Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr3B

Orthogroup ID

OG0019250

Physical Location & Seq

Genomic Coordinates Forward (+)

17995484 .. 17998548

Gene Structure 3065 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh3BG201700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2283 bp

ATGAAAACCTATATAAACCCAACACTCTACTCCAAACCTAACCTTAATCCTAGACTTTCACTAAAGATTCTCCGGACACCCTTCTCGTCCCTTGTCCCAGCCACCATGCATATGATCGTAACCACGCCCGCCGGCGACTCCGCCTTCACCAACCACGCCTACTGCTCGCCGTCCGATCTTCCCACCTTCGCCGTCCCTCAATCCGGCCGCAGTTATGCCACCGTCGGCGACAACTACGTTCTATCTATCAGCCCCCAAGAGGGTATAGAGAGCGGCCACATTGCTCTGAATGCGACCCAGCAAAAGCAAGCTGGGGTTTCTGTTGGTGACCAAGTTTCTGCCACCAGATTTATTCCGCCCGAGGAGTGTTTTAACTTGGCACTGCTCAAGATAGAGATAGAGTTGCTGGGGAAAAGAACCAAAACTCGACAGGTCGATGCTGTTTTCCTCGACGAGTTACTTAGAAACAAGTTCATGTACCAGGTTATGATGGCAGGACAAAAAGTATCATTCAAGTCTGATGGAGGTCGTGAATACGTTTTCACAGTCCATCAAGCTGCAGTAGAGGGACAGGAAAAGGTTGATGCTGATCTTGAAAGAGGGATGATTTCATCAGGGACATACTTCATCTTCGAGACACCAAAGGGTTCAAATGGACTAAAGATACTAAATCAACGTAAAATCTTCACGCAGAAGGAACTTAATCTTCAAAAACTTGGCATCGGTGGATTAAATGCAGAGTTTGAAAGTATATTTCGAAGAGCTTTTGCCTCCCGTGTACTCCCTCATCATGTGGTGAATAAATTGGGGATTAAGCATGTGAAGGGCATGCTGCTTTATGGACCTCCCGGTACTGGAAAAACTCTGGTGGCTCGGCAAATAGGGAAAATTTTGAATGGGAAAGATCCAAAGATCGTCAATGGCCCTGAAGTGTTGGACTGTTACGTTGGTGAAAGTGAGAAGAATGTTAGGGAGCTATTTGCTGATGCTGAACAAGATCAAATAGTTCATGGGGATGAAAGTGATTTGCATGTCATAATATTTGATGAAATTGATGCAATTTGTAAGAAAAGATCAGGTTCCAGCCGTGATAGTTCACGCATTCATGATAATATTGTGAACACATTACTTACCAAGATGGATGGGGTGGAGCCTCTCAATAATATTCTGATTATTGGATTGACTAACAGAAAGGAGTTGCTGGATGAAGCCCTTTTGAGACCAGGACGTCTGGAAGTTCAAATTCAGATAGGCCTTCCTGATAAAAAAGGTCGCCTACAGATTCTTCAAATTCATACAAACAAGATAAAGGAGAGCTCTTATCTTGCTCCTGACGTGAACCTTCGAGAGCTTGCTACTCGTGCAGAAAACTATAGCGGTGCAGAACTTGAAGGTGTTGTTAGAAGTGCTGTGTCATTTGCTTTTAATAGACAACTGAGTCTGGACGATCTTAAGAAGCCAGTGGACGAGGAGAATATTAAAGTTACTATGGATGATTTTCATCGTGCACTTCAAGAAATTAGACCTACTTATGGAGCCTTGGCAGAGGAGCTTGAACGATGCAGGTTAAATGGCATTGTGAATTGTGGTGATCGACATAGGCACGCTTATGACAGAGCTATGCTACTTGTGGAGCAAGTTAAATCAAGTGAAGGAAGTCCTCTTGTCAAATGCCTTCTAGAGGGCCCTAGTGGCACTGGCAAATCTGCCTTAGCAGCTACCATTGGCATCCACAGCCGCTTTCCATTTGTCAGGATTATTTCGGCTGAGTCCATGATTGGTCTTCATGACGAGAGGGCAAAGTGTGTTCACCTTGAAAACGTCTTCGAGGAAGCTTACAAGTCACAATTGAGCATCATTATTTTGGATGACGTTGAGAGGTTGATGGAGTTTATTCCTATTGGTCCAAGATTTTCAACCATGATATATCAAACACTATGGGGCCTTCTTAAGCGCTTTCCTCCAAAGGGGAACAAGCTTCTGGTGATTGGAACAACTAGTGAATTTGAATTCTTGGACTCAATTCGCTTTTGCAAGACATTCTCTCACACTTACAATGTTCCTACACTAACGAGTGAGGATGCAAAGAAGGTGCTAGAGCAGTTGCAAGTTTTTGCTGATGAGGATATAAATGCAGCTGCTGATGCCCTGAATGATATGCCTATCCAGAAGCTCTATACGTTAATTGAGACAGCAGGCCAATGTGCCAAGCCTGTTTACTCTGGAAAAAAGAAAATAAATATCAGTGACTTCTGTAATTGCCTTCGAGATATTGGGAGATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005794 GO:0005886 GO:0005911 GO:0009506 GO:0012505 GO:0016020 GO:0030054 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0055044 GO:0071944

