MD11G1151300.v1.1

PLATZ transcription factor

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr11
OG0002320
Physical Location & Seq
Reverse (-)
14379334 .. 14380837
1504 bp
Loading structure...
UTR
Exon/CDS
Intron
MD11G1151300.v1.1.491

Sequence Viewer

Length: 639 bp
ATGTTGGTACCTTCGTGGCTTGAATCATTGTTGTCGACGGCCTTCTTCTCCATCTGCCGGTGGCACAAAGATGGTCCGAGAGGCGAATGCAACATGTACTGCTTAGATTGCAACAATGGCGCATTCTGCTCTTATTGTAAATCATCAAGACACAAAGATCACCAAGTAATTCAGATCAGACGGTCGTCGTATCACGATGTTGTGAGGGTGTCTGAGATTCAGAAGGTGTTAGACATCAGCGGAGTTCAGACTTATGTGATAAACAGTGCGAGAGTGTTGTTTCTTAACCAGAGGCCTCAGCCTAAAACAGCCGTTAAGGGGGGCTCACATATCTGTGAAATATGTGCGAGATGTCTCTGGGATCCTGTTCGTTTTTGTTCATTGGGATGCAAGCTTGAGGGACTAAAGAAGAAGGGGGAAGCCAGCTATATCTTGAGCGCAAAGAAAGAAGAAGAGGAGGGAAGAAAGGAAGGTAAACAAAGAAGGTTACCATCAGAAGAATTATTAGAAGATCAATTGCGTGAAGGAATGCAACAAGAAATGTACCAAAGCACTCCAACTCCAACTCCACCACCTCATTCAGATGCAAGGAAAAGGAGAAGAAAGGGCATACCGCATAGAGCACCTTTAAGGCCTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
PLATZ

Protein Analysis

213

Amino Acids

24.31

Weight (kDa)

9.3

Isoelectric Point (pI)

