Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb6

Orthogroup ID

OG0017335

Physical Location & Seq

Genomic Coordinates Forward (+)

16690818 .. 16691984

Gene Structure 1167 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_6g22940.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 519 bp

ATGGCTTCTTCTTGCCGGATTTTCGTAGGGAACATACCTTACAACGCGACCGAGGGGCAGGTCAAGGCTCTCTGCGAGGAGGTCGGCCCTGTTGTCTCTTTTCGAATCGTTACCGACAAAGACACCGGGAAGCCCATGGGTTTCGGGTTCTGCGAGTACAGGGACGAATCCACGGCGTTTAGTGCCCTGCGCAATCTTCAGGACTGCGAACTCAATGGCCGCCGTTTGAAGGTCAATTTCGCTGCTAATGAGAAATCCAATCATCACCCCATTGGTCTGCAGGCGGCTGTTGATGCGGCTGCCACGATGGGGTTGGCTAGTGATCGCTTTGACTGTGTATCTCTCCAAAATGTCGAGGAATCAGTTGGCCCAGATGGTCTCAGAGATGAAGGGAATTGCGGTAGGGAACAAGGAGATGGCTCAGGAGTTGTTGCTTGCGAGGCCACAGCTGAACAGGGCTCTGCTTCAAGCACAGATCATGCTTGGAATGGTCACACCTCAAATGATGGAGAAGGCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003729 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005847 GO:0005849 GO:0006139 GO:0006379 GO:0006396 GO:0006397 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009987 GO:0010467 GO:0016070 GO:0016071 GO:0016604 GO:0031123 GO:0031124 GO:0031974 GO:0031981 GO:0032991 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0044237 GO:0044238 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044451 GO:0044464 GO:0046483 GO:0070013 GO:0071704 GO:0071920 GO:0090304 GO:0090305 GO:0090501 GO:0097159 GO:0098787 GO:0098789 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

ko03015 map03015

Pfam Domains

Protein Families

CSTF2_hinge CSTF_C RRM_1

Protein Analysis

173

Amino Acids

18.18

Weight (kDa)

4.63

Isoelectric Point (pI)

29.49

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
RRM_1	PF00076	7 - 77	9.6e-20	RNA recognition motif

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0017335)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_6g22940 FvH4_6g23390
rosa_chinensis	RchiOBHm_Chr3g0481441
rosa_laevigata	RLG00000023400
rosa_multiflora	Rmu_sc0000064.1_g000026 Rmu_sc0021886.1_g000005
rosa_roxburghii	Rroxscaffold_6G00400450
rosa_rugosa	Rorug03G0191800
rosa_samantha	Rh3AG242700 Rh3BG277700 Rh3CG272700 Rh3DG269700
rosa_wichuraiana	Rw3G021690