KEGG Pathways

Metabolic & Signaling

ko04138 ko04721 ko04727 ko04962 map04138 map04721 map04727 map04962

Pfam Domains

Protein Families

AAA CDC48_2 CDC48_N

Protein Analysis

760

Amino Acids

84.64

Weight (kDa)

7.02

Isoelectric Point (pI)

39.73

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
AAA	PF00004	277 - 418	1.5e-34	ATPase family associated with various cellular activities (AAA)
AAA_lid_3	PF17862	445 - 481	7e-09	AAA+ lid domain
AAA	PF00004	559 - 674	4.6e-10	ATPase family associated with various cellular activities (AAA)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0019250)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_6g18030
rosa_chinensis	RchiOBHm_Chr3g0472291
rosa_laevigata	RLG00000024091
rosa_rugosa	Rorug03G0123700
rosa_samantha	Rh3AG176000 Rh3BG201700 Rh3DG173600
rosa_wichuraiana	Rw3G016530

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	2 cut(s)	1227, 1437
AatII	GACGTC	1 cut(s)	1231
Acc36I	ACCTGC	1 cut(s)	1554
AccBSI	CCGCTC	1 cut(s)	273
AccIII	TCCGGA	1 cut(s)	72
AciI	CCGC	7 cut(s)	129, 141, 208, 273, 356, 1377, 1738
AclWI	GGATC	1 cut(s)	899
AcoI	YGGCCR	2 cut(s)	205, 274
AcsI	RAATTY	5 cut(s)	888, 1242, 1290, 2003, 2009
AcuI	CTGAAG	1 cut(s)	948
AcyI	GRCGYC	1 cut(s)	1228
AfaI	GTAC	3 cut(s)	479, 780, 853
AfeI	AGCGCT	1 cut(s)	1955
AfiI	CCNNNNNNNGG	7 cut(s)	203, 259, 260, 854, 1532, 1681, 1967
AflII	CTTAAG	2 cut(s)	1451, 1949
AhlI	ACTAGT	1 cut(s)	1997
AjiI	CACGTC	1 cut(s)	1336
AjnI	CCWGG	2 cut(s)	480, 1222
Alw21I	GWGCWC	2 cut(s)	1319, 1510
Alw26I	GTCTC	3 cut(s)	629, 1213, 2183
Alw44I	GTGCAC	1 cut(s)	1506
AlwI	GGATC	1 cut(s)	899
AlwNI	CAGNNNCTG	1 cut(s)	2141
Ama87I	CYCGRG	1 cut(s)	359
Aor13HI	TCCGGA	1 cut(s)	72
Aor51HI	AGCGCT	1 cut(s)	1955
AoxI	GGCC	7 cut(s)	205, 274, 922, 1252, 1684, 1942, 2197
ApaI	GGGCCC	1 cut(s)	1688
ApaLI	GTGCAC	1 cut(s)	1506
ApeKI	GCWGC	5 cut(s)	557, 832, 1715, 2135, 2138
ApoI	RAATTY	5 cut(s)	888, 1242, 1290, 2003, 2009
AspLEI	GCGC	1 cut(s)	1956
AspS9I	GGNCC	6 cut(s)	842, 923, 1684, 1685, 1904, 1942
AsuC2I	CCSGG	1 cut(s)	849
