Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr3A

Orthogroup ID

OG0019250

Physical Location & Seq

Genomic Coordinates Forward (+)

16414760 .. 16418109

Gene Structure 3350 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh3AG176000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2283 bp

ATGAAAACCTATATAAACCCAACACTCTACTCCAAACCTAACCTTAATCCTAGACTTTCACTAAAGATTCTCCGGACACCCTTCTCGTCCCTTGTCCCAGCCACCATGCATATGATCGTAACCACGCCCGCCGGCGACTCCGCCTTCACCAACCACGCCTACTGCTCGCCGTCCGATCTTCCCACCTTCGCCGTCCCTCAATCCGGCCGCAGTTATGCCACCGTCGGCGACAACTACGTTCTATCTATCAGCCCCCAAGAGGGTATAGAGAGCGGCCACATTGCTCTGAATGCGACCCAGCAAAAGCAAGCTGGGGTTTCTGTTGGTGACCAAGTTTCTGCCACCAGATTTATTCCGCCCGAGGAGTGTTTTAACTTGGCACTGCTCAAGATAGAGATAGAGTTGCTGGGGAAAAGAACCAAAACTCGACAGGTCGATGCTGTTTTCCTCGACGAGTTACTTAGAAACAAGTTCATGTACCAGGTTATGATGGCAGGACAAAAAGTATCATTCAAGTCTGATGGAGGTCGTGAATACGTTTTCACAGTCCATCAAGCTGCAGTAGAGGGACAGGAAAAGGTTGATGCTGATCTTGAAAGAGGGATGATTTCATCAGGGACATACTTCATCTTCGAGACACCAAAGGGTTCAAATGGACTAAAGATACTAAATCAACGTAAAATCTTCACGCAGAAGGAACTTAATCTTCAAAAACTTGGCATCGGTGGATTAAATGCAGAGTTTGAAAGTATATTTCGAAGAGCTTTTGCCTCCCGTGTACTCCCTCATCATGTGGTGAATAAATTGGGGATTAAGCATGTGAAGGGCATGCTGCTTTATGGACCTCCCGGTACTGGAAAAACTCTGGTGGCTCGGCAAATAGGGAAAATTTTGAATGGGAAAGATCCAAAGATCGTCAATGGCCCTGAAGTGTTGGACTGTTACGTTGGTGAAAGTGAGAAGAATGTTAGGGAGCTATTTGCTGATGCTGAACAAGATCAAATAGTTCATGGGGATGAAAGTGATTTGCATGTCATAATATTTGATGAAATTGATGCAATTTGTAAGAAAAGATCAGGTTCCAGCCGTGATAGTTCACGCATTCATGATAATATTGTGAACACATTACTTACCAAGATGGATGGGGTGGAGCCTCTCAATAATATTCTGATTATTGGATTGACTAACAGAAAGGAGTTGCTGGATGAAGCCCTTTTGAGACCAGGACGTCTGGAAGTTCAAATTCAGATAGGCCTTCCTGATAAAAAAGGTCGCCTACAGATTCTTCAAATTCATACAAACAAGATAAAGGAGAGCTCTTATCTTGCTCCTGACGTGAACCTTCGAGAGCTTGCTACTCGTGCAGAAAACTATAGCGGTGCAGAACTTGAAGGTGTTGTTAGAAGTGCTGTGTCATTTGCTTTTAATAGACAACTGAGTCTGGACGATCTTAAGAAGCCAGTGGACGAGGAGAATATTAAAGTTACTATGGATGATTTTCATCGTGCACTTCAAGAAATTAGACCTACTTATGGAGCCTTGGCAGAGGAGCTTGAACGATGCAGGTTAAATGGCATTGTGAATTGTGGTGATCGACATAGGCACGCTTATGACAGAGCTATGCTACTTGTGGAGCAAGTTAAATCAAGTGAAGGAAGTCCTCTTGTCAAATGCCTTCTAGAGGGCCCTAGTGGCACTGGCAAATCTGCCTTAGCAGCTACCATTGGCATCCACAGCCGCTTTCCATTTGTCAGGATTATTTCGGCTGAGTCCATGATTGGTCTTCATGACGAGAGGGCAAAGTGTGTTCACCTTGAAAACGTCTTCGAGGAAGCTTACAAGTCACAATTGAGCATCATTATTTTGGATGACGTTGAGAGGTTGATGGAGTTTATTCCTATTGGTCCAAGATTTTCAACCATGATATATCAAACACTATGGGGCCTTCTTAAGCGCTTTCCTCCAAAGGGGAACAAGCTTCTGGTGATTGGAACAACTAGTGAATTTGAATTCTTGGACTCAATTCGCTTTTGCAAGACATTCTCTCACACTTACAATGTTCCTACACTAACGAGTGAGGATGCAAAGAAGGTGCTAGAGCAGTTGCAAGTTTTTGCTGATGAGGATATAAATGCAGCTGCTGATGCCCTGAATGATATGCCTATCCAGAAGCTCTATACGTTAATTGAGACAGCAGGCCAATGTGCCAAGCCTGTTTACTCTGGAAAAAAGAAAATAAATATCAGTGACTTCTGTAATTGCCTTCGAGATATTGGGAGATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005794 GO:0005886 GO:0005911 GO:0009506 GO:0012505 GO:0016020 GO:0030054 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0055044 GO:0071944

