FvH4_6g21690

S locus-related glycoprotein 1 binding pollen coat protein (SLR1-BP)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb6
OG0021097
Physical Location & Seq
Reverse (-)
15241125 .. 15241839
715 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_6g21690.t1

Sequence Viewer

Length: 243 bp
ATGAAGGCACCCTGCACTCTCCTCTTTCTTCTTGTTTCAGTCGGAATCTATGCATCCTCAACTTTCCGTGGTCGTGCACACGCAATGAGGATCCCGGAGCACTCATGTCACAAGCAGATTGAATCAAGCAAATGTGAGCTTCAGAAATGCGTTCAGGAATGCTCCAAAGAACCATCTGGCTCAGGAGTGTGCAAAAGTACCATTTGTTTTTGCACATACTACTGCAAGGATCCTCCAAACTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
SLR1-BP

Protein Analysis

81

Amino Acids

8.86

Weight (kDa)

8.62

Isoelectric Point (pI)

66.25

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
SLR1-BP PF07333 33 - 75 2.3e-06 S locus-related glycoprotein 1 binding pollen coat protein (SLR1-BP)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0021097)

Species Orthologous Gene IDs
fragaria_vesca FvH4_6g21690
prunus_persica Prupe.7G083400_v2.0.a1 Prupe.7G095800_v2.0.a1
rosa_rugosa Rorug03G0169800
rosa_samantha Rh3BG253000