AsuHPI	GGTGA	7 cut(s)	139, 338, 808, 962, 1601, 1802, 1996
AsuII	TTCGAA	1 cut(s)	757
AvaI	CYCGRG	1 cut(s)	359
AvaII	GGWCC	2 cut(s)	842, 1904
BaeGI	GKGCMC	2 cut(s)	1510, 1688
BanII	GRGCYC	2 cut(s)	1319, 1688
BauI	CACGAG	1 cut(s)	1359
BbsI	GAAGAC	2 cut(s)	1775, 1816
Bbv12I	GWGCWC	2 cut(s)	1319, 1510
BbvI	GCAGC	5 cut(s)	544, 819, 1727, 2125, 2147
BccI	CCATC	6 cut(s)	484, 515, 558, 1132, 1136, 1879
BceAI	ACGGC	3 cut(s)	154, 176, 1071
BciT130I	CCWGG	2 cut(s)	482, 1224
BcnI	CCSGG	1 cut(s)	849
BcoDI	GTCTC	3 cut(s)	629, 1213, 2183
BcuI	ACTAGT	1 cut(s)	1997
BfaI	CTAG	5 cut(s)	51, 1679, 1689, 1998, 2096
BfmI	CTRYAG	3 cut(s)	558, 1277, 1372
BfoI	RGCGCY	1 cut(s)	1957
BfrI	CTTAAG	2 cut(s)	1451, 1949
BfuAI	ACCTGC	1 cut(s)	1554
BglI	GCCNNNNNGGC	1 cut(s)	1692
BisI	GCNGC	8 cut(s)	208, 274, 558, 833, 1716, 1738, 2136, 2139
BlsI	GCNGC	8 cut(s)	209, 275, 559, 834, 1717, 1739, 2137, 2140
Bme1390I	CCNGG	3 cut(s)	482, 849, 1224
Bme18I	GGWCC	2 cut(s)	842, 1904
BmeT110I	CYCGRG	1 cut(s)	359
BmgBI	CACGTC	1 cut(s)	1336
BmgT120I	GGNCC	6 cut(s)	842, 923, 1684, 1685, 1904, 1942
BmiI	GGNNCC	5 cut(s)	1081, 1152, 1537, 1686, 1943
BmrFI	CCNGG	3 cut(s)	482, 849, 1224
BpiI	GAAGAC	2 cut(s)	1775, 1816
Bpu10I	CCTNAGC	1 cut(s)	1711
Bpu14I	TTCGAA	1 cut(s)	757
BpuEI	CTTGAG	1 cut(s)	371
BpuMI	CCSGG	1 cut(s)	849
BsaBI	GATNNNNATC	2 cut(s)	588, 1500
BsaHI	GRCGYC	1 cut(s)	1228
BsaI	GGTCTC	1 cut(s)	1213
BsaJI	CCNNGG	2 cut(s)	360, 1539
BsaWI	WCCGGW	1 cut(s)	72
Bsc4I	CCNNNNNNNGG	7 cut(s)	203, 259, 260, 854, 1532, 1681, 1967
Bse118I	RCCGGY	1 cut(s)	131
Bse1I	ACTGG	3 cut(s)	859, 1460, 1702
Bse3DI	GCAATG	1 cut(s)	279
Bse8I	GATNNNNATC	2 cut(s)	588, 1500
BseAI	TCCGGA	1 cut(s)	72
BseBI	CCWGG	2 cut(s)	482, 1224
BseDI	CCNNGG	2 cut(s)	360, 1539
BseGI	GGATG	8 cut(s)	609, 1021, 1147, 1210, 1498, 1728, 1873, 2086
BseJI	GATNNNNATC	2 cut(s)	588, 1500
BseLI	CCNNNNNNNGG	7 cut(s)	203, 259, 260, 854, 1532, 1681, 1967
BseMI	GCAATG	1 cut(s)	279
BseMII	CTCAG	2 cut(s)	1427, 1758
BseNI	ACTGG	3 cut(s)	859, 1460, 1702
BseRI	GAGGAG	3 cut(s)	377, 1484, 1562
BseSI	GKGCMC	2 cut(s)	1510, 1688
BseX3I	CGGCCG	1 cut(s)	205
