RchiOBHm_Chr5g0056371

PLATZ transcription factor

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
5
OG0002320
Physical Location & Seq
Forward (+)
60022154 .. 60024342
2189 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ33327

Sequence Viewer

Length: 696 bp
ATGGAGGAGGAGATGTTGGTGCCTTCATGGCTCGAGTCATTGTTATCCACAGCCTTCTTCTCCATCTGCCCAGCACACAGAGATGCCCCGAGAAGCGAATGCAACATGTACTGCCTGGATTGCCACAACGGGGCGTTTTGCTTTTACTGCAGATCATCAAGGCACAAAGATCACCAAGTAATTCAGATCAGACGGTCGTCGTATCACGACGTTGTTAGGGTGAATGAAATTCAGAAGGTTTTGGATATCACTGGAGTTCAGACGTATGTGATAAACAGTGCGAGAGTGCTGTTCTTGAATGAGAGGCCTCAGCCCAAAACTGCTGTCAAAGGGAGCTCACATATCTGTGAAATCTGTGGGAGGAGTCTCTTGGACCCTTTTCGGTTTTGTTCATTGGGATGCAAGCTTGTAGGACTAAAGAAGAATGGGGATGCGAGCTTTATCTTCAGCGCGAAGAATGGGGATGCGAGCTTTATCTTGAAGACTGGTGAAGAGAATGAGGAGGGAAGAAGGGAAGGGATAGCAATAAGGTTGCTATCAAAAGAAAGAGATCATCAAGAGCAATTTCCTAGTGAAGCAACAATGCAACATCCACAAGAAGAACAAGACATGTACCAAAGCACTCCTCCTCCACCCCAATATTCAAGATCAAGAAGAAGAAAGGGCATTCCTCATAGGGCACCTTTAGGGCCCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
PLATZ

Protein Analysis

231

Amino Acids

26.34

Weight (kDa)

8.32

Isoelectric Point (pI)

