Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr3

Orthogroup ID

OG0019250

Physical Location & Seq

Genomic Coordinates Reverse (-)

17538519 .. 17541613

Gene Structure 3095 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw3G016530.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2178 bp

ATGCATATGATCGTAACCACGCCCGCCGGCGACTCCGCCTTCACCAACCACGCCTACTGCTCGCCGTCCGATCTTCCCACCTTCGCCGTCCCTCAATCAGGCCGCAGTTATGCCACCGTTGGCGACAACTACGTTCTATCTATCAGCCCCCAAGAGGGTATAGAGAGCGGCCACATTGCTCTGAATGCGACCCAACAAAAGCAAGCTGGGGTTTCTGTTGGTGACCAAGTTTCTGTCACCAGATTTATTCCGCCCGAGGAGTGTTTTAACCTGGCACTGCTCAAGATAGAGATAGAGTTGCTGGGGAAAAGAACCAAAACTCGACAGGTGGATGCTGTTTTCCTCGACGAGTTGCTTAGAAACAAGTTCATGTACCAGGTTATGATGGCTGGACAAAAAGTATCATTCAAGTCTGATGGAGGTCGTGAATACGTTTTCACAGTCCATCAAGCTGCAGTAGAGGGACAGGAAAAGGTTGATGCTGATATTGAAAGAGGGATGATTTCATCAGGGACATACTTCATCTTCGAGACACCAAAGGGTTCAAATGGACTAAAGATACTAAATCAACGTAAAATCTTCACGCAGAAGGAACTTAATCTTCAAAAACTTGGCATCGGTGGATTAAATGCAGAGTTTGAAAGTATATTTCGAAGAGCTTTTGCCTCCCGTGTACTCCCTCATCATGTGGTGAATAAATTGGGGATTAAGCATGTGAAGGGCATGCTGCTTTATGGACCGCCCGGTACTGGAAAAACTCTGGTGGCTCGGCAAATAGGGAAAATTTTGAATGGGAAAGATCCAAAGATCGTCAATGGCCCTGAAGTGTTGGACTGTTACGTTGGTGAAAGTGAGAAGAATGTTAGGGAGCTATTTGCTGATGCTGAACAAGATCAGATAGTTCATGGGGATGAAAGTGATTTGCATGTCATAATATTTGATGAAATTGATGCAATTTGTAAGAAAAGATCAGGTTCCAGCCGTGATAGTTCACGCATTCATGATAATATTGTGAACACATTACTTACCAAGATGGATGGAGTGGAGCCTCTCAATAATATTCTGATTATTGGATTGACTAACAGAAAGGAGTTGCTGGATGAAGCCCTTTTGAGACCAGGACGTCTGGAAGTTCAAATTCAGATAGGCCTTCCTGATAAAAAAGGTCGCCTACAGATTCTTCAAATTTATACAAACAAGATAAAGGAGAGCTCTTATCTTGCTCCTGATGTGAACCTTCGAGAGCTTGCTACTCGTGCAGAAAACTATAGCGGTGCAGAACTTGAAGGTGTTGTTAGAAGTGCTGTGTCATTTGCTTTTAATAGACAACTGAGTCTGGACGATCTTAAGAAGCCAGTGGACGAGGAGAATATTAAAGTTACTATGGATGATTTTCATCGCGCACTTCAAGAAATTAGACCTACTTATGGAGCCTTGGCAGAGGAGCTTGAACGATGCAGGTTAAATGGCATTGTGAATTGTGGTGATCGACATAGGCACGCTTATGACAGAGCTATGCTACTTGTGGAGCAAGTTAAATCAAGTGAAGGAAGTCCTCTTGTCAAATGCCTTCTAGAGGGCCCTAGTGGCACTGGCAAATCTGCCTTAGCAGCTACCATTGGCATCCACAGCCGATTTCCATTTGTCAGGATTATTTCGGCTGAGTCCATGATTGGTCTTCACGACGAGAGGGCAAAGTGTGTTCACCTTGAAAACGTCTTCGAGGAAGCTTACAAGTCACAATTGAGTATCATTATTTTGGATGACATTGAGAGGTTGATGGAGTTTATTCCTATTGGTCCAAGATTTTCAACCATGATATATCAAACACTATGGGGCCTTCTTAAGCGCTTTCCTCCAAAGGGGAACAAGCTTCTGGTGATTGGAACAACTAGTGAATTTGAATTCTTGGACTCAATTCGCTTTTGCAAGACATTCTCTCACACTTACAATGTTCCTACATTAACGAGTGAGGATGCAAAGAAGGTGCTAGAACAGTTGCAAGTTTTTGTTGATGAGGATATAAATGCAGCTGCTGATGCCCTGAATGATATGCCTATCCAGAAGCTCTATACGTTAATTGAGACAGCAGGCCAATGTGCCAAGCCAGTTTACTCTGGAAAAAAGAAAATAAATATCAGTGACTTCTGTAATTGCCTTCGAGATATTGGGAGATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005794 GO:0005886 GO:0005911 GO:0009506 GO:0012505 GO:0016020 GO:0030054 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0055044 GO:0071944