BseXI	GCAGC	5 cut(s)	544, 819, 1727, 2125, 2147
BseYI	CCCAGC	4 cut(s)	97, 297, 311, 406
BsgI	GTGCAG	2 cut(s)	1383, 1401
Bsh1285I	CGRYCG	1 cut(s)	208
BshFI	GGCC	7 cut(s)	207, 276, 924, 1254, 1686, 1944, 2199
BsiEI	CGRYCG	1 cut(s)	208
BsiHKAI	GWGCWC	2 cut(s)	1319, 1510
BsiHKCI	CYCGRG	1 cut(s)	359
BsiSI	CCGG	4 cut(s)	73, 132, 204, 849
BslFI	GGGAC	5 cut(s)	73, 80, 179, 582, 631
BslI	CCNNNNNNNGG	7 cut(s)	203, 259, 260, 854, 1532, 1681, 1967
BsmAI	GTCTC	3 cut(s)	629, 1213, 2183
BsmFI	GGGAC	5 cut(s)	73, 80, 179, 582, 631
BsmI	GAATGC	2 cut(s)	295, 1101
BsnI	GGCC	7 cut(s)	207, 276, 924, 1254, 1686, 1944, 2199
Bso31I	GGTCTC	1 cut(s)	1213
BsoBI	CYCGRG	1 cut(s)	359
Bsp119I	TTCGAA	1 cut(s)	757
Bsp120I	GGGCCC	1 cut(s)	1684
Bsp1286I	GDGCHC	3 cut(s)	1319, 1510, 1688
Bsp13I	TCCGGA	1 cut(s)	72
Bsp143I	GATC	9 cut(s)	114, 175, 589, 904, 912, 997, 1073, 1447, 1591
BspACI	CCGC	7 cut(s)	129, 141, 208, 273, 356, 1377, 1738
BspANI	GGCC	7 cut(s)	207, 276, 924, 1254, 1686, 1944, 2199
BspCNI	CTCAG	2 cut(s)	1428, 1759
BspEI	TCCGGA	1 cut(s)	72
BspHI	TCATGA	2 cut(s)	1105, 1786
BspLI	GGNNCC	5 cut(s)	1081, 1152, 1537, 1686, 1943
BspMAI	CTGCAG	1 cut(s)	562
BspMI	ACCTGC	1 cut(s)	1554
BspPI	GGATC	1 cut(s)	899
BspQI	GCTCTTC	1 cut(s)	754
BspT104I	TTCGAA	1 cut(s)	757
BspTI	CTTAAG	2 cut(s)	1451, 1949
BspTNI	GGTCTC	1 cut(s)	1213
BsrBI	CCGCTC	1 cut(s)	273
BsrDI	GCAATG	1 cut(s)	279
BsrFI	RCCGGY	1 cut(s)	131
BsrI	ACTGG	3 cut(s)	859, 1460, 1702
BssAI	RCCGGY	1 cut(s)	131
BssECI	CCNNGG	2 cut(s)	360, 1539
BssMI	GATC	9 cut(s)	114, 175, 589, 904, 912, 997, 1073, 1447, 1591
BssNI	GRCGYC	1 cut(s)	1228
BssSI	CACGAG	1 cut(s)	1359
BssT1I	CCWWGG	1 cut(s)	1539
Bst2BI	CACGAG	1 cut(s)	1359
Bst2UI	CCWGG	2 cut(s)	482, 1224
Bst4CI	ACNGT	3 cut(s)	223, 547, 941
Bst6I	CTCTTC	1 cut(s)	754
BstACI	GRCGYC	1 cut(s)	1228
BstAFI	CTTAAG	2 cut(s)	1451, 1949
BstBI	TTCGAA	1 cut(s)	757
BstC8I	GCNNGC	8 cut(s)	129, 133, 167, 309, 830, 1353, 1605, 2197
BstDEI	CTNAG	4 cut(s)	461, 1436, 1711, 1767
BstEII	GGTNACC	1 cut(s)	326
BstENI	CCTNNNNNAGG	1 cut(s)	1679
