Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb6

Orthogroup ID

OG0019250

Physical Location & Seq

Genomic Coordinates Forward (+)

11838049 .. 11840987

Gene Structure 2939 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_6g18030.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2178 bp

ATGCATATGATCGTAACCACCCCCGCCGGCGACTCCGTCTTCACCAACCACGCCTACTGCTCGCCGTCCGATCTTCCCACCTTCGCCAACCCTCAATCTGACCGCTGGTATGCCACCGTCGGCGACAACTACGTCCTATCTGTCAGCCCACAAGAGGGCATAGAGAGCGGCCACATTGCTCTGAATGCGACCCAACAAAACCAAGCTGGGGTTTCTGTTGGTGACAAGGTTTCTGTCACCAAATTTGTTCCGCCCGAAGAGCATTTTAAGTTGGCACTGCTTAAGATAGAGATAGAGCTGTTGGGGAAGAGAACCAAAACTCGACAGGTTGATGCTGTTTTTCTCGATGAGTTGCTTAGAAACAAGTACATGTACCAGATTATGACGGTTGGACAAAAAGTAGCATTCAAGTCTGATGGAGGTCGTGAATACGTTTTCACAGTCCATCAGGCTGCAGTAGAGGGACAAGAAAAGGCTGATGCTGATCTTGAAAGAGGGATGATTTCATCTGGGACATGCTTCATCTTTGAGACACCAAGGGGTTCAAATGCACTAAAGGTAATAAATCAGCGTAAAATCTTCACGCAGAAGGAACTTAATCTTCAAAAGCTCGGCATCGGTGGATTAAATGCCGAGTTTGAAAGTATATTTCGAAGAGCTTTTGCGTCCCGCGTAATCCCTCATCATGTGGTAAATAAATTGGGGATTAAACATGTGAAGGGAATGCTGCTTTATGGACCACCTGGTACTGGAAAAACTCTGGTGGCTCGTCAAATAGGGAAAATTTTGAATGGGAAAGATCCAAAGATTGTCAATGGCCCTGAAGTGTTGGATTGTTACGTTGGTGAAAGTGAGAAGAATGTTAGGGAGCTATTTGCTGATGCTGAACAGGATCAAATAGTTCATGGGGATGAAAGTGATTTGCATGTCATAATATTTGACGAAATTGATGCTATTTGTAAGAAAAGATCAGGCTCCAGCCGTGATAGTTCACGCATTCATGATAATATCGTGAACACATTACTTACCAAGATGGATGGAGTGGAGCCTCTGAATAACATTCTAATTATTGGATTGACTAACAGAAAGGAGTTGCTGGATGAAGCTCTTTTGAGACCAGGACGCCTGGAAGTTCAAATTCAGATAGGCCTTCCTGATAAAAAAGGCCGCCTACAGATTCTTCAAATTCATACAAACAAGATAAAGGAGAGCTCTTTTCTTGCTCCAGATGTGAATCTTCTAGACCTTGCTACTCGTGCAGAAAACTACAGTGGTGCAGAACTTGAAGGTGTTGTTAGAAGTGCTGTGTCATTTGCTTTTAACAGACAACTGAGTCTGGATGATCTTAAGAAGCCAGTGGATGAGGAGAATATTAAAGTTACCATGGATGATTTTAGACGCGCTCTTCAAGAAATTAGACCTACTTATGGAGCCTCAGCAGAGGAGCTTGAACGATGCAGGTTAAATGGCATTTTGAATTGTGGTGATCGACATAGGTATGCTTATGACAGAGCTATGCTACTCGTGGAGCAAGTTAGATCGAGTGAAGGAAGCCCTCTTCTTAAATGCCTTCTAGAAGGCCCTAGTGGCACTGGCAAATCTGCCTTAGCAGCTACCATTGGCATCCACAGCCGATTTCCATTTGTCAGGATTATTTCGGCGGAGTCCATGATTGGTCTTCATGACGAAAGGTCAAAATGTGTTCACCTCGAAAACGTCTTTGAGGAAGCTTACAAGTCACAATTGAGCATCATTATCTTGGACGACATTGAGAGGTTGATGGAGTTTATTCCTATTGGTCCAAGGTTCTCAACCATGATGTATCAAACACTATGGGGTCTTCTGAAGCGCCTTCCTCCAAAGGGAAACAAGCTTCTGGTGATAGGAACAACTAGTGAATTCGAATTCTTGGACTCAATTCGCTTTTGCAAGACATTTTCTCACGCTTACAATGTTCCTACACTAACTAGTGAGGATGCAAAGAAGGTGCTAGAGCAGTTGAAAGTTTTTACTGATGAGGACATAAATGCAGCTGCTGATGCCCTGAATGATATGCCTATCCAGAAGCTCTATACGATAATTGAGACCGCAGGGCAATGTGCCAAGCCTGTTTACCCTGGAAAAAAGAAAATAAATACGACTGACTTCTGTAATTGCCTTCGGGATATTGGGCGATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005794 GO:0005886 GO:0005911 GO:0009506 GO:0012505 GO:0016020 GO:0030054 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0055044 GO:0071944

