Rh3BG253000

S locus-related glycoprotein 1 binding pollen coat protein (SLR1-BP)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr3B
OG0021097
Physical Location & Seq
Reverse (-)
24473389 .. 24473989
601 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh3BG253000.1

Sequence Viewer

Length: 243 bp
ATGAAGGCATCCTGCACTCTCCTCTTTCTTCTTGTTTCAGTCGGAATCTTGGCATCCTCAACTGTCCGCGGTCGTGCACACGCGATAAGGATCCCCGAGCACTCATGTCATAAGCAGATTGAGTCAAGCAAATGTGAGCTCCAGAAATGCATTCAGGAATGCTCCAAAGAACCATCTGGCGCAGGAGTGTGCAAAAATACCATTTGCTTTTGCACATACTATTGCAAGAATCCTCCAAACTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
SLR1-BP

Protein Analysis

80

Amino Acids

8.76

Weight (kDa)

8.8

Isoelectric Point (pI)

66.17

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
SLR1-BP PF07333 34 - 75 3.8e-06 S locus-related glycoprotein 1 binding pollen coat protein (SLR1-BP)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0021097)

Species Orthologous Gene IDs
fragaria_vesca FvH4_6g21690
prunus_persica Prupe.7G083400_v2.0.a1 Prupe.7G095800_v2.0.a1
rosa_rugosa Rorug03G0169800
rosa_samantha Rh3BG253000