68.23

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PLATZ PF04640 60 - 132 8.6e-30 PLATZ transcription factor
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 7
AccB1I GGYRCC 1 cut(s) 7
AccI GTMKAC 1 cut(s) 35
AciI CCGC 2 cut(s) 240, 614
AclWI GGATC 2 cut(s) 356, 369
AfaI GTAC 3 cut(s) 9, 98, 545
AfiI CCNNNNNNNGG 2 cut(s) 57, 318
AflIII ACRYGT 1 cut(s) 93
AgsI TTSAA 1 cut(s) 23
AluBI AGCT 2 cut(s) 394, 426
AluI AGCT 2 cut(s) 394, 426
Alw21I GWGCWC 1 cut(s) 625
Alw26I GTCTC 1 cut(s) 359
AlwI GGATC 2 cut(s) 356, 369
AoxI GGCC 3 cut(s) 39, 293, 632
Asp718I GGTACC 1 cut(s) 7
AspLEI GCGC 2 cut(s) 122, 440
AspS9I GGNCC 1 cut(s) 74
AsuHPI GGTGA 1 cut(s) 152
AvaII GGWCC 1 cut(s) 74
BaeI ACNNNNGTAYC 1 cut(s) 32
BamHI GGATCC 1 cut(s) 361
BanI GGYRCC 1 cut(s) 7
BanII GRGCYC 1 cut(s) 326
Bbv12I GWGCWC 1 cut(s) 625
BbvCI CCTCAGC 1 cut(s) 297
BccI CCATC 3 cut(s) 59, 65, 499
BceAI ACGGC 2 cut(s) 54, 296
BcoDI GTCTC 1 cut(s) 359
Bme18I GGWCC 1 cut(s) 74
BmgT120I GGNCC 1 cut(s) 74
BmiI GGNNCC 2 cut(s) 9, 363
BmsI GCATC 2 cut(s) 377, 574
BoxI GACNNNNGTC 1 cut(s) 184
Bpu10I CCTNAGC 1 cut(s) 297
BpuEI CTTGAG 2 cut(s) 416, 454
BsaXI ACNNNNNCTCC 4 cut(s) 544, 550, 574, 580
Bsc4I CCNNNNNNNGG 2 cut(s) 57, 318
Bse118I RCCGGY 1 cut(s) 57
BseGI GGATG 1 cut(s) 392
BseLI CCNNNNNNNGG 2 cut(s) 57, 318
BseMII CTCAG 2 cut(s) 204, 311
BseRI GAGGAG 1 cut(s) 470
Bsh1285I CGRYCG 1 cut(s) 185
BshFI GGCC 3 cut(s) 41, 295, 634
BshNI GGYRCC 1 cut(s) 7
BsiEI CGRYCG 1 cut(s) 185
BsiHKAI GWGCWC 1 cut(s) 625
BsiSI CCGG 1 cut(s) 58
BslFI GGGAC 1 cut(s) 414
BslI CCNNNNNNNGG 2 cut(s) 57, 318
BsmAI GTCTC 1 cut(s) 359
BsmFI GGGAC 1 cut(s) 414
BsmI GAATGC 3 cut(s) 92, 122, 534
BsnI GGCC 3 cut(s) 41, 295, 634
Bsp1286I GDGCHC 2 cut(s) 326, 625
Bsp143I GATC 4 cut(s) 157, 174, 361, 511
BspACI CCGC 2 cut(s) 240, 614
BspANI GGCC 3 cut(s) 41, 295, 634
BspCNI CTCAG 2 cut(s) 205, 310
BspLI GGNNCC 2 cut(s) 9, 363
BspPI GGATC 2 cut(s) 356, 369
BspT107I GGYRCC 1 cut(s) 7
BsrFI RCCGGY 1 cut(s) 57
BssAI RCCGGY 1 cut(s) 57
BssMI GATC 4 cut(s) 157, 174, 361, 511
Bst4CI ACNGT 2 cut(s) 183, 266
Bst6I CTCTTC 1 cut(s) 447
BstC8I GCNNGC 2 cut(s) 392, 424
BstDEI CTNAG 3 cut(s) 103, 213, 297
BstEII GGTNACC 1 cut(s) 486
BstF5I GGATG 1 cut(s) 392
BstHHI GCGC 2 cut(s) 122, 440
BstKTI GATC 4 cut(s) 160, 177, 364, 514
BstMAI GTCTC 1 cut(s) 359
BstMBI GATC 4 cut(s) 157, 174, 361, 511
BstMCI CGRYCG 1 cut(s) 185
BstMWI GCNNNNNNNGC 3 cut(s) 108, 117, 126
BstNSI RCATGY 1 cut(s) 97
BstPAI GACNNNNGTC 1 cut(s) 184
BstPI GGTNACC 1 cut(s) 486
BstX2I RGATCY 1 cut(s) 361
BstYI RGATCY 1 cut(s) 361
BsuRI GGCC 3 cut(s) 41, 295, 634
BtsCI GGATG 1 cut(s) 392
BtsIMutI CAGTG 1 cut(s) 271
Cac8I GCNNGC 2 cut(s) 392, 424
CfoI GCGC 2 cut(s) 122, 440
Cfr10I RCCGGY 1 cut(s) 57
Cfr13I GGNCC 1 cut(s) 74
Csp6I GTAC 3 cut(s) 8, 97, 544
CviAII CATG 1 cut(s) 94
CviQI GTAC 3 cut(s) 8, 97, 544
DdeI CTNAG 3 cut(s) 103, 213, 297
DpnI GATC 4 cut(s) 159, 176, 363, 513
DpnII GATC 4 cut(s) 157, 174, 361, 511
Eam1104I CTCTTC 1 cut(s) 447
EarI CTCTTC 1 cut(s) 447
Eco147I AGGCCT 2 cut(s) 295, 634
Eco24I GRGCYC 1 cut(s) 326
Eco47I GGWCC 1 cut(s) 74
Eco91I GGTNACC 1 cut(s) 486
EcoO65I GGTNACC 1 cut(s) 486