KEGG Pathways

Metabolic & Signaling

ko04138 ko04721 ko04727 ko04962 map04138 map04721 map04727 map04962

Pfam Domains

Protein Families

AAA CDC48_2 CDC48_N

Protein Analysis

726

Amino Acids

80.86

Weight (kDa)

6.42

Isoelectric Point (pI)

40.5

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
AAA	PF00004	242 - 383	1.4e-34	ATPase family associated with various cellular activities (AAA)
AAA_lid_3	PF17862	410 - 446	4.6e-08	AAA+ lid domain
AAA	PF00004	524 - 639	8.8e-10	ATPase family associated with various cellular activities (AAA)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0019250)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_6g18030
rosa_chinensis	RchiOBHm_Chr3g0472291
rosa_laevigata	RLG00000024091
rosa_rugosa	Rorug03G0123700
rosa_samantha	Rh3AG176000 Rh3BG201700 Rh3DG173600
rosa_wichuraiana	Rw3G016530

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	2 cut(s)	131, 1332
Acc36I	ACCTGC	1 cut(s)	1449
AccBSI	CCGCTC	1 cut(s)	168
AccII	CGCG	2 cut(s)	672, 1401
AciI	CCGC	8 cut(s)	24, 103, 168, 251, 670, 1168, 1661, 2088
AclWI	GGATC	2 cut(s)	794, 900
AcoI	YGGCCR	1 cut(s)	169
AcsI	RAATTY	6 cut(s)	242, 783, 1137, 1185, 1898, 1904
AcuI	CTGAAG	2 cut(s)	843, 1865
AcyI	GRCGYC	1 cut(s)	1123
AfaI	GTAC	3 cut(s)	368, 374, 748
AfiI	CCNNNNNNNGG	6 cut(s)	154, 155, 208, 749, 1427, 1862
AflII	CTTAAG	2 cut(s)	281, 1346
AflIII	ACRYGT	2 cut(s)	369, 712
AhdI	GACNNNNNGTC	1 cut(s)	1690
AhlI	ACTAGT	2 cut(s)	1892, 1967
AjnI	CCWGG	4 cut(s)	742, 1117, 1125, 2116
Alw21I	GWGCWC	1 cut(s)	1214
Alw26I	GTCTC	3 cut(s)	524, 1108, 2078
AlwI	GGATC	2 cut(s)	794, 900
AlwNI	CAGNNNCTG	1 cut(s)	2036
AoxI	GGCC	5 cut(s)	169, 817, 1147, 1165, 1579
ApeKI	GCWGC	5 cut(s)	452, 727, 1610, 2030, 2033
ApoI	RAATTY	6 cut(s)	242, 783, 1137, 1185, 1898, 1904
AspLEI	GCGC	2 cut(s)	1403, 1851
AspS9I	GGNCC	4 cut(s)	737, 818, 1580, 1799
AsuHPI	GGTGA	7 cut(s)	34, 229, 233, 857, 1496, 1697, 1891
AsuII	TTCGAA	2 cut(s)	652, 1902
AvaII	GGWCC	2 cut(s)	737, 1799