KEGG Pathways

Metabolic & Signaling

ko04138 ko04721 ko04727 ko04962 map04138 map04721 map04727 map04962

Pfam Domains

Protein Families

AAA CDC48_2 CDC48_N

Protein Analysis

760

Amino Acids

84.64

Weight (kDa)

7.02

Isoelectric Point (pI)

39.73

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
AAA	PF00004	277 - 418	1.5e-34	ATPase family associated with various cellular activities (AAA)
AAA_lid_3	PF17862	445 - 481	7e-09	AAA+ lid domain
AAA	PF00004	559 - 674	4.6e-10	ATPase family associated with various cellular activities (AAA)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0019250)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_6g18030
rosa_chinensis	RchiOBHm_Chr3g0472291
rosa_laevigata	RLG00000024091
rosa_rugosa	Rorug03G0123700
rosa_samantha	Rh3AG176000 Rh3BG201700 Rh3DG173600
rosa_wichuraiana	Rw3G016530

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	2 cut(s)	1227, 1437
AatII	GACGTC	1 cut(s)	1231
Acc36I	ACCTGC	1 cut(s)	1554
AccBSI	CCGCTC	1 cut(s)	273
AccIII	TCCGGA	1 cut(s)	72
AciI	CCGC	7 cut(s)	129, 141, 208, 273, 356, 1377, 1738
AclWI	GGATC	1 cut(s)	899
AcoI	YGGCCR	2 cut(s)	205, 274
AcsI	RAATTY	5 cut(s)	888, 1242, 1290, 2003, 2009
AcuI	CTGAAG	1 cut(s)	948
AcyI	GRCGYC	1 cut(s)	1228
AfaI	GTAC	3 cut(s)	479, 780, 853
AfeI	AGCGCT	1 cut(s)	1955
AfiI	CCNNNNNNNGG	7 cut(s)	203, 259, 260, 854, 1532, 1681, 1967
AflII	CTTAAG	2 cut(s)	1451, 1949
AhlI	ACTAGT	1 cut(s)	1997
AjiI	CACGTC	1 cut(s)	1336
AjnI	CCWGG	2 cut(s)	480, 1222
Alw21I	GWGCWC	2 cut(s)	1319, 1510
Alw26I	GTCTC	3 cut(s)	629, 1213, 2183
Alw44I	GTGCAC	1 cut(s)	1506
AlwI	GGATC	1 cut(s)	899
AlwNI	CAGNNNCTG	1 cut(s)	2141
Ama87I	CYCGRG	1 cut(s)	359
Aor13HI	TCCGGA	1 cut(s)	72
Aor51HI	AGCGCT	1 cut(s)	1955
AoxI	GGCC	7 cut(s)	205, 274, 922, 1252, 1684, 1942, 2197
ApaI	GGGCCC	1 cut(s)	1688
ApaLI	GTGCAC	1 cut(s)	1506
ApeKI	GCWGC	5 cut(s)	557, 832, 1715, 2135, 2138
ApoI	RAATTY	5 cut(s)	888, 1242, 1290, 2003, 2009
AspLEI	GCGC	1 cut(s)	1956
AspS9I	GGNCC	6 cut(s)	842, 923, 1684, 1685, 1904, 1942
AsuC2I	CCSGG	1 cut(s)	849