KEGG Pathways

Metabolic & Signaling

ko04138 ko04721 ko04727 ko04962 map04138 map04721 map04727 map04962

Pfam Domains

Protein Families

AAA CDC48_2 CDC48_N

Protein Analysis

725

Amino Acids

80.77

Weight (kDa)

6.32

Isoelectric Point (pI)

40.92

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
AAA	PF00004	242 - 383	1.4e-34	ATPase family associated with various cellular activities (AAA)
AAA_lid_3	PF17862	410 - 446	6.5e-09	AAA+ lid domain
AAA	PF00004	524 - 639	1.8e-10	ATPase family associated with various cellular activities (AAA)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0019250)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_6g18030
rosa_chinensis	RchiOBHm_Chr3g0472291
rosa_laevigata	RLG00000024091
rosa_rugosa	Rorug03G0123700
rosa_samantha	Rh3AG176000 Rh3BG201700 Rh3DG173600
rosa_wichuraiana	Rw3G016530

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	2 cut(s)	1122, 1332
AatII	GACGTC	1 cut(s)	1126
Acc36I	ACCTGC	1 cut(s)	1449
AccBSI	CCGCTC	1 cut(s)	168
AccII	CGCG	1 cut(s)	1401
AciI	CCGC	7 cut(s)	24, 36, 103, 168, 251, 740, 1272
AclWI	GGATC	1 cut(s)	794
AcoI	YGGCCR	1 cut(s)	169
AcsI	RAATTY	5 cut(s)	783, 1137, 1185, 1898, 1904
AcuI	CTGAAG	1 cut(s)	843
AcyI	GRCGYC	1 cut(s)	1123
AfaI	GTAC	3 cut(s)	374, 675, 748
AfeI	AGCGCT	1 cut(s)	1850
AfiI	CCNNNNNNNGG	7 cut(s)	98, 154, 155, 749, 1427, 1576, 1862
AflII	CTTAAG	2 cut(s)	1346, 1844
AhlI	ACTAGT	1 cut(s)	1892
AjnI	CCWGG	3 cut(s)	270, 375, 1117
Alw21I	GWGCWC	1 cut(s)	1214
Alw26I	GTCTC	3 cut(s)	524, 1108, 2078
AlwI	GGATC	1 cut(s)	794
AlwNI	CAGNNNCTG	1 cut(s)	2036
Ama87I	CYCGRG	1 cut(s)	254
Aor51HI	AGCGCT	1 cut(s)	1850
AoxI	GGCC	7 cut(s)	100, 169, 817, 1147, 1579, 1837, 2092
ApaI	GGGCCC	1 cut(s)	1583
ApeKI	GCWGC	5 cut(s)	452, 727, 1610, 2030, 2033
ApoI	RAATTY	5 cut(s)	783, 1137, 1185, 1898, 1904
AspLEI	GCGC	2 cut(s)	1403, 1851
AspS9I	GGNCC	6 cut(s)	737, 818, 1579, 1580, 1799, 1837
AsuC2I	CCSGG	1 cut(s)	744
AsuHPI	GGTGA	8 cut(s)	34, 229, 233, 703, 857, 1496, 1697, 1891
AsuII	TTCGAA	1 cut(s)	652
AvaI	CYCGRG	1 cut(s)	254