BanII	GRGCYC	1 cut(s)	1214
BauI	CACGAG	2 cut(s)	1254, 1523
BbsI	GAAGAC	3 cut(s)	31, 1670, 1832
Bbv12I	GWGCWC	1 cut(s)	1214
BbvCI	CCTCAGC	1 cut(s)	1435
BbvI	GCAGC	5 cut(s)	439, 714, 1622, 2020, 2042
BccI	CCATC	5 cut(s)	410, 453, 1027, 1031, 1774
BceAI	ACGGC	2 cut(s)	49, 966
BcgI	CGANNNNNNTGC	2 cut(s)	932, 966
BciT130I	CCWGG	4 cut(s)	744, 1119, 1127, 2118
BcoDI	GTCTC	3 cut(s)	524, 1108, 2078
BcuI	ACTAGT	2 cut(s)	1892, 1967
BfaI	CTAG	6 cut(s)	1241, 1574, 1584, 1893, 1968, 1991
BfmI	CTRYAG	3 cut(s)	453, 1172, 1267
BfoI	RGCGCY	1 cut(s)	1852
BfrI	CTTAAG	2 cut(s)	281, 1346
BfuAI	ACCTGC	1 cut(s)	1449
BglI	GCCNNNNNGGC	1 cut(s)	1587
BisI	GCNGC	7 cut(s)	169, 453, 728, 1168, 1611, 2031, 2034
BlsI	GCNGC	7 cut(s)	170, 454, 729, 1169, 1612, 2032, 2035
Bme1390I	CCNGG	4 cut(s)	744, 1119, 1127, 2118
Bme18I	GGWCC	2 cut(s)	737, 1799
BmeRI	GACNNNNNGTC	1 cut(s)	1690
BmgT120I	GGNCC	4 cut(s)	737, 818, 1580, 1799
BmiI	GGNNCC	3 cut(s)	976, 1047, 1432
BmrFI	CCNGG	4 cut(s)	744, 1119, 1127, 2118
BpiI	GAAGAC	3 cut(s)	31, 1670, 1832
BpmI	CTGGAG	2 cut(s)	961, 1209
Bpu10I	CCTNAGC	2 cut(s)	1435, 1606
Bpu14I	TTCGAA	2 cut(s)	652, 1902
BsaBI	GATNNNNATC	2 cut(s)	483, 1233
BsaHI	GRCGYC	1 cut(s)	1123
BsaI	GGTCTC	2 cut(s)	1108, 2078
BsaJI	CCNNGG	4 cut(s)	536, 1383, 1802, 2116
Bsc4I	CCNNNNNNNGG	6 cut(s)	154, 155, 208, 749, 1427, 1862
Bse118I	RCCGGY	1 cut(s)	26
Bse1I	ACTGG	3 cut(s)	754, 1355, 1597
Bse3DI	GCAATG	2 cut(s)	174, 2102
Bse8I	GATNNNNATC	2 cut(s)	483, 1233
BseBI	CCWGG	4 cut(s)	744, 1119, 1127, 2118
BseDI	CCNNGG	4 cut(s)	536, 1383, 1802, 2116
BseGI	GGATG	9 cut(s)	504, 916, 1042, 1105, 1345, 1366, 1393, 1623, 1981
BseJI	GATNNNNATC	2 cut(s)	483, 1233
BseLI	CCNNNNNNNGG	6 cut(s)	154, 155, 208, 749, 1427, 1862
BseMI	GCAATG	2 cut(s)	174, 2102
BseMII	CTCAG	2 cut(s)	1322, 1449
BseNI	ACTGG	3 cut(s)	754, 1355, 1597
BseRI	GAGGAG	2 cut(s)	1379, 1457
BseXI	GCAGC	5 cut(s)	439, 714, 1622, 2020, 2042
BseYI	CCCAGC	1 cut(s)	206
BsgI	GTGCAG	2 cut(s)	1278, 1296