AsuHPI	GGTGA	7 cut(s)	139, 338, 808, 962, 1601, 1802, 1996
AsuII	TTCGAA	1 cut(s)	757
AvaI	CYCGRG	1 cut(s)	359
AvaII	GGWCC	2 cut(s)	842, 1904
BaeGI	GKGCMC	2 cut(s)	1510, 1688
BanII	GRGCYC	2 cut(s)	1319, 1688
BauI	CACGAG	1 cut(s)	1359
BbsI	GAAGAC	2 cut(s)	1775, 1816
Bbv12I	GWGCWC	2 cut(s)	1319, 1510
BbvI	GCAGC	5 cut(s)	544, 819, 1727, 2125, 2147
BccI	CCATC	6 cut(s)	484, 515, 558, 1132, 1136, 1879
BceAI	ACGGC	3 cut(s)	154, 176, 1071
BciT130I	CCWGG	2 cut(s)	482, 1224
BcnI	CCSGG	1 cut(s)	849
BcoDI	GTCTC	3 cut(s)	629, 1213, 2183
BcuI	ACTAGT	1 cut(s)	1997
BfaI	CTAG	5 cut(s)	51, 1679, 1689, 1998, 2096
BfmI	CTRYAG	3 cut(s)	558, 1277, 1372
BfoI	RGCGCY	1 cut(s)	1957
BfrI	CTTAAG	2 cut(s)	1451, 1949
BfuAI	ACCTGC	1 cut(s)	1554
BglI	GCCNNNNNGGC	1 cut(s)	1692
BisI	GCNGC	8 cut(s)	208, 274, 558, 833, 1716, 1738, 2136, 2139
BlsI	GCNGC	8 cut(s)	209, 275, 559, 834, 1717, 1739, 2137, 2140
Bme1390I	CCNGG	3 cut(s)	482, 849, 1224
Bme18I	GGWCC	2 cut(s)	842, 1904
BmeT110I	CYCGRG	1 cut(s)	359
BmgBI	CACGTC	1 cut(s)	1336
BmgT120I	GGNCC	6 cut(s)	842, 923, 1684, 1685, 1904, 1942
BmiI	GGNNCC	5 cut(s)	1081, 1152, 1537, 1686, 1943
BmrFI	CCNGG	3 cut(s)	482, 849, 1224
BpiI	GAAGAC	2 cut(s)	1775, 1816
Bpu10I	CCTNAGC	1 cut(s)	1711
Bpu14I	TTCGAA	1 cut(s)	757
BpuEI	CTTGAG	1 cut(s)	371
BpuMI	CCSGG	1 cut(s)	849
BsaBI	GATNNNNATC	2 cut(s)	588, 1500
BsaHI	GRCGYC	1 cut(s)	1228
BsaI	GGTCTC	1 cut(s)	1213
BsaJI	CCNNGG	2 cut(s)	360, 1539
BsaWI	WCCGGW	1 cut(s)	72
Bsc4I	CCNNNNNNNGG	7 cut(s)	203, 259, 260, 854, 1532, 1681, 1967
Bse118I	RCCGGY	1 cut(s)	131
Bse1I	ACTGG	3 cut(s)	859, 1460, 1702
Bse3DI	GCAATG	1 cut(s)	279
Bse8I	GATNNNNATC	2 cut(s)	588, 1500
BseAI	TCCGGA	1 cut(s)	72
BseBI	CCWGG	2 cut(s)	482, 1224
BseDI	CCNNGG	2 cut(s)	360, 1539
BseGI	GGATG	8 cut(s)	609, 1021, 1147, 1210, 1498, 1728, 1873, 2086
BseJI	GATNNNNATC	2 cut(s)	588, 1500
BseLI	CCNNNNNNNGG	7 cut(s)	203, 259, 260, 854, 1532, 1681, 1967
BseMI	GCAATG	1 cut(s)	279
BseMII	CTCAG	2 cut(s)	1427, 1758
BseNI	ACTGG	3 cut(s)	859, 1460, 1702
BseRI	GAGGAG	3 cut(s)	377, 1484, 1562
BseSI	GKGCMC	2 cut(s)	1510, 1688
BseX3I	CGGCCG	1 cut(s)	205