71.09

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PLATZ PF04640 64 - 136 4.3e-31 PLATZ transcription factor
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 2 cut(s) 19, 679
AccII CGCG 1 cut(s) 452
AcsI RAATTY 1 cut(s) 228
AcuI CTGAAG 1 cut(s) 430
AfaI GTAC 2 cut(s) 110, 614
AfiI CCNNNNNNNGG 1 cut(s) 130
AflIII ACRYGT 2 cut(s) 105, 609
AgsI TTSAA 3 cut(s) 298, 481, 645
AjnI CCWGG 1 cut(s) 114
AluBI AGCT 4 cut(s) 336, 406, 438, 471
AluI AGCT 4 cut(s) 336, 406, 438, 471
Alw21I GWGCWC 1 cut(s) 338
Alw26I GTCTC 1 cut(s) 371
Ama87I CYCGRG 2 cut(s) 32, 88
AoxI GGCC 2 cut(s) 305, 689
ApaI GGGCCC 1 cut(s) 693
ApoI RAATTY 1 cut(s) 228
ArsI GACNNNNNNTTYG 2 cut(s) 309, 341
AspLEI GCGC 1 cut(s) 452
AspS9I GGNCC 3 cut(s) 373, 689, 690
AsuHPI GGTGA 3 cut(s) 164, 232, 500
AvaI CYCGRG 2 cut(s) 32, 88
AvaII GGWCC 1 cut(s) 373
BaeGI GKGCMC 2 cut(s) 682, 693
BanI GGYRCC 2 cut(s) 19, 679
BanII GRGCYC 2 cut(s) 338, 693
BbsI GAAGAC 1 cut(s) 488
Bbv12I GWGCWC 1 cut(s) 338
BbvCI CCTCAGC 1 cut(s) 309
BccI CCATC 1 cut(s) 71
BciT130I CCWGG 1 cut(s) 116
BcoDI GTCTC 1 cut(s) 371
BfaI CTAG 1 cut(s) 570
BfmI CTRYAG 1 cut(s) 148
BglI GCCNNNNNGGC 1 cut(s) 28
Bme1390I CCNGG 1 cut(s) 116
Bme18I GGWCC 1 cut(s) 373
BmeT110I CYCGRG 2 cut(s) 32, 88
BmgT120I GGNCC 3 cut(s) 373, 689, 690
BmiI GGNNCC 4 cut(s) 21, 375, 681, 691
BmrFI CCNGG 1 cut(s) 116
BmsI GCATC 4 cut(s) 73, 389, 421, 454
BoxI GACNNNNGTC 1 cut(s) 196
BpiI GAAGAC 1 cut(s) 488
BpmI CTGGAG 1 cut(s) 273
Bpu10I CCTNAGC 1 cut(s) 309
BsaXI ACNNNNNCTCC 3 cut(s) 29, 613, 643
Bsc4I CCNNNNNNNGG 1 cut(s) 130
Bse1I ACTGG 2 cut(s) 256, 490
BseBI CCWGG 1 cut(s) 116
BseGI GGATG 4 cut(s) 404, 436, 469, 589
BseLI CCNNNNNNNGG 1 cut(s) 130
BseMII CTCAG 1 cut(s) 323
BseNI ACTGG 2 cut(s) 256, 490
BseRI GAGGAG 6 cut(s) 20, 23, 376, 515, 615, 618
BseSI GKGCMC 2 cut(s) 682, 693
BseYI CCCAGC 1 cut(s) 70
Bsh1236I CGCG 1 cut(s) 452
Bsh1285I CGRYCG 1 cut(s) 197
BshFI GGCC 2 cut(s) 307, 691
BshNI GGYRCC 2 cut(s) 19, 679
BsiEI CGRYCG 1 cut(s) 197
BsiHKAI GWGCWC 1 cut(s) 338
BsiHKCI CYCGRG 2 cut(s) 32, 88
BslI CCNNNNNNNGG 1 cut(s) 130
BsmAI GTCTC 1 cut(s) 371
BsmI GAATGC 2 cut(s) 104, 666
BsnI GGCC 2 cut(s) 307, 691
BsoBI CYCGRG 2 cut(s) 32, 88
Bsp120I GGGCCC 1 cut(s) 689
Bsp1286I GDGCHC 3 cut(s) 338, 682, 693
Bsp143I GATC 5 cut(s) 152, 169, 186, 550, 647
BspANI GGCC 2 cut(s) 307, 691
BspCNI CTCAG 1 cut(s) 322
BspFNI CGCG 1 cut(s) 452
BspLI GGNNCC 4 cut(s) 21, 375, 681, 691
BspMAI CTGCAG 1 cut(s) 152
BspT107I GGYRCC 2 cut(s) 19, 679
BsrI ACTGG 2 cut(s) 256, 490