EcoT38I GRGCYC 1 cut(s) 326
FaeI CATG 1 cut(s) 97
FaiI YATR 7 cut(s) 95, 255, 330, 343, 429, 611, 618
FaqI GGGAC 1 cut(s) 414
FatI CATG 1 cut(s) 93
FblI GTMKAC 1 cut(s) 35
FokI GGATG 1 cut(s) 399
FriOI GRGCYC 1 cut(s) 326
GlaI GCGC 2 cut(s) 121, 439
HaeIII GGCC 3 cut(s) 41, 295, 634
HapII CCGG 1 cut(s) 58
HhaI GCGC 2 cut(s) 122, 440
Hin1II CATG 1 cut(s) 97
Hin6I GCGC 2 cut(s) 120, 438
HinP1I GCGC 2 cut(s) 120, 438
HincII GTYRAC 1 cut(s) 36
HindII GTYRAC 1 cut(s) 36
HindIII AAGCTT 1 cut(s) 392
HinfI GANTC 2 cut(s) 23, 217
HpaII CCGG 1 cut(s) 58
HphI GGTGA 1 cut(s) 152
Hpy166II GTNNAC 2 cut(s) 36, 476
Hpy188I TCNGA 8 cut(s) 78, 174, 179, 214, 222, 249, 496, 583
Hpy188III TCNNGA 3 cut(s) 147, 194, 433
Hpy8I GTNNAC 2 cut(s) 36, 476
Hpy99I CGWCG 2 cut(s) 40, 190
HpyAV CCTTC 7 cut(s) 21, 52, 217, 406, 464, 477, 518
HpyCH4III ACNGT 2 cut(s) 183, 266
HpyCH4V TGCA 5 cut(s) 90, 111, 390, 532, 587
HpyF10VI GCNNNNNNNGC 3 cut(s) 108, 117, 126
HpyF3I CTNAG 3 cut(s) 103, 213, 297
Hsp92II CATG 1 cut(s) 97
HspAI GCGC 2 cut(s) 120, 438
KpnI GGTACC 1 cut(s) 11
Kzo9I GATC 4 cut(s) 157, 174, 361, 511
LpnPI CCDG 5 cut(s) 71, 302, 343, 378, 436
LweI GCATC 2 cut(s) 377, 574
MaeIII GTNAC 1 cut(s) 486
MalI GATC 4 cut(s) 159, 176, 363, 513
MboI GATC 4 cut(s) 157, 174, 361, 511
MboII GAAGA 8 cut(s) 37, 421, 461, 464, 474, 509, 521, 612
MfeI CAATTG 1 cut(s) 515
MflI RGATCY 1 cut(s) 361
MhlI GDGCHC 2 cut(s) 326, 625
MluCI AATT 3 cut(s) 168, 500, 515
MmeI TCCRAC 2 cut(s) 581, 587
MnlI CCTC 8 cut(s) 74, 198, 285, 306, 391, 448, 451, 585
MseI TTAA 4 cut(s) 285, 315, 629, 637
MslI CAYNNNNRTG 4 cut(s) 69, 333, 385, 582
MspA1I CMGCKG 1 cut(s) 240
MspI CCGG 1 cut(s) 58
MunI CAATTG 1 cut(s) 515
Mva1269I GAATGC 3 cut(s) 92, 122, 534
MwoI GCNNNNNNNGC 3 cut(s) 108, 117, 126
NdeII GATC 4 cut(s) 157, 174, 361, 511
NlaIII CATG 1 cut(s) 97
NlaIV GGNNCC 2 cut(s) 9, 363
NspI RCATGY 1 cut(s) 97
PceI AGGCCT 2 cut(s) 295, 634
PciI ACATGT 1 cut(s) 93
PctI GAATGC 3 cut(s) 92, 122, 534
PfeI GAWTC 2 cut(s) 23, 217
PscI ACATGT 1 cut(s) 93
PshAI GACNNNNGTC 1 cut(s) 184
PspEI GGTNACC 1 cut(s) 486
PspN4I GGNNCC 2 cut(s) 9, 363
PspPI GGNCC 1 cut(s) 74
PsuI RGATCY 1 cut(s) 361
RsaI GTAC 3 cut(s) 9, 98, 545
RsaNI GTAC 3 cut(s) 8, 97, 544
RseI CAYNNNNRTG 4 cut(s) 69, 333, 385, 582
SalI GTCGAC 1 cut(s) 34
SaqAI TTAA 4 cut(s) 285, 315, 629, 637
Sau3AI GATC 4 cut(s) 157, 174, 361, 511
Sau96I GGNCC 1 cut(s) 74
SduI GDGCHC 2 cut(s) 326, 625
SetI ASST 8 cut(s) 13, 228, 396, 428, 475, 488, 577, 628
SfaNI GCATC 2 cut(s) 377, 574
SinI GGWCC 1 cut(s) 74
SmiMI CAYNNNNRTG 4 cut(s) 69, 333, 385, 582
SmlI CTYRAG 2 cut(s) 395, 433
SmoI CTYRAG 2 cut(s) 395, 433
Sse9I AATT 3 cut(s) 168, 500, 515
SseBI AGGCCT 2 cut(s) 295, 634
SsiI CCGC 2 cut(s) 240, 614
StuI AGGCCT 2 cut(s) 295, 634
TaaI ACNGT 2 cut(s) 183, 266
TaqI TCGA 1 cut(s) 35
TasI AATT 3 cut(s) 168, 500, 515
TatI WGTACW 1 cut(s) 96
TfiI GAWTC 2 cut(s) 23, 217
Tru1I TTAA 4 cut(s) 285, 315, 629, 637
Tru9I TTAA 4 cut(s) 285, 315, 629, 637
TscAI CASTG 1 cut(s) 271
TspDTI ATGAA 1 cut(s) 369
TspRI CASTG 1 cut(s) 271
VpaK11BI GGWCC 1 cut(s) 74
XceI RCATGY 1 cut(s) 97
XmiI GTMKAC 1 cut(s) 35
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.