BseXI	GCAGC	5 cut(s)	544, 819, 1727, 2125, 2147
BseYI	CCCAGC	4 cut(s)	97, 297, 311, 406
BsgI	GTGCAG	2 cut(s)	1383, 1401
Bsh1285I	CGRYCG	1 cut(s)	208
BshFI	GGCC	7 cut(s)	207, 276, 924, 1254, 1686, 1944, 2199
BsiEI	CGRYCG	1 cut(s)	208
BsiHKAI	GWGCWC	2 cut(s)	1319, 1510
BsiHKCI	CYCGRG	1 cut(s)	359
BsiSI	CCGG	4 cut(s)	73, 132, 204, 849
BslFI	GGGAC	5 cut(s)	73, 80, 179, 582, 631
BslI	CCNNNNNNNGG	7 cut(s)	203, 259, 260, 854, 1532, 1681, 1967
BsmAI	GTCTC	3 cut(s)	629, 1213, 2183
BsmFI	GGGAC	5 cut(s)	73, 80, 179, 582, 631
BsmI	GAATGC	2 cut(s)	295, 1101
BsnI	GGCC	7 cut(s)	207, 276, 924, 1254, 1686, 1944, 2199
Bso31I	GGTCTC	1 cut(s)	1213
BsoBI	CYCGRG	1 cut(s)	359
Bsp119I	TTCGAA	1 cut(s)	757
Bsp120I	GGGCCC	1 cut(s)	1684
Bsp1286I	GDGCHC	3 cut(s)	1319, 1510, 1688
Bsp13I	TCCGGA	1 cut(s)	72
Bsp143I	GATC	9 cut(s)	114, 175, 589, 904, 912, 997, 1073, 1447, 1591
BspACI	CCGC	7 cut(s)	129, 141, 208, 273, 356, 1377, 1738
BspANI	GGCC	7 cut(s)	207, 276, 924, 1254, 1686, 1944, 2199
BspCNI	CTCAG	2 cut(s)	1428, 1759
BspEI	TCCGGA	1 cut(s)	72
BspHI	TCATGA	2 cut(s)	1105, 1786
BspLI	GGNNCC	5 cut(s)	1081, 1152, 1537, 1686, 1943
BspMAI	CTGCAG	1 cut(s)	562
BspMI	ACCTGC	1 cut(s)	1554
BspPI	GGATC	1 cut(s)	899
BspQI	GCTCTTC	1 cut(s)	754
BspT104I	TTCGAA	1 cut(s)	757
BspTI	CTTAAG	2 cut(s)	1451, 1949
BspTNI	GGTCTC	1 cut(s)	1213
BsrBI	CCGCTC	1 cut(s)	273
BsrDI	GCAATG	1 cut(s)	279
BsrFI	RCCGGY	1 cut(s)	131
BsrI	ACTGG	3 cut(s)	859, 1460, 1702
BssAI	RCCGGY	1 cut(s)	131
BssECI	CCNNGG	2 cut(s)	360, 1539
BssMI	GATC	9 cut(s)	114, 175, 589, 904, 912, 997, 1073, 1447, 1591
BssNI	GRCGYC	1 cut(s)	1228
BssSI	CACGAG	1 cut(s)	1359
BssT1I	CCWWGG	1 cut(s)	1539
Bst2BI	CACGAG	1 cut(s)	1359
Bst2UI	CCWGG	2 cut(s)	482, 1224
Bst4CI	ACNGT	3 cut(s)	223, 547, 941
Bst6I	CTCTTC	1 cut(s)	754
BstACI	GRCGYC	1 cut(s)	1228
BstAFI	CTTAAG	2 cut(s)	1451, 1949
BstBI	TTCGAA	1 cut(s)	757
BstC8I	GCNNGC	8 cut(s)	129, 133, 167, 309, 830, 1353, 1605, 2197
BstDEI	CTNAG	4 cut(s)	461, 1436, 1711, 1767
BstEII	GGTNACC	1 cut(s)	326
BstENI	CCTNNNNNAGG	1 cut(s)	1679