BssMI GATC 5 cut(s) 152, 169, 186, 550, 647
Bst2UI CCWGG 1 cut(s) 116
Bst4CI ACNGT 2 cut(s) 195, 278
Bst6I CTCTTC 1 cut(s) 486
BstC8I GCNNGC 3 cut(s) 404, 436, 469
BstDEI CTNAG 1 cut(s) 309
BstF5I GGATG 4 cut(s) 404, 436, 469, 589
BstFNI CGCG 1 cut(s) 452
BstHHI GCGC 1 cut(s) 452
BstKTI GATC 5 cut(s) 155, 172, 189, 553, 650
BstMAI GTCTC 1 cut(s) 371
BstMBI GATC 5 cut(s) 152, 169, 186, 550, 647
BstMCI CGRYCG 1 cut(s) 197
BstMWI GCNNNNNNNGC 3 cut(s) 28, 120, 147
BstNI CCWGG 1 cut(s) 116
BstNSI RCATGY 2 cut(s) 109, 613
BstPAI GACNNNNGTC 1 cut(s) 196
BstSCI CCNGG 1 cut(s) 114
BstSFI CTRYAG 1 cut(s) 148
BstSLI GKGCMC 2 cut(s) 682, 693
BstUI CGCG 1 cut(s) 452
BstV2I GAAGAC 1 cut(s) 488
BsuRI GGCC 2 cut(s) 307, 691
BtsCI GGATG 4 cut(s) 404, 436, 469, 589
BtsIMutI CAGTG 2 cut(s) 249, 283
Cac8I GCNNGC 3 cut(s) 404, 436, 469
CfoI GCGC 1 cut(s) 452
Cfr13I GGNCC 3 cut(s) 373, 689, 690
Csp6I GTAC 2 cut(s) 109, 613
CviAII CATG 3 cut(s) 27, 106, 610
CviJI RGCY 9 cut(s) 31, 53, 307, 313, 336, 406, 438, 471, 691
CviKI_1 RGCY 9 cut(s) 31, 53, 307, 313, 336, 406, 438, 471, 691
CviQI GTAC 2 cut(s) 109, 613
DdeI CTNAG 1 cut(s) 309
DpnI GATC 5 cut(s) 154, 171, 188, 552, 649
DpnII GATC 5 cut(s) 152, 169, 186, 550, 647
Eam1104I CTCTTC 1 cut(s) 486
EarI CTCTTC 1 cut(s) 486
Ecl136II GAGCTC 1 cut(s) 336
Eco147I AGGCCT 1 cut(s) 307
Eco24I GRGCYC 2 cut(s) 338, 693
Eco32I GATATC 1 cut(s) 247
Eco47I GGWCC 1 cut(s) 373
Eco53kI GAGCTC 1 cut(s) 336
Eco57I CTGAAG 1 cut(s) 430
Eco88I CYCGRG 2 cut(s) 32, 88
EcoICRI GAGCTC 1 cut(s) 336
EcoO109I RGGNCCY 2 cut(s) 689, 690
EcoRII CCWGG 1 cut(s) 114
EcoRV GATATC 1 cut(s) 247
EcoT38I GRGCYC 2 cut(s) 338, 693
FaeI CATG 3 cut(s) 30, 109, 613
FaiI YATR 6 cut(s) 28, 107, 267, 342, 611, 675
FatI CATG 3 cut(s) 26, 105, 609
FokI GGATG 4 cut(s) 411, 443, 476, 576
FriOI GRGCYC 2 cut(s) 338, 693
FspBI CTAG 1 cut(s) 570
GlaI GCGC 1 cut(s) 451
GsaI CCCAGC 1 cut(s) 74
GsuI CTGGAG 1 cut(s) 273
HaeIII GGCC 2 cut(s) 307, 691
HhaI GCGC 1 cut(s) 452
Hin1II CATG 3 cut(s) 30, 109, 613
Hin6I GCGC 1 cut(s) 450
HinP1I GCGC 1 cut(s) 450
HindIII AAGCTT 1 cut(s) 404
HinfI GANTC 2 cut(s) 35, 364
HphI GGTGA 3 cut(s) 164, 232, 500
Hpy188I TCNGA 4 cut(s) 186, 191, 234, 261
Hpy188III TCNNGA 6 cut(s) 206, 295, 478, 557, 645, 651
Hpy99I CGWCG 2 cut(s) 202, 212
HpyAV CCTTC 5 cut(s) 33, 64, 229, 504, 509
HpyCH4III ACNGT 2 cut(s) 195, 278
HpyCH4IV ACGT 2 cut(s) 210, 263
HpyCH4V TGCA 4 cut(s) 102, 150, 402, 586
HpyF10VI GCNNNNNNNGC 3 cut(s) 28, 120, 147
HpyF3I CTNAG 1 cut(s) 309
HpySE526I ACGT 2 cut(s) 210, 263