AvaII	GGWCC	2 cut(s)	737, 1799
BaeGI	GKGCMC	1 cut(s)	1583
BanII	GRGCYC	2 cut(s)	1214, 1583
BauI	CACGAG	1 cut(s)	1254
BbsI	GAAGAC	2 cut(s)	1670, 1711
Bbv12I	GWGCWC	1 cut(s)	1214
BbvI	GCAGC	5 cut(s)	439, 714, 1622, 2020, 2042
BccI	CCATC	6 cut(s)	379, 410, 453, 1027, 1031, 1774
BceAI	ACGGC	3 cut(s)	49, 71, 966
BciT130I	CCWGG	3 cut(s)	272, 377, 1119
BcnI	CCSGG	1 cut(s)	744
BcoDI	GTCTC	3 cut(s)	524, 1108, 2078
BcuI	ACTAGT	1 cut(s)	1892
BfaI	CTAG	4 cut(s)	1574, 1584, 1893, 1991
BfmI	CTRYAG	3 cut(s)	453, 1172, 1267
BfoI	RGCGCY	1 cut(s)	1852
BfrI	CTTAAG	2 cut(s)	1346, 1844
BfuAI	ACCTGC	1 cut(s)	1449
BglI	GCCNNNNNGGC	1 cut(s)	1587
BisI	GCNGC	7 cut(s)	103, 169, 453, 728, 1611, 2031, 2034
BlsI	GCNGC	7 cut(s)	104, 170, 454, 729, 1612, 2032, 2035
Bme1390I	CCNGG	4 cut(s)	272, 377, 744, 1119
Bme18I	GGWCC	2 cut(s)	737, 1799
BmeT110I	CYCGRG	1 cut(s)	254
BmgT120I	GGNCC	6 cut(s)	737, 818, 1579, 1580, 1799, 1837
BmiI	GGNNCC	5 cut(s)	976, 1047, 1432, 1581, 1838
BmrFI	CCNGG	4 cut(s)	272, 377, 744, 1119
BmsI	GCATC	9 cut(s)	322, 469, 624, 871, 940, 1445, 1632, 1966, 2029
BpiI	GAAGAC	2 cut(s)	1670, 1711
Bpu10I	CCTNAGC	1 cut(s)	1606
Bpu14I	TTCGAA	1 cut(s)	652
BpuEI	CTTGAG	1 cut(s)	266
BpuMI	CCSGG	1 cut(s)	744
BsaBI	GATNNNNATC	1 cut(s)	1395
BsaHI	GRCGYC	1 cut(s)	1123
BsaI	GGTCTC	1 cut(s)	1108
BsaJI	CCNNGG	2 cut(s)	255, 1434
Bsc4I	CCNNNNNNNGG	7 cut(s)	98, 154, 155, 749, 1427, 1576, 1862
Bse118I	RCCGGY	1 cut(s)	26
Bse1I	ACTGG	4 cut(s)	754, 1355, 1597, 2108
Bse3DI	GCAATG	1 cut(s)	174
Bse8I	GATNNNNATC	1 cut(s)	1395
BseBI	CCWGG	3 cut(s)	272, 377, 1119
BseDI	CCNNGG	2 cut(s)	255, 1434
BseGI	GGATG	9 cut(s)	337, 504, 916, 1042, 1105, 1393, 1623, 1768, 1981
BseJI	GATNNNNATC	1 cut(s)	1395
BseLI	CCNNNNNNNGG	7 cut(s)	98, 154, 155, 749, 1427, 1576, 1862
BseMI	GCAATG	1 cut(s)	174
BseMII	CTCAG	2 cut(s)	1322, 1653
BseNI	ACTGG	4 cut(s)	754, 1355, 1597, 2108
BseRI	GAGGAG	3 cut(s)	272, 1379, 1457
BseSI	GKGCMC	1 cut(s)	1583
BseXI	GCAGC	5 cut(s)	439, 714, 1622, 2020, 2042
BseYI	CCCAGC	2 cut(s)	206, 301
BsgI	GTGCAG	2 cut(s)	1278, 1296
Bsh1236I	CGCG	1 cut(s)	1401