BstF5I	GGATG	8 cut(s)	609, 1021, 1147, 1210, 1498, 1728, 1873, 2086
BstH2I	RGCGCY	1 cut(s)	1957
BstHHI	GCGC	1 cut(s)	1956
BstKTI	GATC	9 cut(s)	117, 178, 592, 907, 915, 1000, 1076, 1450, 1594
BstMAI	GTCTC	3 cut(s)	629, 1213, 2183
BstMBI	GATC	9 cut(s)	114, 175, 589, 904, 912, 997, 1073, 1447, 1591
BstMCI	CGRYCG	1 cut(s)	208
BstMWI	GCNNNNNNNGC	6 cut(s)	290, 1361, 1692, 1715, 1734, 2144
BstNI	CCWGG	2 cut(s)	482, 1224
BstNSI	RCATGY	3 cut(s)	821, 832, 1034
BstPI	GGTNACC	1 cut(s)	326
BstSCI	CCNGG	3 cut(s)	480, 847, 1222
BstSFI	CTRYAG	3 cut(s)	558, 1277, 1372
BstSLI	GKGCMC	2 cut(s)	1510, 1688
BstV1I	GCAGC	5 cut(s)	544, 819, 1727, 2125, 2147
BstV2I	GAAGAC	2 cut(s)	1775, 1816
BstX2I	RGATCY	1 cut(s)	904
BstYI	RGATCY	1 cut(s)	904
BstZI	CGGCCG	1 cut(s)	205
BsuRI	GGCC	7 cut(s)	207, 276, 924, 1254, 1686, 1944, 2199
BtrI	CACGTC	1 cut(s)	1336
BtsCI	GGATG	8 cut(s)	609, 1021, 1147, 1210, 1498, 1728, 1873, 2086
BtsI	GCAGTG	1 cut(s)	380
BtsIMutI	CAGTG	4 cut(s)	380, 1467, 1695, 2251
BveI	ACCTGC	1 cut(s)	1554
Cac8I	GCNNGC	8 cut(s)	129, 133, 167, 309, 830, 1353, 1605, 2197
CaiI	CAGNNNCTG	1 cut(s)	2141
CciI	TCATGA	2 cut(s)	1105, 1786
CfoI	GCGC	1 cut(s)	1956
Cfr10I	RCCGGY	1 cut(s)	131
Cfr13I	GGNCC	6 cut(s)	842, 923, 1684, 1685, 1904, 1942
CsiI	ACCWGGT	1 cut(s)	480
Csp6I	GTAC	3 cut(s)	478, 779, 852
CviQI	GTAC	3 cut(s)	478, 779, 852
DdeI	CTNAG	4 cut(s)	461, 1436, 1711, 1767
DpnI	GATC	9 cut(s)	116, 177, 591, 906, 914, 999, 1075, 1449, 1593
DpnII	GATC	9 cut(s)	114, 175, 589, 904, 912, 997, 1073, 1447, 1591
DrdI	GACNNNNNNGTC	2 cut(s)	1227, 1437
DseDI	GACNNNNNNGTC	2 cut(s)	1227, 1437
EaeI	YGGCCR	2 cut(s)	205, 274
EagI	CGGCCG	1 cut(s)	205
Eam1104I	CTCTTC	1 cut(s)	754
EarI	CTCTTC	1 cut(s)	754
EciI	GGCGGA	2 cut(s)	130, 345
Ecl136II	GAGCTC	1 cut(s)	1317
EclXI	CGGCCG	1 cut(s)	205
Eco130I	CCWWGG	1 cut(s)	1539
Eco147I	AGGCCT	1 cut(s)	1254
Eco24I	GRGCYC	2 cut(s)	1319, 1688
Eco31I	GGTCTC	1 cut(s)	1213
Eco47I	GGWCC	2 cut(s)	842, 1904
Eco47III	AGCGCT	1 cut(s)	1955
Eco52I	CGGCCG	1 cut(s)	205
Eco53kI	GAGCTC	1 cut(s)	1317
Eco57I	CTGAAG	1 cut(s)	948
Eco88I	CYCGRG	1 cut(s)	359