Bsh1236I	CGCG	2 cut(s)	672, 1401
BshFI	GGCC	5 cut(s)	171, 819, 1149, 1167, 1581
BsiHKAI	GWGCWC	1 cut(s)	1214
BsiSI	CCGG	1 cut(s)	27
BslFI	GGGAC	3 cut(s)	477, 526, 652
BslI	CCNNNNNNNGG	6 cut(s)	154, 155, 208, 749, 1427, 1862
BsmAI	GTCTC	3 cut(s)	524, 1108, 2078
BsmFI	GGGAC	3 cut(s)	477, 526, 652
BsmI	GAATGC	4 cut(s)	190, 404, 729, 996
BsnI	GGCC	5 cut(s)	171, 819, 1149, 1167, 1581
Bso31I	GGTCTC	2 cut(s)	1108, 2078
Bsp119I	TTCGAA	2 cut(s)	652, 1902
Bsp1286I	GDGCHC	1 cut(s)	1214
Bsp143I	GATC	9 cut(s)	9, 70, 484, 799, 892, 968, 1342, 1486, 1538
Bsp19I	CCATGG	1 cut(s)	1383
BspACI	CCGC	8 cut(s)	24, 103, 168, 251, 670, 1168, 1661, 2088
BspANI	GGCC	5 cut(s)	171, 819, 1149, 1167, 1581
BspCNI	CTCAG	2 cut(s)	1323, 1448
BspFNI	CGCG	2 cut(s)	672, 1401
BspHI	TCATGA	2 cut(s)	1000, 1681
BspLI	GGNNCC	3 cut(s)	976, 1047, 1432
BspMAI	CTGCAG	1 cut(s)	457
BspMI	ACCTGC	1 cut(s)	1449
BspPI	GGATC	2 cut(s)	794, 900
BspQI	GCTCTTC	3 cut(s)	252, 649, 1410
BspT104I	TTCGAA	2 cut(s)	652, 1902
BspTI	CTTAAG	2 cut(s)	281, 1346
BspTNI	GGTCTC	2 cut(s)	1108, 2078
BsrBI	CCGCTC	1 cut(s)	168
BsrDI	GCAATG	2 cut(s)	174, 2102
BsrFI	RCCGGY	1 cut(s)	26
BsrI	ACTGG	3 cut(s)	754, 1355, 1597
BssAI	RCCGGY	1 cut(s)	26
BssECI	CCNNGG	4 cut(s)	536, 1383, 1802, 2116
BssMI	GATC	9 cut(s)	9, 70, 484, 799, 892, 968, 1342, 1486, 1538
BssNI	GRCGYC	1 cut(s)	1123
BssSI	CACGAG	2 cut(s)	1254, 1523
BssT1I	CCWWGG	3 cut(s)	536, 1383, 1802
Bst2BI	CACGAG	2 cut(s)	1254, 1523
Bst2UI	CCWGG	4 cut(s)	744, 1119, 1127, 2118
Bst4CI	ACNGT	4 cut(s)	118, 388, 442, 1271
Bst6I	CTCTTC	5 cut(s)	252, 302, 649, 1410, 1563
BstACI	GRCGYC	1 cut(s)	1123
BstAFI	CTTAAG	2 cut(s)	281, 1346
BstBI	TTCGAA	2 cut(s)	652, 1902
BstC8I	GCNNGC	2 cut(s)	28, 62
BstDEI	CTNAG	4 cut(s)	356, 1331, 1435, 1606
BstDSI	CCRYGG	1 cut(s)	1383
BstF5I	GGATG	9 cut(s)	504, 916, 1042, 1105, 1345, 1366, 1393, 1623, 1981
BstFNI	CGCG	2 cut(s)	672, 1401
BstH2I	RGCGCY	1 cut(s)	1852
BstHHI	GCGC	2 cut(s)	1403, 1851