BshFI	GGCC	7 cut(s)	102, 171, 819, 1149, 1581, 1839, 2094
BsiHKAI	GWGCWC	1 cut(s)	1214
BsiHKCI	CYCGRG	1 cut(s)	254
BsiSI	CCGG	2 cut(s)	27, 744
BslFI	GGGAC	3 cut(s)	74, 477, 526
BslI	CCNNNNNNNGG	7 cut(s)	98, 154, 155, 749, 1427, 1576, 1862
BsmAI	GTCTC	3 cut(s)	524, 1108, 2078
BsmFI	GGGAC	3 cut(s)	74, 477, 526
BsmI	GAATGC	2 cut(s)	190, 996
BsnI	GGCC	7 cut(s)	102, 171, 819, 1149, 1581, 1839, 2094
Bso31I	GGTCTC	1 cut(s)	1108
BsoBI	CYCGRG	1 cut(s)	254
Bsp119I	TTCGAA	1 cut(s)	652
Bsp120I	GGGCCC	1 cut(s)	1579
Bsp1286I	GDGCHC	2 cut(s)	1214, 1583
Bsp143I	GATC	8 cut(s)	9, 70, 799, 807, 892, 968, 1342, 1486
BspACI	CCGC	7 cut(s)	24, 36, 103, 168, 251, 740, 1272
BspANI	GGCC	7 cut(s)	102, 171, 819, 1149, 1581, 1839, 2094
BspCNI	CTCAG	2 cut(s)	1323, 1654
BspFNI	CGCG	1 cut(s)	1401
BspHI	TCATGA	1 cut(s)	1000
BspLI	GGNNCC	5 cut(s)	976, 1047, 1432, 1581, 1838
BspMAI	CTGCAG	1 cut(s)	457
BspMI	ACCTGC	1 cut(s)	1449
BspPI	GGATC	1 cut(s)	794
BspQI	GCTCTTC	1 cut(s)	649
BspT104I	TTCGAA	1 cut(s)	652
BspTI	CTTAAG	2 cut(s)	1346, 1844
BspTNI	GGTCTC	1 cut(s)	1108
BsrBI	CCGCTC	1 cut(s)	168
BsrDI	GCAATG	1 cut(s)	174
BsrFI	RCCGGY	1 cut(s)	26
BsrI	ACTGG	4 cut(s)	754, 1355, 1597, 2108
BssAI	RCCGGY	1 cut(s)	26
BssECI	CCNNGG	2 cut(s)	255, 1434
BssMI	GATC	8 cut(s)	9, 70, 799, 807, 892, 968, 1342, 1486
BssNI	GRCGYC	1 cut(s)	1123
BssSI	CACGAG	1 cut(s)	1254
BssT1I	CCWWGG	1 cut(s)	1434
Bst2BI	CACGAG	1 cut(s)	1254
Bst2UI	CCWGG	3 cut(s)	272, 377, 1119
Bst4CI	ACNGT	4 cut(s)	118, 442, 836, 1998
Bst6I	CTCTTC	1 cut(s)	649
BstACI	GRCGYC	1 cut(s)	1123
BstAFI	CTTAAG	2 cut(s)	1346, 1844
BstBI	TTCGAA	1 cut(s)	652
BstC8I	GCNNGC	8 cut(s)	24, 28, 62, 204, 725, 1248, 1500, 2092
BstDEI	CTNAG	4 cut(s)	356, 1331, 1606, 1662
BstEII	GGTNACC	1 cut(s)	221
BstENI	CCTNNNNNAGG	2 cut(s)	96, 1574
BstF5I	GGATG	9 cut(s)	337, 504, 916, 1042, 1105, 1393, 1623, 1768, 1981
BstFNI	CGCG	1 cut(s)	1401
BstH2I	RGCGCY	1 cut(s)	1852
BstHHI	GCGC	2 cut(s)	1403, 1851
BstKTI	GATC	8 cut(s)	12, 73, 802, 810, 895, 971, 1345, 1489
BstMAI	GTCTC	3 cut(s)	524, 1108, 2078
BstMBI	GATC	8 cut(s)	9, 70, 799, 807, 892, 968, 1342, 1486