BstF5I	GGATG	8 cut(s)	609, 1021, 1147, 1210, 1498, 1728, 1873, 2086
BstH2I	RGCGCY	1 cut(s)	1957
BstHHI	GCGC	1 cut(s)	1956
BstKTI	GATC	9 cut(s)	117, 178, 592, 907, 915, 1000, 1076, 1450, 1594
BstMAI	GTCTC	3 cut(s)	629, 1213, 2183
BstMBI	GATC	9 cut(s)	114, 175, 589, 904, 912, 997, 1073, 1447, 1591
BstMCI	CGRYCG	1 cut(s)	208
BstMWI	GCNNNNNNNGC	6 cut(s)	290, 1361, 1692, 1715, 1734, 2144
BstNI	CCWGG	2 cut(s)	482, 1224
BstNSI	RCATGY	3 cut(s)	821, 832, 1034
BstPI	GGTNACC	1 cut(s)	326
BstSCI	CCNGG	3 cut(s)	480, 847, 1222
BstSFI	CTRYAG	3 cut(s)	558, 1277, 1372
BstSLI	GKGCMC	2 cut(s)	1510, 1688
BstV1I	GCAGC	5 cut(s)	544, 819, 1727, 2125, 2147
BstV2I	GAAGAC	2 cut(s)	1775, 1816
BstX2I	RGATCY	1 cut(s)	904
BstYI	RGATCY	1 cut(s)	904
BstZI	CGGCCG	1 cut(s)	205
BsuRI	GGCC	7 cut(s)	207, 276, 924, 1254, 1686, 1944, 2199
BtrI	CACGTC	1 cut(s)	1336
BtsCI	GGATG	8 cut(s)	609, 1021, 1147, 1210, 1498, 1728, 1873, 2086
BtsI	GCAGTG	1 cut(s)	380
BtsIMutI	CAGTG	4 cut(s)	380, 1467, 1695, 2251
BveI	ACCTGC	1 cut(s)	1554
Cac8I	GCNNGC	8 cut(s)	129, 133, 167, 309, 830, 1353, 1605, 2197
CaiI	CAGNNNCTG	1 cut(s)	2141
CciI	TCATGA	2 cut(s)	1105, 1786
CfoI	GCGC	1 cut(s)	1956
Cfr10I	RCCGGY	1 cut(s)	131
Cfr13I	GGNCC	6 cut(s)	842, 923, 1684, 1685, 1904, 1942
CsiI	ACCWGGT	1 cut(s)	480
Csp6I	GTAC	3 cut(s)	478, 779, 852
CviQI	GTAC	3 cut(s)	478, 779, 852
DdeI	CTNAG	4 cut(s)	461, 1436, 1711, 1767
DpnI	GATC	9 cut(s)	116, 177, 591, 906, 914, 999, 1075, 1449, 1593
DpnII	GATC	9 cut(s)	114, 175, 589, 904, 912, 997, 1073, 1447, 1591
DrdI	GACNNNNNNGTC	2 cut(s)	1227, 1437
DseDI	GACNNNNNNGTC	2 cut(s)	1227, 1437
EaeI	YGGCCR	2 cut(s)	205, 274
EagI	CGGCCG	1 cut(s)	205
Eam1104I	CTCTTC	1 cut(s)	754
EarI	CTCTTC	1 cut(s)	754
EciI	GGCGGA	2 cut(s)	130, 345
Ecl136II	GAGCTC	1 cut(s)	1317
EclXI	CGGCCG	1 cut(s)	205
Eco130I	CCWWGG	1 cut(s)	1539
Eco147I	AGGCCT	1 cut(s)	1254
Eco24I	GRGCYC	2 cut(s)	1319, 1688
Eco31I	GGTCTC	1 cut(s)	1213
Eco47I	GGWCC	2 cut(s)	842, 1904
Eco47III	AGCGCT	1 cut(s)	1955
Eco52I	CGGCCG	1 cut(s)	205
Eco53kI	GAGCTC	1 cut(s)	1317
Eco57I	CTGAAG	1 cut(s)	948
Eco88I	CYCGRG	1 cut(s)	359