BstKTI	GATC	9 cut(s)	12, 73, 487, 802, 895, 971, 1345, 1489, 1541
BstMAI	GTCTC	3 cut(s)	524, 1108, 2078
BstMBI	GATC	9 cut(s)	9, 70, 484, 799, 892, 968, 1342, 1486, 1538
BstMWI	GCNNNNNNNGC	8 cut(s)	165, 185, 259, 1256, 1587, 1610, 1629, 2039
BstNI	CCWGG	4 cut(s)	744, 1119, 1127, 2118
BstNSI	RCATGY	4 cut(s)	373, 519, 716, 929
BstSCI	CCNGG	4 cut(s)	742, 1117, 1125, 2116
BstSFI	CTRYAG	3 cut(s)	453, 1172, 1267
BstUI	CGCG	2 cut(s)	672, 1401
BstV1I	GCAGC	5 cut(s)	439, 714, 1622, 2020, 2042
BstV2I	GAAGAC	3 cut(s)	31, 1670, 1832
BstX2I	RGATCY	1 cut(s)	799
BstYI	RGATCY	1 cut(s)	799
BsuRI	GGCC	5 cut(s)	171, 819, 1149, 1167, 1581
BtgI	CCRYGG	1 cut(s)	1383
BtsCI	GGATG	9 cut(s)	504, 916, 1042, 1105, 1345, 1366, 1393, 1623, 1981
BtsI	GCAGTG	1 cut(s)	275
BtsIMutI	CAGTG	4 cut(s)	275, 1276, 1362, 1590
BveI	ACCTGC	1 cut(s)	1449
Cac8I	GCNNGC	2 cut(s)	28, 62
CaiI	CAGNNNCTG	1 cut(s)	2036
CciI	TCATGA	2 cut(s)	1000, 1681
CfoI	GCGC	2 cut(s)	1403, 1851
Cfr10I	RCCGGY	1 cut(s)	26
Cfr13I	GGNCC	4 cut(s)	737, 818, 1580, 1799
CseI	GACGC	3 cut(s)	654, 1131, 1407
CsiI	ACCWGGT	1 cut(s)	742
Csp6I	GTAC	3 cut(s)	367, 373, 747
CviQI	GTAC	3 cut(s)	367, 373, 747
DdeI	CTNAG	4 cut(s)	356, 1331, 1435, 1606
DpnI	GATC	9 cut(s)	11, 72, 486, 801, 894, 970, 1344, 1488, 1540
DpnII	GATC	9 cut(s)	9, 70, 484, 799, 892, 968, 1342, 1486, 1538
DrdI	GACNNNNNNGTC	2 cut(s)	131, 1332
DriI	GACNNNNNGTC	1 cut(s)	1690
DseDI	GACNNNNNNGTC	2 cut(s)	131, 1332
EaeI	YGGCCR	1 cut(s)	169
Eam1104I	CTCTTC	5 cut(s)	252, 302, 649, 1410, 1563
Eam1105I	GACNNNNNGTC	1 cut(s)	1690
EarI	CTCTTC	5 cut(s)	252, 302, 649, 1410, 1563
EciI	GGCGGA	2 cut(s)	240, 1676
Ecl136II	GAGCTC	1 cut(s)	1212
Eco130I	CCWWGG	3 cut(s)	536, 1383, 1802
Eco147I	AGGCCT	1 cut(s)	1149
Eco24I	GRGCYC	1 cut(s)	1214
Eco31I	GGTCTC	2 cut(s)	1108, 2078
Eco47I	GGWCC	2 cut(s)	737, 1799
Eco53kI	GAGCTC	1 cut(s)	1212
Eco57I	CTGAAG	2 cut(s)	843, 1865
EcoICRI	GAGCTC	1 cut(s)	1212
EcoO109I	RGGNCCY	1 cut(s)	1580
EcoRI	GAATTC	2 cut(s)	1898, 1904