Eco91I	GGTNACC	1 cut(s)	326
EcoICRI	GAGCTC	1 cut(s)	1317
EcoNI	CCTNNNNNAGG	1 cut(s)	1679
EcoO109I	RGGNCCY	3 cut(s)	1684, 1685, 1942
EcoO65I	GGTNACC	1 cut(s)	326
EcoRI	GAATTC	1 cut(s)	2009
EcoRII	CCWGG	2 cut(s)	480, 1222
EcoT14I	CCWWGG	1 cut(s)	1539
EcoT22I	ATGCAT	1 cut(s)	111
EcoT38I	GRGCYC	2 cut(s)	1319, 1688
ErhI	CCWWGG	1 cut(s)	1539
FaqI	GGGAC	5 cut(s)	73, 80, 179, 582, 631
FauI	CCCGC	1 cut(s)	136
FauNDI	CATATG	1 cut(s)	111
Fnu4HI	GCNGC	8 cut(s)	208, 274, 558, 833, 1716, 1738, 2136, 2139
FokI	GGATG	8 cut(s)	616, 1028, 1154, 1217, 1505, 1715, 1880, 2093
FriOI	GRGCYC	2 cut(s)	1319, 1688
Fsp4HI	GCNGC	8 cut(s)	208, 274, 558, 833, 1716, 1738, 2136, 2139
FspBI	CTAG	5 cut(s)	51, 1679, 1689, 1998, 2096
GlaI	GCGC	1 cut(s)	1955
GluI	GCNGC	8 cut(s)	208, 274, 558, 833, 1716, 1738, 2136, 2139
GsaI	CCCAGC	4 cut(s)	101, 301, 315, 410
HaeII	RGCGCY	1 cut(s)	1957
HaeIII	GGCC	7 cut(s)	207, 276, 924, 1254, 1686, 1944, 2199
HapII	CCGG	4 cut(s)	73, 132, 204, 849
HhaI	GCGC	1 cut(s)	1956
Hin1I	GRCGYC	1 cut(s)	1228
Hin6I	GCGC	1 cut(s)	1954
HinP1I	GCGC	1 cut(s)	1954
HindIII	AAGCTT	2 cut(s)	1833, 1976
HinfI	GANTC	6 cut(s)	67, 137, 1282, 1438, 1769, 2018
HpaII	CCGG	4 cut(s)	73, 132, 204, 849
HphI	GGTGA	7 cut(s)	139, 338, 808, 962, 1601, 1802, 1996
Hpy166II	GTNNAC	8 cut(s)	779, 1097, 1120, 1339, 1465, 1508, 1810, 2218
Hpy188I	TCNGA	5 cut(s)	175, 288, 520, 1170, 1248
Hpy8I	GTNNAC	8 cut(s)	779, 1097, 1120, 1339, 1465, 1508, 1810, 2218
Hpy99I	CGWCG	2 cut(s)	227, 455
HpyCH4III	ACNGT	3 cut(s)	223, 547, 941
HpyCH4IV	ACGT	9 cut(s)	237, 537, 676, 945, 1228, 1335, 1821, 1872, 2180
HpyF10VI	GCNNNNNNNGC	6 cut(s)	290, 1361, 1692, 1715, 1734, 2144
HpyF3I	CTNAG	4 cut(s)	461, 1436, 1711, 1767
HpySE526I	ACGT	9 cut(s)	237, 537, 676, 945, 1228, 1335, 1821, 1872, 2180
Hsp92I	GRCGYC	1 cut(s)	1228
HspAI	GCGC	1 cut(s)	1954
Kpn2I	TCCGGA	1 cut(s)	72
KroI	GCCGGC	1 cut(s)	131
KroNI	GCCGGC	1 cut(s)	133
Kzo9I	GATC	9 cut(s)	114, 175, 589, 904, 912, 997, 1073, 1447, 1591
LguI	GCTCTTC	1 cut(s)	754
LmnI	GCTCC	6 cut(s)	973, 1150, 1333, 1535, 1549, 1633