Eco91I	GGTNACC	1 cut(s)	326
EcoICRI	GAGCTC	1 cut(s)	1317
EcoNI	CCTNNNNNAGG	1 cut(s)	1679
EcoO109I	RGGNCCY	3 cut(s)	1684, 1685, 1942
EcoO65I	GGTNACC	1 cut(s)	326
EcoRI	GAATTC	1 cut(s)	2009
EcoRII	CCWGG	2 cut(s)	480, 1222
EcoT14I	CCWWGG	1 cut(s)	1539
EcoT22I	ATGCAT	1 cut(s)	111
EcoT38I	GRGCYC	2 cut(s)	1319, 1688
ErhI	CCWWGG	1 cut(s)	1539
FaqI	GGGAC	5 cut(s)	73, 80, 179, 582, 631
FauI	CCCGC	1 cut(s)	136
FauNDI	CATATG	1 cut(s)	111
Fnu4HI	GCNGC	8 cut(s)	208, 274, 558, 833, 1716, 1738, 2136, 2139
FokI	GGATG	8 cut(s)	616, 1028, 1154, 1217, 1505, 1715, 1880, 2093
FriOI	GRGCYC	2 cut(s)	1319, 1688
Fsp4HI	GCNGC	8 cut(s)	208, 274, 558, 833, 1716, 1738, 2136, 2139
FspBI	CTAG	5 cut(s)	51, 1679, 1689, 1998, 2096
GlaI	GCGC	1 cut(s)	1955
GluI	GCNGC	8 cut(s)	208, 274, 558, 833, 1716, 1738, 2136, 2139
GsaI	CCCAGC	4 cut(s)	101, 301, 315, 410
HaeII	RGCGCY	1 cut(s)	1957
HaeIII	GGCC	7 cut(s)	207, 276, 924, 1254, 1686, 1944, 2199
HapII	CCGG	4 cut(s)	73, 132, 204, 849
HhaI	GCGC	1 cut(s)	1956
Hin1I	GRCGYC	1 cut(s)	1228
Hin6I	GCGC	1 cut(s)	1954
HinP1I	GCGC	1 cut(s)	1954
HindIII	AAGCTT	2 cut(s)	1833, 1976
HinfI	GANTC	6 cut(s)	67, 137, 1282, 1438, 1769, 2018
HpaII	CCGG	4 cut(s)	73, 132, 204, 849
HphI	GGTGA	7 cut(s)	139, 338, 808, 962, 1601, 1802, 1996
Hpy166II	GTNNAC	8 cut(s)	779, 1097, 1120, 1339, 1465, 1508, 1810, 2218
Hpy188I	TCNGA	5 cut(s)	175, 288, 520, 1170, 1248
Hpy8I	GTNNAC	8 cut(s)	779, 1097, 1120, 1339, 1465, 1508, 1810, 2218
Hpy99I	CGWCG	2 cut(s)	227, 455
HpyCH4III	ACNGT	3 cut(s)	223, 547, 941
HpyCH4IV	ACGT	9 cut(s)	237, 537, 676, 945, 1228, 1335, 1821, 1872, 2180
HpyF10VI	GCNNNNNNNGC	6 cut(s)	290, 1361, 1692, 1715, 1734, 2144
HpyF3I	CTNAG	4 cut(s)	461, 1436, 1711, 1767
HpySE526I	ACGT	9 cut(s)	237, 537, 676, 945, 1228, 1335, 1821, 1872, 2180
Hsp92I	GRCGYC	1 cut(s)	1228
HspAI	GCGC	1 cut(s)	1954
Kpn2I	TCCGGA	1 cut(s)	72
KroI	GCCGGC	1 cut(s)	131
KroNI	GCCGGC	1 cut(s)	133
Kzo9I	GATC	9 cut(s)	114, 175, 589, 904, 912, 997, 1073, 1447, 1591
LguI	GCTCTTC	1 cut(s)	754
LmnI	GCTCC	6 cut(s)	973, 1150, 1333, 1535, 1549, 1633