EcoRII	CCWGG	4 cut(s)	742, 1117, 1125, 2116
EcoT14I	CCWWGG	3 cut(s)	536, 1383, 1802
EcoT22I	ATGCAT	1 cut(s)	6
EcoT38I	GRGCYC	1 cut(s)	1214
ErhI	CCWWGG	3 cut(s)	536, 1383, 1802
FaqI	GGGAC	3 cut(s)	477, 526, 652
FauI	CCCGC	2 cut(s)	31, 677
FauNDI	CATATG	1 cut(s)	6
Fnu4HI	GCNGC	7 cut(s)	169, 453, 728, 1168, 1611, 2031, 2034
FokI	GGATG	9 cut(s)	511, 923, 1049, 1112, 1352, 1373, 1400, 1610, 1988
FriOI	GRGCYC	1 cut(s)	1214
Fsp4HI	GCNGC	7 cut(s)	169, 453, 728, 1168, 1611, 2031, 2034
FspBI	CTAG	6 cut(s)	1241, 1574, 1584, 1893, 1968, 1991
GlaI	GCGC	2 cut(s)	1402, 1850
GluI	GCNGC	7 cut(s)	169, 453, 728, 1168, 1611, 2031, 2034
GsaI	CCCAGC	1 cut(s)	210
GsuI	CTGGAG	2 cut(s)	961, 1209
HaeII	RGCGCY	1 cut(s)	1852
HaeIII	GGCC	5 cut(s)	171, 819, 1149, 1167, 1581
HapII	CCGG	1 cut(s)	27
HgaI	GACGC	3 cut(s)	654, 1131, 1407
HhaI	GCGC	2 cut(s)	1403, 1851
Hin1I	GRCGYC	1 cut(s)	1123
Hin6I	GCGC	2 cut(s)	1401, 1849
HinP1I	GCGC	2 cut(s)	1401, 1849
HindIII	AAGCTT	2 cut(s)	1728, 1871
HinfI	GANTC	6 cut(s)	32, 1177, 1234, 1333, 1664, 1913
HpaII	CCGG	1 cut(s)	27
HphI	GGTGA	7 cut(s)	34, 229, 233, 857, 1496, 1697, 1891
Hpy166II	GTNNAC	4 cut(s)	992, 1015, 1705, 2113
Hpy188I	TCNGA	7 cut(s)	70, 100, 183, 415, 1053, 1143, 1845
Hpy8I	GTNNAC	4 cut(s)	992, 1015, 1705, 2113
Hpy99I	CGWCG	1 cut(s)	122
HpyCH4III	ACNGT	4 cut(s)	118, 388, 442, 1271
HpyCH4IV	ACGT	4 cut(s)	132, 432, 840, 1716
HpyF10VI	GCNNNNNNNGC	8 cut(s)	165, 185, 259, 1256, 1587, 1610, 1629, 2039
HpyF3I	CTNAG	4 cut(s)	356, 1331, 1435, 1606
HpySE526I	ACGT	4 cut(s)	132, 432, 840, 1716
Hsp92I	GRCGYC	1 cut(s)	1123
HspAI	GCGC	2 cut(s)	1401, 1849
KroI	GCCGGC	1 cut(s)	26
KroNI	GCCGGC	1 cut(s)	28
Kzo9I	GATC	9 cut(s)	9, 70, 484, 799, 892, 968, 1342, 1486, 1538
LguI	GCTCTTC	3 cut(s)	252, 649, 1410
LmnI	GCTCC	7 cut(s)	868, 980, 1045, 1228, 1430, 1444, 1528
Lsp1109I	GCAGC	5 cut(s)	439, 714, 1622, 2020, 2042
MabI	ACCWGGT	1 cut(s)	742
MaeI	CTAG	6 cut(s)	1241, 1574, 1584, 1893, 1968, 1991