BstMWI	GCNNNNNNNGC	6 cut(s)	185, 1256, 1587, 1610, 1629, 2039
BstNI	CCWGG	3 cut(s)	272, 377, 1119
BstNSI	RCATGY	3 cut(s)	716, 727, 929
BstPI	GGTNACC	1 cut(s)	221
BstSCI	CCNGG	4 cut(s)	270, 375, 742, 1117
BstSFI	CTRYAG	3 cut(s)	453, 1172, 1267
BstSLI	GKGCMC	1 cut(s)	1583
BstUI	CGCG	1 cut(s)	1401
BstV1I	GCAGC	5 cut(s)	439, 714, 1622, 2020, 2042
BstV2I	GAAGAC	2 cut(s)	1670, 1711
BstX2I	RGATCY	1 cut(s)	799
BstYI	RGATCY	1 cut(s)	799
BsuRI	GGCC	7 cut(s)	102, 171, 819, 1149, 1581, 1839, 2094
BtgZI	GCGATG	1 cut(s)	1382
BtsCI	GGATG	9 cut(s)	337, 504, 916, 1042, 1105, 1393, 1623, 1768, 1981
BtsI	GCAGTG	1 cut(s)	275
BtsIMutI	CAGTG	4 cut(s)	275, 1362, 1590, 2146
BveI	ACCTGC	1 cut(s)	1449
Cac8I	GCNNGC	8 cut(s)	24, 28, 62, 204, 725, 1248, 1500, 2092
CaiI	CAGNNNCTG	1 cut(s)	2036
CciI	TCATGA	1 cut(s)	1000
CfoI	GCGC	2 cut(s)	1403, 1851
Cfr10I	RCCGGY	1 cut(s)	26
Cfr13I	GGNCC	6 cut(s)	737, 818, 1579, 1580, 1799, 1837
CsiI	ACCWGGT	1 cut(s)	375
Csp6I	GTAC	3 cut(s)	373, 674, 747
CviAII	CATG	9 cut(s)	370, 686, 713, 724, 905, 926, 1001, 1669, 1816
CviQI	GTAC	3 cut(s)	373, 674, 747
DdeI	CTNAG	4 cut(s)	356, 1331, 1606, 1662
DpnI	GATC	8 cut(s)	11, 72, 801, 809, 894, 970, 1344, 1488
DpnII	GATC	8 cut(s)	9, 70, 799, 807, 892, 968, 1342, 1486
DrdI	GACNNNNNNGTC	2 cut(s)	1122, 1332
DseDI	GACNNNNNNGTC	2 cut(s)	1122, 1332
EaeI	YGGCCR	1 cut(s)	169
Eam1104I	CTCTTC	1 cut(s)	649
EarI	CTCTTC	1 cut(s)	649
EciI	GGCGGA	2 cut(s)	25, 240
Ecl136II	GAGCTC	1 cut(s)	1212
Eco130I	CCWWGG	1 cut(s)	1434
Eco147I	AGGCCT	1 cut(s)	1149
Eco24I	GRGCYC	2 cut(s)	1214, 1583
Eco31I	GGTCTC	1 cut(s)	1108
Eco47I	GGWCC	2 cut(s)	737, 1799
Eco47III	AGCGCT	1 cut(s)	1850
Eco53kI	GAGCTC	1 cut(s)	1212
Eco57I	CTGAAG	1 cut(s)	843
Eco88I	CYCGRG	1 cut(s)	254
Eco91I	GGTNACC	1 cut(s)	221
EcoICRI	GAGCTC	1 cut(s)	1212
EcoNI	CCTNNNNNAGG	2 cut(s)	96, 1574
EcoO109I	RGGNCCY	3 cut(s)	1579, 1580, 1837
EcoO65I	GGTNACC	1 cut(s)	221
EcoRI	GAATTC	1 cut(s)	1904
EcoRII	CCWGG	3 cut(s)	270, 375, 1117
EcoT14I	CCWWGG	1 cut(s)	1434
EcoT22I	ATGCAT	1 cut(s)	6
EcoT38I	GRGCYC	2 cut(s)	1214, 1583