Lsp1109I	GCAGC	5 cut(s)	544, 819, 1727, 2125, 2147
MabI	ACCWGGT	1 cut(s)	480
MaeI	CTAG	5 cut(s)	51, 1679, 1689, 1998, 2096
MaeII	ACGT	9 cut(s)	237, 537, 676, 945, 1228, 1335, 1821, 1872, 2180
MaeIII	GTNAC	7 cut(s)	118, 326, 456, 941, 1483, 1842, 2246
MalI	GATC	9 cut(s)	116, 177, 591, 906, 914, 999, 1075, 1449, 1593
MbiI	CCGCTC	1 cut(s)	273
MboI	GATC	9 cut(s)	114, 175, 589, 904, 912, 997, 1073, 1447, 1591
MboII	GAAGA	9 cut(s)	170, 622, 676, 698, 771, 973, 1277, 1775, 1816
MfeI	CAATTG	1 cut(s)	1847
MflI	RGATCY	1 cut(s)	904
MhlI	GDGCHC	3 cut(s)	1319, 1510, 1688
MlyI	GAGTC	4 cut(s)	131, 1447, 1778, 2012
MmeI	TCCRAC	1 cut(s)	915
Mph1103I	ATGCAT	1 cut(s)	111
MreI	CGCCGGCG	1 cut(s)	131
MroI	TCCGGA	1 cut(s)	72
MroNI	GCCGGC	1 cut(s)	131
MslI	CAYNNNNRTG	3 cut(s)	110, 1014, 1608
MspA1I	CMGCKG	1 cut(s)	2138
MspCI	CTTAAG	2 cut(s)	1451, 1949
MspI	CCGG	4 cut(s)	73, 132, 204, 849
MspR9I	CCNGG	3 cut(s)	482, 849, 1224
MunI	CAATTG	1 cut(s)	1847
Mva1269I	GAATGC	2 cut(s)	295, 1101
MvaI	CCWGG	2 cut(s)	482, 1224
MwoI	GCNNNNNNNGC	6 cut(s)	290, 1361, 1692, 1715, 1734, 2144
NaeI	GCCGGC	1 cut(s)	133
NciI	CCSGG	1 cut(s)	849
NdeI	CATATG	1 cut(s)	111
NdeII	GATC	9 cut(s)	114, 175, 589, 904, 912, 997, 1073, 1447, 1591
NgoMIV	GCCGGC	1 cut(s)	131
NlaIV	GGNNCC	5 cut(s)	1081, 1152, 1537, 1686, 1943
NmeAIII	GCCGAG	1 cut(s)	853
NmuCI	GTSAC	3 cut(s)	326, 1842, 2246
NsiI	ATGCAT	1 cut(s)	111
NspI	RCATGY	3 cut(s)	821, 832, 1034
NspV	TTCGAA	1 cut(s)	757
PaeI	GCATGC	1 cut(s)	832
PagI	TCATGA	2 cut(s)	1105, 1786
PceI	AGGCCT	1 cut(s)	1254
PciSI	GCTCTTC	1 cut(s)	754
PctI	GAATGC	2 cut(s)	295, 1101
PdiI	GCCGGC	1 cut(s)	133
PfeI	GAWTC	2 cut(s)	67, 1282
PkrI	GCNGC	8 cut(s)	209, 275, 559, 834, 1717, 1739, 2137, 2140
PleI	GAGTC	4 cut(s)	131, 1446, 1777, 2012
PpsI	GAGTC	4 cut(s)	131, 1446, 1777, 2012
Psp124BI	GAGCTC	1 cut(s)	1319
Psp6I	CCWGG	2 cut(s)	480, 1222
PspEI	GGTNACC	1 cut(s)	326
PspFI	CCCAGC	4 cut(s)	97, 297, 311, 406
PspGI	CCWGG	2 cut(s)	480, 1222
PspN4I	GGNNCC	5 cut(s)	1081, 1152, 1537, 1686, 1943
PspOMI	GGGCCC	1 cut(s)	1684
PspPI	GGNCC	6 cut(s)	842, 923, 1684, 1685, 1904, 1942