MaeII	ACGT	4 cut(s)	132, 432, 840, 1716
MaeIII	GTNAC	6 cut(s)	13, 221, 235, 836, 1378, 1737
MalI	GATC	9 cut(s)	11, 72, 486, 801, 894, 970, 1344, 1488, 1540
MbiI	CCGCTC	1 cut(s)	168
MboI	GATC	9 cut(s)	9, 70, 484, 799, 892, 968, 1342, 1486, 1538
MfeI	CAATTG	1 cut(s)	1742
MflI	RGATCY	1 cut(s)	799
MhlI	GDGCHC	1 cut(s)	1214
MlyI	GAGTC	4 cut(s)	26, 1342, 1673, 1907
MmeI	TCCRAC	2 cut(s)	370, 810
Mph1103I	ATGCAT	1 cut(s)	6
MreI	CGCCGGCG	1 cut(s)	26
MroNI	GCCGGC	1 cut(s)	26
MslI	CAYNNNNRTG	2 cut(s)	909, 1497
MspA1I	CMGCKG	2 cut(s)	105, 2033
MspCI	CTTAAG	2 cut(s)	281, 1346
MspI	CCGG	1 cut(s)	27
MspR9I	CCNGG	4 cut(s)	744, 1119, 1127, 2118
MunI	CAATTG	1 cut(s)	1742
Mva1269I	GAATGC	4 cut(s)	190, 404, 729, 996
MvaI	CCWGG	4 cut(s)	744, 1119, 1127, 2118
MvnI	CGCG	2 cut(s)	672, 1401
MwoI	GCNNNNNNNGC	8 cut(s)	165, 185, 259, 1256, 1587, 1610, 1629, 2039
NaeI	GCCGGC	1 cut(s)	28
NcoI	CCATGG	1 cut(s)	1383
NdeI	CATATG	1 cut(s)	6
NdeII	GATC	9 cut(s)	9, 70, 484, 799, 892, 968, 1342, 1486, 1538
NgoMIV	GCCGGC	1 cut(s)	26
NlaIV	GGNNCC	3 cut(s)	976, 1047, 1432
NmeAIII	GCCGAG	2 cut(s)	591, 658
NmuCI	GTSAC	3 cut(s)	221, 235, 1737
NsiI	ATGCAT	1 cut(s)	6
NspI	RCATGY	4 cut(s)	373, 519, 716, 929
NspV	TTCGAA	2 cut(s)	652, 1902
PagI	TCATGA	2 cut(s)	1000, 1681
PceI	AGGCCT	1 cut(s)	1149
PciI	ACATGT	2 cut(s)	369, 712
PciSI	GCTCTTC	3 cut(s)	252, 649, 1410
PctI	GAATGC	4 cut(s)	190, 404, 729, 996
PdiI	GCCGGC	1 cut(s)	28
PfeI	GAWTC	2 cut(s)	1177, 1234
PflFI	GACNNNGTC	1 cut(s)	35
PkrI	GCNGC	7 cut(s)	170, 454, 729, 1169, 1612, 2032, 2035
PleI	GAGTC	4 cut(s)	26, 1341, 1672, 1907
PpsI	GAGTC	4 cut(s)	26, 1341, 1672, 1907
PscI	ACATGT	2 cut(s)	369, 712
Psp124BI	GAGCTC	1 cut(s)	1214
Psp6I	CCWGG	4 cut(s)	742, 1117, 1125, 2116
PspFI	CCCAGC	1 cut(s)	206
PspGI	CCWGG	4 cut(s)	742, 1117, 1125, 2116
PspN4I	GGNNCC	3 cut(s)	976, 1047, 1432
PspPI	GGNCC	4 cut(s)	737, 818, 1580, 1799
PstI	CTGCAG	1 cut(s)	457
PstNI	CAGNNNCTG	1 cut(s)	2036
PsuI	RGATCY	1 cut(s)	799
PsyI	GACNNNGTC	1 cut(s)	35