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 7
AclWI GGATC 4 cut(s) 85, 98, 224, 237
AcuI CTGAAG 1 cut(s) 125
AfaI GTAC 1 cut(s) 199
AgsI TTSAA 1 cut(s) 122
AluBI AGCT 1 cut(s) 139
AluI AGCT 1 cut(s) 139
Alw21I GWGCWC 2 cut(s) 79, 102
Alw44I GTGCAC 1 cut(s) 75
AlwI GGATC 4 cut(s) 85, 98, 224, 237
ApaLI GTGCAC 1 cut(s) 75
AsuC2I CCSGG 1 cut(s) 95
BaeGI GKGCMC 1 cut(s) 79
BamHI GGATCC 2 cut(s) 90, 229
BanI GGYRCC 1 cut(s) 7
Bbv12I GWGCWC 2 cut(s) 79, 102
BccI CCATC 1 cut(s) 181
BcnI CCSGG 1 cut(s) 95
Bme1390I CCNGG 1 cut(s) 95
BmiI GGNNCC 3 cut(s) 9, 92, 231
BmrFI CCNGG 1 cut(s) 95
BmsI GCATC 1 cut(s) 62
Bpu10I CCTNAGC 1 cut(s) 181
BpuMI CCSGG 1 cut(s) 95
BsaJI CCNNGG 1 cut(s) 67
Bse3DI GCAATG 1 cut(s) 90
BseDI CCNNGG 1 cut(s) 67
BseGI GGATG 1 cut(s) 53
BseMI GCAATG 1 cut(s) 90
BseMII CTCAG 1 cut(s) 195
BseRI GAGGAG 1 cut(s) 11
BseSI GKGCMC 1 cut(s) 79
BshNI GGYRCC 1 cut(s) 7
BsiHKAI GWGCWC 2 cut(s) 79, 102
BsiSI CCGG 1 cut(s) 95
BsmI GAATGC 1 cut(s) 164
Bsp1286I GDGCHC 2 cut(s) 79, 102
Bsp143I GATC 2 cut(s) 90, 229
BspCNI CTCAG 1 cut(s) 194
BspLI GGNNCC 3 cut(s) 9, 92, 231
BspPI GGATC 4 cut(s) 85, 98, 224, 237
BspT107I GGYRCC 1 cut(s) 7
BsrDI GCAATG 1 cut(s) 90
BssECI CCNNGG 1 cut(s) 67
BssMI GATC 2 cut(s) 90, 229
BstDEI CTNAG 1 cut(s) 181
BstDSI CCRYGG 1 cut(s) 67
BstF5I GGATG 1 cut(s) 53
BstKTI GATC 2 cut(s) 93, 232
BstMBI GATC 2 cut(s) 90, 229
BstSCI CCNGG 1 cut(s) 93
BstSLI GKGCMC 1 cut(s) 79
BstX2I RGATCY 2 cut(s) 90, 229
BstYI RGATCY 2 cut(s) 90, 229
BtgI CCRYGG 1 cut(s) 67
BtsCI GGATG 1 cut(s) 53
Csp6I GTAC 1 cut(s) 198
CviAII CATG 1 cut(s) 105
CviJI RGCY 2 cut(s) 139, 180
CviKI_1 RGCY 2 cut(s) 139, 180
CviQI GTAC 1 cut(s) 198
DdeI CTNAG 1 cut(s) 181
DpnI GATC 2 cut(s) 92, 231
DpnII GATC 2 cut(s) 90, 229
Eco57I CTGAAG 1 cut(s) 125
EcoT22I ATGCAT 1 cut(s) 55
FaeI CATG 1 cut(s) 108
FaiI YATR 3 cut(s) 51, 106, 217
FatI CATG 1 cut(s) 104
FokI GGATG 1 cut(s) 40
HapII CCGG 1 cut(s) 95
Hin1II CATG 1 cut(s) 108
HinfI GANTC 2 cut(s) 45, 122
HpaII CCGG 1 cut(s) 95
Hpy166II GTNNAC 1 cut(s) 77
Hpy188I TCNGA 2 cut(s) 44, 144
Hpy188III TCNNGA 2 cut(s) 155, 183
Hpy8I GTNNAC 1 cut(s) 77
HpyCH4V TGCA 6 cut(s) 15, 53, 77, 192, 213, 225
HpyF3I CTNAG 1 cut(s) 181
Hsp92II CATG 1 cut(s) 108
Kzo9I GATC 2 cut(s) 90, 229
LmnI GCTCC 2 cut(s) 97, 167
LpnPI CCDG 5 cut(s) 25, 108, 140, 162, 168
LweI GCATC 1 cut(s) 62
MaeIII GTNAC 1 cut(s) 107
MalI GATC 2 cut(s) 92, 231
MboI GATC 2 cut(s) 90, 229
MboII GAAGA 1 cut(s) 20
MflI RGATCY 2 cut(s) 90, 229
MhlI GDGCHC 2 cut(s) 79, 102
MmeI TCCRAC 1 cut(s) 22
MnlI CCTC 4 cut(s) 32, 67, 81, 243
Mph1103I ATGCAT 1 cut(s) 55
MspI CCGG 1 cut(s) 95
MspR9I CCNGG 1 cut(s) 95
Mva1269I GAATGC 1 cut(s) 164
NciI CCSGG 1 cut(s) 95
NdeII GATC 2 cut(s) 90, 229
NlaIII CATG 1 cut(s) 108
NlaIV GGNNCC 3 cut(s) 9, 92, 231
NmuCI GTSAC 1 cut(s) 107
NsiI ATGCAT 1 cut(s) 55
PctI GAATGC 1 cut(s) 164
PfeI GAWTC 2 cut(s) 45, 122
PfoI TCCNGGA 1 cut(s) 93
PspN4I GGNNCC 3 cut(s) 9, 92, 231
PsuI RGATCY 2 cut(s) 90, 229
RsaI GTAC 1 cut(s) 199
RsaNI GTAC 1 cut(s) 198
Sau3AI GATC 2 cut(s) 90, 229
ScrFI CCNGG 1 cut(s) 95
SduI GDGCHC 2 cut(s) 79, 102
SetI ASST 1 cut(s) 141
SfaNI GCATC 1 cut(s) 62
StyD4I CCNGG 1 cut(s) 93
TfiI GAWTC 2 cut(s) 45, 122
TseFI GTSAC 1 cut(s) 107
Tsp45I GTSAC 1 cut(s) 107
TspDTI ATGAA 1 cut(s) 17
TspGWI ACGGA 1 cut(s) 56
VneI GTGCAC 1 cut(s) 75
Zsp2I ATGCAT 1 cut(s) 55
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.