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 2 cut(s) 69, 83
AciI CCGC 2 cut(s) 67, 69
AclWI GGATC 2 cut(s) 85, 98
AluBI AGCT 1 cut(s) 139
AluI AGCT 1 cut(s) 139
Alw21I GWGCWC 3 cut(s) 79, 102, 141
Alw44I GTGCAC 1 cut(s) 75
AlwI GGATC 2 cut(s) 85, 98
Ama87I CYCGRG 1 cut(s) 95
ApaLI GTGCAC 1 cut(s) 75
AspLEI GCGC 1 cut(s) 182
AvaI CYCGRG 1 cut(s) 95
BaeGI GKGCMC 1 cut(s) 79
BamHI GGATCC 1 cut(s) 90
BanII GRGCYC 1 cut(s) 141
Bbv12I GWGCWC 3 cut(s) 79, 102, 141
BccI CCATC 1 cut(s) 181
BmeT110I CYCGRG 1 cut(s) 95
BmiI GGNNCC 1 cut(s) 92
BmsI GCATC 2 cut(s) 17, 62
BpmI CTGGAG 1 cut(s) 125
BsaBI GATNNNNATC 1 cut(s) 89
BsaJI CCNNGG 1 cut(s) 67
Bse8I GATNNNNATC 1 cut(s) 89
BseDI CCNNGG 1 cut(s) 67
BseGI GGATG 2 cut(s) 8, 53
BseJI GATNNNNATC 1 cut(s) 89
BseRI GAGGAG 1 cut(s) 11
BseSI GKGCMC 1 cut(s) 79
Bsh1236I CGCG 2 cut(s) 69, 83
Bsh1285I CGRYCG 1 cut(s) 73
BsiEI CGRYCG 1 cut(s) 73
BsiHKAI GWGCWC 3 cut(s) 79, 102, 141
BsiHKCI CYCGRG 1 cut(s) 95
BsmI GAATGC 2 cut(s) 150, 164
BsoBI CYCGRG 1 cut(s) 95
Bsp1286I GDGCHC 3 cut(s) 79, 102, 141
Bsp143I GATC 1 cut(s) 90
BspACI CCGC 2 cut(s) 67, 69
BspFNI CGCG 2 cut(s) 69, 83
BspLI GGNNCC 1 cut(s) 92
BspPI GGATC 2 cut(s) 85, 98
BssECI CCNNGG 1 cut(s) 67
BssMI GATC 1 cut(s) 90
Bst4CI ACNGT 1 cut(s) 64
BstDSI CCRYGG 1 cut(s) 67
BstF5I GGATG 2 cut(s) 8, 53
BstFNI CGCG 2 cut(s) 69, 83
BstHHI GCGC 1 cut(s) 182
BstKTI GATC 1 cut(s) 93
BstMBI GATC 1 cut(s) 90
BstMCI CGRYCG 1 cut(s) 73
BstSLI GKGCMC 1 cut(s) 79
BstUI CGCG 2 cut(s) 69, 83
BstX2I RGATCY 1 cut(s) 90
BstYI RGATCY 1 cut(s) 90
BtgI CCRYGG 1 cut(s) 67
BtsCI GGATG 2 cut(s) 8, 53
CfoI GCGC 1 cut(s) 182
Cfr42I CCGCGG 1 cut(s) 70
CviAII CATG 1 cut(s) 105
CviJI RGCY 1 cut(s) 139
CviKI_1 RGCY 1 cut(s) 139
DpnI GATC 1 cut(s) 92
DpnII GATC 1 cut(s) 90
Ecl136II GAGCTC 1 cut(s) 139
Eco24I GRGCYC 1 cut(s) 141
Eco53kI GAGCTC 1 cut(s) 139
Eco88I CYCGRG 1 cut(s) 95
EcoICRI GAGCTC 1 cut(s) 139
EcoT22I ATGCAT 1 cut(s) 152
EcoT38I GRGCYC 1 cut(s) 141
FaeI CATG 1 cut(s) 108
FaiI YATR 3 cut(s) 106, 111, 217
FatI CATG 1 cut(s) 104
FokI GGATG 1 cut(s) 40
FriOI GRGCYC 1 cut(s) 141
GlaI GCGC 1 cut(s) 181
GsuI CTGGAG 1 cut(s) 125
HhaI GCGC 1 cut(s) 182
Hin1II CATG 1 cut(s) 108
Hin6I GCGC 1 cut(s) 180
HinP1I GCGC 1 cut(s) 180
HinfI GANTC 3 cut(s) 45, 122, 229
Hpy166II GTNNAC 1 cut(s) 77
Hpy188I TCNGA 1 cut(s) 44
Hpy188III TCNNGA 2 cut(s) 142, 155
Hpy8I GTNNAC 1 cut(s) 77
HpyCH4III ACNGT 1 cut(s) 64
HpyCH4V TGCA 6 cut(s) 15, 77, 150, 192, 213, 225
Hsp92II CATG 1 cut(s) 108
HspAI GCGC 1 cut(s) 180
KspI CCGCGG 1 cut(s) 70
Kzo9I GATC 1 cut(s) 90
LmnI GCTCC 2 cut(s) 144, 167
LpnPI CCDG 5 cut(s) 25, 140, 155, 162, 168
LweI GCATC 2 cut(s) 17, 62
MalI GATC 1 cut(s) 92
MboI GATC 1 cut(s) 90
MboII GAAGA 1 cut(s) 20
MflI RGATCY 1 cut(s) 90
MhlI GDGCHC 3 cut(s) 79, 102, 141
MlyI GAGTC 1 cut(s) 131
MmeI TCCRAC 1 cut(s) 22
MnlI CCTC 3 cut(s) 32, 67, 243
Mph1103I ATGCAT 1 cut(s) 152
MspA1I CMGCKG 1 cut(s) 69
Mva1269I GAATGC 2 cut(s) 150, 164
MvnI CGCG 2 cut(s) 69, 83
NdeII GATC 1 cut(s) 90
NlaIII CATG 1 cut(s) 108
NlaIV GGNNCC 1 cut(s) 92
NsiI ATGCAT 1 cut(s) 152
PctI GAATGC 2 cut(s) 150, 164
PfeI GAWTC 2 cut(s) 45, 229
PleI GAGTC 1 cut(s) 130
PpsI GAGTC 1 cut(s) 130
Psp124BI GAGCTC 1 cut(s) 141
PspN4I GGNNCC 1 cut(s) 92
PsuI RGATCY 1 cut(s) 90
SacI GAGCTC 1 cut(s) 141
SacII CCGCGG 1 cut(s) 70
Sau3AI GATC 1 cut(s) 90
SchI GAGTC 1 cut(s) 131
SduI GDGCHC 3 cut(s) 79, 102, 141
SetI ASST 1 cut(s) 141
SfaNI GCATC 2 cut(s) 17, 62
Sfr303I CCGCGG 1 cut(s) 70
SgrBI CCGCGG 1 cut(s) 70
SsiI CCGC 2 cut(s) 67, 69
SstI GAGCTC 1 cut(s) 141
TaaI ACNGT 1 cut(s) 64
TfiI GAWTC 2 cut(s) 45, 229
TspDTI ATGAA 1 cut(s) 17
VneI GTGCAC 1 cut(s) 75
Zsp2I ATGCAT 1 cut(s) 152
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.