PstI	CTGCAG	1 cut(s)	562
PstNI	CAGNNNCTG	1 cut(s)	2141
PsuI	RGATCY	1 cut(s)	904
PvuII	CAGCTG	1 cut(s)	2138
RsaI	GTAC	3 cut(s)	479, 780, 853
RsaNI	GTAC	3 cut(s)	478, 779, 852
RseI	CAYNNNNRTG	3 cut(s)	110, 1014, 1608
SacI	GAGCTC	1 cut(s)	1319
SapI	GCTCTTC	1 cut(s)	754
SatI	GCNGC	8 cut(s)	208, 274, 558, 833, 1716, 1738, 2136, 2139
Sau3AI	GATC	9 cut(s)	114, 175, 589, 904, 912, 997, 1073, 1447, 1591
Sau96I	GGNCC	6 cut(s)	842, 923, 1684, 1685, 1904, 1942
SchI	GAGTC	4 cut(s)	131, 1447, 1778, 2012
ScrFI	CCNGG	3 cut(s)	482, 849, 1224
SduI	GDGCHC	3 cut(s)	1319, 1510, 1688
SexAI	ACCWGGT	1 cut(s)	480
SfcI	CTRYAG	3 cut(s)	558, 1277, 1372
SfuI	TTCGAA	1 cut(s)	757
SgrAI	CRCCGGYG	1 cut(s)	131
SinI	GGWCC	2 cut(s)	842, 1904
SmiMI	CAYNNNNRTG	3 cut(s)	110, 1014, 1608
SmlI	CTYRAG	3 cut(s)	386, 1451, 1949
SmoI	CTYRAG	3 cut(s)	386, 1451, 1949
SpeI	ACTAGT	1 cut(s)	1997
SphI	GCATGC	1 cut(s)	832
SseBI	AGGCCT	1 cut(s)	1254
SsiI	CCGC	7 cut(s)	129, 141, 208, 273, 356, 1377, 1738
SspI	AATATT	4 cut(s)	1041, 1114, 1165, 1477
SspMI	CTAG	5 cut(s)	51, 1679, 1689, 1998, 2096
SstI	GAGCTC	1 cut(s)	1319
StuI	AGGCCT	1 cut(s)	1254
StyD4I	CCNGG	3 cut(s)	480, 847, 1222
StyI	CCWWGG	1 cut(s)	1539
TaaI	ACNGT	3 cut(s)	223, 547, 941
TaiI	ACGT	9 cut(s)	240, 540, 679, 948, 1231, 1338, 1824, 1875, 2183
TaqI	TCGA	9 cut(s)	427, 435, 450, 633, 757, 1345, 1594, 1827, 2266
TatI	WGTACW	1 cut(s)	778
TauI	GCSGC	3 cut(s)	210, 276, 1740
TfiI	GAWTC	2 cut(s)	67, 1282
TscAI	CASTG	4 cut(s)	387, 1467, 1702, 2251
TseFI	GTSAC	3 cut(s)	326, 1842, 2246
TseI	GCWGC	5 cut(s)	557, 832, 1715, 2135, 2138
Tsp45I	GTSAC	3 cut(s)	326, 1842, 2246
TspRI	CASTG	4 cut(s)	387, 1467, 1702, 2251
Vha464I	CTTAAG	2 cut(s)	1451, 1949
VneI	GTGCAC	1 cut(s)	1506
VpaK11BI	GGWCC	2 cut(s)	842, 1904
XagI	CCTNNNNNAGG	1 cut(s)	1679
XapI	RAATTY	5 cut(s)	888, 1242, 1290, 2003, 2009
XbaI	TCTAGA	1 cut(s)	1678
XceI	RCATGY	3 cut(s)	821, 832, 1034
XspI	CTAG	5 cut(s)	51, 1679, 1689, 1998, 2096
ZraI	GACGTC	1 cut(s)	1229
Zsp2I	ATGCAT	1 cut(s)	111

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.