPI GGNCC 1 cut(s) 373
PstI CTGCAG 1 cut(s) 152
PsyI GACNNNGTC 1 cut(s) 49
RsaI GTAC 2 cut(s) 21, 566
RsaNI GTAC 2 cut(s) 20, 565
RseI CAYNNNNRTG 2 cut(s) 11, 345
SatI GCNGC 1 cut(s) 87
Sau3AI GATC 1 cut(s) 180
Sau96I GGNCC 1 cut(s) 373
SchI GAGTC 1 cut(s) 342
ScrFI CCNGG 2 cut(s) 91, 569
SduI GDGCHC 1 cut(s) 634
SetI ASST 8 cut(s) 50, 155, 197, 240, 266, 322, 408, 589
SfaNI GCATC 2 cut(s) 121, 421
SfcI CTRYAG 2 cut(s) 148, 355
SinI GGWCC 1 cut(s) 373
SmiMI CAYNNNNRTG 2 cut(s) 11, 345
SseBI AGGCCT 2 cut(s) 307, 366
SsiI CCGC 2 cut(s) 23, 123
SspMI CTAG 1 cut(s) 32
StuI AGGCCT 2 cut(s) 307, 366
StyD4I CCNGG 2 cut(s) 89, 567
StyI CCWWGG 1 cut(s) 26
TaaI ACNGT 1 cut(s) 278
TaqI TCGA 1 cut(s) 382
TfiI GAWTC 2 cut(s) 324, 384
TscAI CASTG 2 cut(s) 256, 283
TseFI GTSAC 1 cut(s) 517
TseI GCWGC 1 cut(s) 86
Tsp45I GTSAC 1 cut(s) 517
TspDTI ATGAA 1 cut(s) 474
TspRI CASTG 2 cut(s) 256, 283
Tth111I GACNNNGTC 1 cut(s) 49
Van91I CCANNNNNTGG 1 cut(s) 211
VpaK11BI GGWCC 1 cut(s) 373
XceI RCATGY 2 cut(s) 109, 565
XcmI CCANNNNNNNNNTGG 1 cut(s) 442
XspI CTAG 1 cut(s) 32
Zsp2I ATGCAT 1 cut(s) 136
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.