ErhI	CCWWGG	1 cut(s)	1434
FaeI	CATG	9 cut(s)	373, 689, 716, 727, 908, 929, 1004, 1672, 1819
FaqI	GGGAC	3 cut(s)	74, 477, 526
FatI	CATG	9 cut(s)	369, 685, 712, 723, 904, 925, 1000, 1668, 1815
FauI	CCCGC	1 cut(s)	31
FauNDI	CATATG	1 cut(s)	6
Fnu4HI	GCNGC	7 cut(s)	103, 169, 453, 728, 1611, 2031, 2034
FokI	GGATG	9 cut(s)	344, 511, 923, 1049, 1112, 1400, 1610, 1775, 1988
FriOI	GRGCYC	2 cut(s)	1214, 1583
Fsp4HI	GCNGC	7 cut(s)	103, 169, 453, 728, 1611, 2031, 2034
FspBI	CTAG	4 cut(s)	1574, 1584, 1893, 1991
GlaI	GCGC	2 cut(s)	1402, 1850
GluI	GCNGC	7 cut(s)	103, 169, 453, 728, 1611, 2031, 2034
GsaI	CCCAGC	2 cut(s)	210, 305
HaeII	RGCGCY	1 cut(s)	1852
HaeIII	GGCC	7 cut(s)	102, 171, 819, 1149, 1581, 1839, 2094
HapII	CCGG	2 cut(s)	27, 744
HhaI	GCGC	2 cut(s)	1403, 1851
Hin1I	GRCGYC	1 cut(s)	1123
Hin1II	CATG	9 cut(s)	373, 689, 716, 727, 908, 929, 1004, 1672, 1819
Hin6I	GCGC	2 cut(s)	1401, 1849
HinP1I	GCGC	2 cut(s)	1401, 1849
HindIII	AAGCTT	2 cut(s)	1728, 1871
HinfI	GANTC	5 cut(s)	32, 1177, 1333, 1664, 1913
HpaII	CCGG	2 cut(s)	27, 744
HphI	GGTGA	8 cut(s)	34, 229, 233, 703, 857, 1496, 1697, 1891
Hpy166II	GTNNAC	7 cut(s)	674, 992, 1015, 1234, 1360, 1705, 2113
Hpy188I	TCNGA	6 cut(s)	70, 183, 415, 897, 1065, 1143
Hpy8I	GTNNAC	7 cut(s)	674, 992, 1015, 1234, 1360, 1705, 2113
Hpy99I	CGWCG	2 cut(s)	350, 1688
HpyCH4III	ACNGT	4 cut(s)	118, 442, 836, 1998
HpyCH4IV	ACGT	7 cut(s)	132, 432, 571, 840, 1123, 1716, 2075
HpyF10VI	GCNNNNNNNGC	6 cut(s)	185, 1256, 1587, 1610, 1629, 2039
HpyF3I	CTNAG	4 cut(s)	356, 1331, 1606, 1662
HpySE526I	ACGT	7 cut(s)	132, 432, 571, 840, 1123, 1716, 2075
Hsp92I	GRCGYC	1 cut(s)	1123
Hsp92II	CATG	9 cut(s)	373, 689, 716, 727, 908, 929, 1004, 1672, 1819
HspAI	GCGC	2 cut(s)	1401, 1849
KroI	GCCGGC	1 cut(s)	26
KroNI	GCCGGC	1 cut(s)	28
Kzo9I	GATC	8 cut(s)	9, 70, 799, 807, 892, 968, 1342, 1486
LguI	GCTCTTC	1 cut(s)	649
LmnI	GCTCC	6 cut(s)	868, 1045, 1228, 1430, 1444, 1528
Lsp1109I	GCAGC	5 cut(s)	439, 714, 1622, 2020, 2042
LweI	GCATC	9 cut(s)	322, 469, 624, 871, 940, 1445, 1632, 1966, 2029