Lsp1109I	GCAGC	5 cut(s)	544, 819, 1727, 2125, 2147
MabI	ACCWGGT	1 cut(s)	480
MaeI	CTAG	5 cut(s)	51, 1679, 1689, 1998, 2096
MaeII	ACGT	9 cut(s)	237, 537, 676, 945, 1228, 1335, 1821, 1872, 2180
MaeIII	GTNAC	7 cut(s)	118, 326, 456, 941, 1483, 1842, 2246
MalI	GATC	9 cut(s)	116, 177, 591, 906, 914, 999, 1075, 1449, 1593
MbiI	CCGCTC	1 cut(s)	273
MboI	GATC	9 cut(s)	114, 175, 589, 904, 912, 997, 1073, 1447, 1591
MboII	GAAGA	9 cut(s)	170, 622, 676, 698, 771, 973, 1277, 1775, 1816
MfeI	CAATTG	1 cut(s)	1847
MflI	RGATCY	1 cut(s)	904
MhlI	GDGCHC	3 cut(s)	1319, 1510, 1688
MlyI	GAGTC	4 cut(s)	131, 1447, 1778, 2012
MmeI	TCCRAC	1 cut(s)	915
Mph1103I	ATGCAT	1 cut(s)	111
MreI	CGCCGGCG	1 cut(s)	131
MroI	TCCGGA	1 cut(s)	72
MroNI	GCCGGC	1 cut(s)	131
MslI	CAYNNNNRTG	3 cut(s)	110, 1014, 1608
MspA1I	CMGCKG	1 cut(s)	2138
MspCI	CTTAAG	2 cut(s)	1451, 1949
MspI	CCGG	4 cut(s)	73, 132, 204, 849
MspR9I	CCNGG	3 cut(s)	482, 849, 1224
MunI	CAATTG	1 cut(s)	1847
Mva1269I	GAATGC	2 cut(s)	295, 1101
MvaI	CCWGG	2 cut(s)	482, 1224
MwoI	GCNNNNNNNGC	6 cut(s)	290, 1361, 1692, 1715, 1734, 2144
NaeI	GCCGGC	1 cut(s)	133
NciI	CCSGG	1 cut(s)	849
NdeI	CATATG	1 cut(s)	111
NdeII	GATC	9 cut(s)	114, 175, 589, 904, 912, 997, 1073, 1447, 1591
NgoMIV	GCCGGC	1 cut(s)	131
NlaIV	GGNNCC	5 cut(s)	1081, 1152, 1537, 1686, 1943
NmeAIII	GCCGAG	1 cut(s)	853
NmuCI	GTSAC	3 cut(s)	326, 1842, 2246
NsiI	ATGCAT	1 cut(s)	111
NspI	RCATGY	3 cut(s)	821, 832, 1034
NspV	TTCGAA	1 cut(s)	757
PaeI	GCATGC	1 cut(s)	832
PagI	TCATGA	2 cut(s)	1105, 1786
PceI	AGGCCT	1 cut(s)	1254
PciSI	GCTCTTC	1 cut(s)	754
PctI	GAATGC	2 cut(s)	295, 1101
PdiI	GCCGGC	1 cut(s)	133
PfeI	GAWTC	2 cut(s)	67, 1282
PkrI	GCNGC	8 cut(s)	209, 275, 559, 834, 1717, 1739, 2137, 2140
PleI	GAGTC	4 cut(s)	131, 1446, 1777, 2012
PpsI	GAGTC	4 cut(s)	131, 1446, 1777, 2012
Psp124BI	GAGCTC	1 cut(s)	1319
Psp6I	CCWGG	2 cut(s)	480, 1222
PspEI	GGTNACC	1 cut(s)	326
PspFI	CCCAGC	4 cut(s)	97, 297, 311, 406
PspGI	CCWGG	2 cut(s)	480, 1222
PspN4I	GGNNCC	5 cut(s)	1081, 1152, 1537, 1686, 1943
PspOMI	GGGCCC	1 cut(s)	1684
PspPI	GGNCC	6 cut(s)	842, 923, 1684, 1685, 1904, 1942