PvuII	CAGCTG	1 cut(s)	2033
RsaI	GTAC	3 cut(s)	368, 374, 748
RsaNI	GTAC	3 cut(s)	367, 373, 747
RseI	CAYNNNNRTG	2 cut(s)	909, 1497
SacI	GAGCTC	1 cut(s)	1214
SapI	GCTCTTC	3 cut(s)	252, 649, 1410
SatI	GCNGC	7 cut(s)	169, 453, 728, 1168, 1611, 2031, 2034
Sau3AI	GATC	9 cut(s)	9, 70, 484, 799, 892, 968, 1342, 1486, 1538
Sau96I	GGNCC	4 cut(s)	737, 818, 1580, 1799
SchI	GAGTC	4 cut(s)	26, 1342, 1673, 1907
ScrFI	CCNGG	4 cut(s)	744, 1119, 1127, 2118
SduI	GDGCHC	1 cut(s)	1214
SexAI	ACCWGGT	1 cut(s)	742
SfcI	CTRYAG	3 cut(s)	453, 1172, 1267
SfuI	TTCGAA	2 cut(s)	652, 1902
SgrAI	CRCCGGYG	1 cut(s)	26
SinI	GGWCC	2 cut(s)	737, 1799
SmiMI	CAYNNNNRTG	2 cut(s)	909, 1497
SmlI	CTYRAG	2 cut(s)	281, 1346
SmoI	CTYRAG	2 cut(s)	281, 1346
SpeI	ACTAGT	2 cut(s)	1892, 1967
SseBI	AGGCCT	1 cut(s)	1149
SsiI	CCGC	8 cut(s)	24, 103, 168, 251, 670, 1168, 1661, 2088
SspI	AATATT	2 cut(s)	936, 1372
SspMI	CTAG	6 cut(s)	1241, 1574, 1584, 1893, 1968, 1991
SstI	GAGCTC	1 cut(s)	1214
StuI	AGGCCT	1 cut(s)	1149
StyD4I	CCNGG	4 cut(s)	742, 1117, 1125, 2116
StyI	CCWWGG	3 cut(s)	536, 1383, 1802
TaaI	ACNGT	4 cut(s)	118, 388, 442, 1271
TaiI	ACGT	4 cut(s)	135, 435, 843, 1719
TaqI	TCGA	7 cut(s)	322, 345, 652, 1489, 1541, 1710, 1902
TatI	WGTACW	1 cut(s)	366
TauI	GCSGC	2 cut(s)	171, 1170
TfiI	GAWTC	2 cut(s)	1177, 1234
TscAI	CASTG	4 cut(s)	282, 1276, 1362, 1597
TseFI	GTSAC	3 cut(s)	221, 235, 1737
TseI	GCWGC	5 cut(s)	452, 727, 1610, 2030, 2033
Tsp45I	GTSAC	3 cut(s)	221, 235, 1737
TspDTI	ATGAA	8 cut(s)	495, 511, 893, 927, 989, 1116, 1178, 1670
TspGWI	ACGGA	1 cut(s)	25
TspRI	CASTG	4 cut(s)	282, 1276, 1362, 1597
Tth111I	GACNNNGTC	1 cut(s)	35
Vha464I	CTTAAG	2 cut(s)	281, 1346
VpaK11BI	GGWCC	2 cut(s)	737, 1799
XapI	RAATTY	6 cut(s)	242, 783, 1137, 1185, 1898, 1904
XbaI	TCTAGA	2 cut(s)	1240, 1573
XceI	RCATGY	4 cut(s)	373, 519, 716, 929
XspI	CTAG	6 cut(s)	1241, 1574, 1584, 1893, 1968, 1991
Zsp2I	ATGCAT	1 cut(s)	6

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.