MabI	ACCWGGT	1 cut(s)	375
MaeI	CTAG	4 cut(s)	1574, 1584, 1893, 1991
MaeII	ACGT	7 cut(s)	132, 432, 571, 840, 1123, 1716, 2075
MaeIII	GTNAC	7 cut(s)	13, 221, 235, 836, 1378, 1737, 2141
MalI	GATC	8 cut(s)	11, 72, 801, 809, 894, 970, 1344, 1488
MbiI	CCGCTC	1 cut(s)	168
MboI	GATC	8 cut(s)	9, 70, 799, 807, 892, 968, 1342, 1486
MboII	GAAGA	9 cut(s)	65, 517, 571, 593, 666, 868, 1172, 1670, 1711
MfeI	CAATTG	1 cut(s)	1742
MflI	RGATCY	1 cut(s)	799
MhlI	GDGCHC	2 cut(s)	1214, 1583
MlyI	GAGTC	4 cut(s)	26, 1342, 1673, 1907
MmeI	TCCRAC	1 cut(s)	810
Mph1103I	ATGCAT	1 cut(s)	6
MreI	CGCCGGCG	1 cut(s)	26
MroNI	GCCGGC	1 cut(s)	26
MslI	CAYNNNNRTG	2 cut(s)	909, 1503
MspA1I	CMGCKG	1 cut(s)	2033
MspCI	CTTAAG	2 cut(s)	1346, 1844
MspI	CCGG	2 cut(s)	27, 744
MspR9I	CCNGG	4 cut(s)	272, 377, 744, 1119
MunI	CAATTG	1 cut(s)	1742
Mva1269I	GAATGC	2 cut(s)	190, 996
MvaI	CCWGG	3 cut(s)	272, 377, 1119
MvnI	CGCG	1 cut(s)	1401
MwoI	GCNNNNNNNGC	6 cut(s)	185, 1256, 1587, 1610, 1629, 2039
NaeI	GCCGGC	1 cut(s)	28
NciI	CCSGG	1 cut(s)	744
NdeI	CATATG	1 cut(s)	6
NdeII	GATC	8 cut(s)	9, 70, 799, 807, 892, 968, 1342, 1486
NgoMIV	GCCGGC	1 cut(s)	26
NlaIII	CATG	9 cut(s)	373, 689, 716, 727, 908, 929, 1004, 1672, 1819
NlaIV	GGNNCC	5 cut(s)	976, 1047, 1432, 1581, 1838
NmeAIII	GCCGAG	1 cut(s)	748
NmuCI	GTSAC	4 cut(s)	221, 235, 1737, 2141
NsiI	ATGCAT	1 cut(s)	6
NspI	RCATGY	3 cut(s)	716, 727, 929
NspV	TTCGAA	1 cut(s)	652
PaeI	GCATGC	1 cut(s)	727
PagI	TCATGA	1 cut(s)	1000
PceI	AGGCCT	1 cut(s)	1149
PciSI	GCTCTTC	1 cut(s)	649
PctI	GAATGC	2 cut(s)	190, 996
PdiI	GCCGGC	1 cut(s)	28
PfeI	GAWTC	1 cut(s)	1177
PkrI	GCNGC	7 cut(s)	104, 170, 454, 729, 1612, 2032, 2035
PleI	GAGTC	4 cut(s)	26, 1341, 1672, 1907
PpsI	GAGTC	4 cut(s)	26, 1341, 1672, 1907
Psp124BI	GAGCTC	1 cut(s)	1214
Psp6I	CCWGG	3 cut(s)	270, 375, 1117
PspEI	GGTNACC	1 cut(s)	221
PspFI	CCCAGC	2 cut(s)	206, 301
PspGI	CCWGG	3 cut(s)	270, 375, 1117
PspN4I	GGNNCC	5 cut(s)	976, 1047, 1432, 1581, 1838
PspOMI	GGGCCC	1 cut(s)	1579
PspPI	GGNCC	6 cut(s)	737, 818, 1579, 1580, 1799, 1837
PstI	CTGCAG	1 cut(s)	457
PstNI	CAGNNNCTG	1 cut(s)	2036