PstI	CTGCAG	1 cut(s)	562
PstNI	CAGNNNCTG	1 cut(s)	2141
PsuI	RGATCY	1 cut(s)	904
PvuII	CAGCTG	1 cut(s)	2138
RsaI	GTAC	3 cut(s)	479, 780, 853
RsaNI	GTAC	3 cut(s)	478, 779, 852
RseI	CAYNNNNRTG	3 cut(s)	110, 1014, 1608
SacI	GAGCTC	1 cut(s)	1319
SapI	GCTCTTC	1 cut(s)	754
SatI	GCNGC	8 cut(s)	208, 274, 558, 833, 1716, 1738, 2136, 2139
Sau3AI	GATC	9 cut(s)	114, 175, 589, 904, 912, 997, 1073, 1447, 1591
Sau96I	GGNCC	6 cut(s)	842, 923, 1684, 1685, 1904, 1942
SchI	GAGTC	4 cut(s)	131, 1447, 1778, 2012
ScrFI	CCNGG	3 cut(s)	482, 849, 1224
SduI	GDGCHC	3 cut(s)	1319, 1510, 1688
SexAI	ACCWGGT	1 cut(s)	480
SfcI	CTRYAG	3 cut(s)	558, 1277, 1372
SfuI	TTCGAA	1 cut(s)	757
SgrAI	CRCCGGYG	1 cut(s)	131
SinI	GGWCC	2 cut(s)	842, 1904
SmiMI	CAYNNNNRTG	3 cut(s)	110, 1014, 1608
SmlI	CTYRAG	3 cut(s)	386, 1451, 1949
SmoI	CTYRAG	3 cut(s)	386, 1451, 1949
SpeI	ACTAGT	1 cut(s)	1997
SphI	GCATGC	1 cut(s)	832
SseBI	AGGCCT	1 cut(s)	1254
SsiI	CCGC	7 cut(s)	129, 141, 208, 273, 356, 1377, 1738
SspI	AATATT	4 cut(s)	1041, 1114, 1165, 1477
SspMI	CTAG	5 cut(s)	51, 1679, 1689, 1998, 2096
SstI	GAGCTC	1 cut(s)	1319
StuI	AGGCCT	1 cut(s)	1254
StyD4I	CCNGG	3 cut(s)	480, 847, 1222
StyI	CCWWGG	1 cut(s)	1539
TaaI	ACNGT	3 cut(s)	223, 547, 941
TaiI	ACGT	9 cut(s)	240, 540, 679, 948, 1231, 1338, 1824, 1875, 2183
TaqI	TCGA	9 cut(s)	427, 435, 450, 633, 757, 1345, 1594, 1827, 2266
TatI	WGTACW	1 cut(s)	778
TauI	GCSGC	3 cut(s)	210, 276, 1740
TfiI	GAWTC	2 cut(s)	67, 1282
TscAI	CASTG	4 cut(s)	387, 1467, 1702, 2251
TseFI	GTSAC	3 cut(s)	326, 1842, 2246
TseI	GCWGC	5 cut(s)	557, 832, 1715, 2135, 2138
Tsp45I	GTSAC	3 cut(s)	326, 1842, 2246
TspRI	CASTG	4 cut(s)	387, 1467, 1702, 2251
Vha464I	CTTAAG	2 cut(s)	1451, 1949
VneI	GTGCAC	1 cut(s)	1506
VpaK11BI	GGWCC	2 cut(s)	842, 1904
XagI	CCTNNNNNAGG	1 cut(s)	1679
XapI	RAATTY	5 cut(s)	888, 1242, 1290, 2003, 2009
XbaI	TCTAGA	1 cut(s)	1678
XceI	RCATGY	3 cut(s)	821, 832, 1034
XspI	CTAG	5 cut(s)	51, 1679, 1689, 1998, 2096
ZraI	GACGTC	1 cut(s)	1229
Zsp2I	ATGCAT	1 cut(s)	111

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.