Hsp92II CATG 3 cut(s) 30, 109, 613
HspAI GCGC 1 cut(s) 450
Kzo9I GATC 5 cut(s) 152, 169, 186, 550, 647
LmnI GCTCC 1 cut(s) 333
LpnPI CCDG 5 cut(s) 84, 101, 128, 237, 471
LweI GCATC 4 cut(s) 73, 389, 421, 454
MaeI CTAG 1 cut(s) 570
MaeII ACGT 2 cut(s) 210, 263
MalI GATC 5 cut(s) 154, 171, 188, 552, 649
MboI GATC 5 cut(s) 152, 169, 186, 550, 647
MhlI GDGCHC 3 cut(s) 338, 682, 693
MluCI AATT 3 cut(s) 180, 228, 563
MlyI GAGTC 2 cut(s) 44, 373
MnlI CCTC 8 cut(s) 297, 318, 354, 493, 496, 636, 639, 681
MslI CAYNNNNRTG 3 cut(s) 81, 345, 397
MspR9I CCNGG 1 cut(s) 116
Mva1269I GAATGC 2 cut(s) 104, 666
MvaI CCWGG 1 cut(s) 116
MvnI CGCG 1 cut(s) 452
MwoI GCNNNNNNNGC 3 cut(s) 28, 120, 147
NdeII GATC 5 cut(s) 152, 169, 186, 550, 647
NlaIII CATG 3 cut(s) 30, 109, 613
NlaIV GGNNCC 4 cut(s) 21, 375, 681, 691
NspI RCATGY 2 cut(s) 109, 613
PaeR7I CTCGAG 1 cut(s) 32
PceI AGGCCT 1 cut(s) 307
PciI ACATGT 2 cut(s) 105, 609
PctI GAATGC 2 cut(s) 104, 666
PleI GAGTC 2 cut(s) 43, 372
PpsI GAGTC 2 cut(s) 43, 372
PscI ACATGT 2 cut(s) 105, 609
PshAI GACNNNNGTC 1 cut(s) 196
Psp124BI GAGCTC 1 cut(s) 338
Psp6I CCWGG 1 cut(s) 114
PspFI CCCAGC 1 cut(s) 70
PspGI CCWGG 1 cut(s) 114
PspN4I GGNNCC 4 cut(s) 21, 375, 681, 691
PspOMI GGGCCC 1 cut(s) 689
PspPI GGNCC 3 cut(s) 373, 689, 690
PspXI VCTCGAGB 1 cut(s) 32
PstI CTGCAG 1 cut(s) 152
RsaI GTAC 2 cut(s) 110, 614
RsaNI GTAC 2 cut(s) 109, 613
RseI CAYNNNNRTG 3 cut(s) 81, 345, 397
SacI GAGCTC 1 cut(s) 338
Sau3AI GATC 5 cut(s) 152, 169, 186, 550, 647
Sau96I GGNCC 3 cut(s) 373, 689, 690
SchI GAGTC 2 cut(s) 44, 373
ScrFI CCNGG 1 cut(s) 116
SduI GDGCHC 3 cut(s) 338, 682, 693
SetI ASST 9 cut(s) 213, 240, 266, 338, 408, 440, 473, 533, 685
SfaNI GCATC 4 cut(s) 73, 389, 421, 454
SfcI CTRYAG 1 cut(s) 148
Sfr274I CTCGAG 1 cut(s) 32
SinI GGWCC 1 cut(s) 373
SlaI CTCGAG 1 cut(s) 32
SmiMI CAYNNNNRTG 3 cut(s) 81, 345, 397
SmlI CTYRAG 1 cut(s) 32
SmoI CTYRAG 1 cut(s) 32
Sse9I AATT 3 cut(s) 180, 228, 563
SseBI AGGCCT 1 cut(s) 307
SspI AATATT 1 cut(s) 641
SspMI CTAG 1 cut(s) 570
SstI GAGCTC 1 cut(s) 338
StuI AGGCCT 1 cut(s) 307
StyD4I CCNGG 1 cut(s) 114
TaaI ACNGT 2 cut(s) 195, 278
TaiI ACGT 2 cut(s) 213, 266
TaqI TCGA 1 cut(s) 33
TasI AATT 3 cut(s) 180, 228, 563
TatI WGTACW 1 cut(s) 108
TscAI CASTG 2 cut(s) 256, 283
TspDTI ATGAA 3 cut(s) 15, 240, 381
TspRI CASTG 2 cut(s) 256, 283
VpaK11BI GGWCC 1 cut(s) 373
XapI RAATTY 1 cut(s) 228
XceI RCATGY 2 cut(s) 109, 613
XhoI CTCGAG 1 cut(s) 32
XspI CTAG 1 cut(s) 570
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.