PsuI	RGATCY	1 cut(s)	799
PvuII	CAGCTG	1 cut(s)	2033
RsaI	GTAC	3 cut(s)	374, 675, 748
RsaNI	GTAC	3 cut(s)	373, 674, 747
RseI	CAYNNNNRTG	2 cut(s)	909, 1503
SacI	GAGCTC	1 cut(s)	1214
SapI	GCTCTTC	1 cut(s)	649
SatI	GCNGC	7 cut(s)	103, 169, 453, 728, 1611, 2031, 2034
Sau3AI	GATC	8 cut(s)	9, 70, 799, 807, 892, 968, 1342, 1486
Sau96I	GGNCC	6 cut(s)	737, 818, 1579, 1580, 1799, 1837
SchI	GAGTC	4 cut(s)	26, 1342, 1673, 1907
ScrFI	CCNGG	4 cut(s)	272, 377, 744, 1119
SduI	GDGCHC	2 cut(s)	1214, 1583
SexAI	ACCWGGT	1 cut(s)	375
SfaNI	GCATC	9 cut(s)	322, 469, 624, 871, 940, 1445, 1632, 1966, 2029
SfcI	CTRYAG	3 cut(s)	453, 1172, 1267
SfuI	TTCGAA	1 cut(s)	652
SgrAI	CRCCGGYG	1 cut(s)	26
SinI	GGWCC	2 cut(s)	737, 1799
SmiMI	CAYNNNNRTG	2 cut(s)	909, 1503
SmlI	CTYRAG	3 cut(s)	281, 1346, 1844
SmoI	CTYRAG	3 cut(s)	281, 1346, 1844
SpeI	ACTAGT	1 cut(s)	1892
SphI	GCATGC	1 cut(s)	727
SseBI	AGGCCT	1 cut(s)	1149
SsiI	CCGC	7 cut(s)	24, 36, 103, 168, 251, 740, 1272
SspI	AATATT	4 cut(s)	936, 1009, 1060, 1372
SspMI	CTAG	4 cut(s)	1574, 1584, 1893, 1991
SstI	GAGCTC	1 cut(s)	1214
StuI	AGGCCT	1 cut(s)	1149
StyD4I	CCNGG	4 cut(s)	270, 375, 742, 1117
StyI	CCWWGG	1 cut(s)	1434
TaaI	ACNGT	4 cut(s)	118, 442, 836, 1998
TaiI	ACGT	7 cut(s)	135, 435, 574, 843, 1126, 1719, 2078
TaqI	TCGA	8 cut(s)	322, 345, 528, 652, 1240, 1489, 1722, 2161
TatI	WGTACW	1 cut(s)	673
TauI	GCSGC	2 cut(s)	105, 171
TfiI	GAWTC	1 cut(s)	1177
TscAI	CASTG	4 cut(s)	282, 1362, 1597, 2146
TseFI	GTSAC	4 cut(s)	221, 235, 1737, 2141
TseI	GCWGC	5 cut(s)	452, 727, 1610, 2030, 2033
Tsp45I	GTSAC	4 cut(s)	221, 235, 1737, 2141
TspDTI	ATGAA	9 cut(s)	358, 495, 511, 893, 927, 957, 989, 1116, 1385
TspRI	CASTG	4 cut(s)	282, 1362, 1597, 2146
Vha464I	CTTAAG	2 cut(s)	1346, 1844
VpaK11BI	GGWCC	2 cut(s)	737, 1799
XagI	CCTNNNNNAGG	2 cut(s)	96, 1574
XapI	RAATTY	5 cut(s)	783, 1137, 1185, 1898, 1904
XbaI	TCTAGA	1 cut(s)	1573
XceI	RCATGY	3 cut(s)	716, 727, 929
XspI	CTAG	4 cut(s)	1574, 1584, 1893, 1991
ZraI	GACGTC	1 cut(s)	1124
Zsp2I	ATGCAT	1 cut(s)	6

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.