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	191
Acc36I	ACCTGC	1 cut(s)	49
AccII	CGCG	1 cut(s)	47
AciI	CCGC	4 cut(s)	220, 284, 296, 399
AcoI	YGGCCR	1 cut(s)	217
AcuI	CTGAAG	1 cut(s)	182
AfaI	GTAC	1 cut(s)	158
AfiI	CCNNNNNNNGG	2 cut(s)	229, 309
AgsI	TTSAA	2 cut(s)	229, 468
AluBI	AGCT	1 cut(s)	449
AluI	AGCT	1 cut(s)	449
Alw26I	GTCTC	2 cut(s)	100, 383
AoxI	GGCC	4 cut(s)	85, 217, 367, 441
ApeKI	GCWGC	2 cut(s)	242, 299
AspLEI	GCGC	1 cut(s)	192
AspS9I	GGNCC	2 cut(s)	86, 368
AsuC2I	CCSGG	1 cut(s)	127
AsuHPI	GGTGA	1 cut(s)	257
AsuII	TTCGAA	1 cut(s)	103
BaeGI	GKGCMC	1 cut(s)	187
BanII	GRGCYC	1 cut(s)	461
BbvI	GCAGC	2 cut(s)	229, 286
BccI	CCATC	4 cut(s)	301, 368, 410, 500
BceAI	ACGGC	2 cut(s)	189, 207
BcnI	CCSGG	1 cut(s)	127
BcoDI	GTCTC	2 cut(s)	100, 383
BfaI	CTAG	1 cut(s)	318
BfmI	CTRYAG	1 cut(s)	278
BfuAI	ACCTGC	1 cut(s)	49
BisI	GCNGC	5 cut(s)	220, 243, 285, 297, 300
BlsI	GCNGC	5 cut(s)	221, 244, 286, 298, 301
Bme1390I	CCNGG	1 cut(s)	127
BmgT120I	GGNCC	2 cut(s)	86, 368
BmrFI	CCNGG	1 cut(s)	127
BmsI	GCATC	1 cut(s)	283
Bpu10I	CCTNAGC	1 cut(s)	421
Bpu14I	TTCGAA	1 cut(s)	103
BpuMI	CCSGG	1 cut(s)	127
BsaI	GGTCTC	1 cut(s)	383
BsaJI	CCNNGG	3 cut(s)	51, 135, 171
Bsc4I	CCNNNNNNNGG	2 cut(s)	229, 309
BseDI	CCNNGG	3 cut(s)	51, 135, 171
BseLI	CCNNNNNNNGG	2 cut(s)	229, 309
BseMII	CTCAG	2 cut(s)	394, 435
BseRI	GAGGAG	1 cut(s)	92
BseSI	GKGCMC	1 cut(s)	187
BseXI	GCAGC	2 cut(s)	229, 286
Bsh1236I	CGCG	1 cut(s)	47
Bsh1285I	CGRYCG	1 cut(s)	51
BshFI	GGCC	4 cut(s)	87, 219, 369, 443
BsiEI	CGRYCG	1 cut(s)	51
BsiSI	CCGG	2 cut(s)	16, 126
BslFI	GGGAC	1 cut(s)	176
BslI	CCNNNNNNNGG	2 cut(s)	229, 309
BsmAI	GTCTC	2 cut(s)	100, 383
BsmFI	GGGAC	1 cut(s)	176
BsnI	GGCC	4 cut(s)	87, 219, 369, 443
Bso31I	GGTCTC	1 cut(s)	383
Bsp119I	TTCGAA	1 cut(s)	103
Bsp1286I	GDGCHC	2 cut(s)	187, 461
Bsp143I	GATC	2 cut(s)	322, 475
Bsp19I	CCATGG	1 cut(s)	135
BspACI	CCGC	4 cut(s)	220, 284, 296, 399
BspANI	GGCC	4 cut(s)	87, 219, 369, 443
BspCNI	CTCAG	2 cut(s)	393, 434
BspFNI	CGCG	1 cut(s)	47
BspMAI	CTGCAG	1 cut(s)	282
BspMI	ACCTGC	1 cut(s)	49
BspT104I	TTCGAA	1 cut(s)	103
BspTNI	GGTCTC	1 cut(s)	383
BssECI	CCNNGG	3 cut(s)	51, 135, 171
BssMI	GATC	2 cut(s)	322, 475
BssT1I	CCWWGG	1 cut(s)	135
Bst4CI	ACNGT	1 cut(s)	335
BstBI	TTCGAA	1 cut(s)	103
BstC8I	GCNNGC	2 cut(s)	282, 436
BstDEI	CTNAG	2 cut(s)	380, 421
BstDSI	CCRYGG	2 cut(s)	135, 171
BstFNI	CGCG	1 cut(s)	47
BstHHI	GCGC	1 cut(s)	192
BstKTI	GATC	2 cut(s)	325, 478
BstMAI	GTCTC	2 cut(s)	100, 383
BstMBI	GATC	2 cut(s)	322, 475
BstMCI	CGRYCG	1 cut(s)	51
BstMWI	GCNNNNNNNGC	3 cut(s)	182, 293, 440
BstSCI	CCNGG	1 cut(s)	125
BstSFI	CTRYAG	1 cut(s)	278
BstSLI	GKGCMC	1 cut(s)	187
BstUI	CGCG	1 cut(s)	47
BstV1I	GCAGC	2 cut(s)	229, 286
BsuRI	GGCC	4 cut(s)	87, 219, 369, 443
BtgI	CCRYGG	2 cut(s)	135, 171
BveI	ACCTGC	1 cut(s)	49
Cac8I	GCNNGC	2 cut(s)	282, 436
CfoI	GCGC	1 cut(s)	192
Cfr13I	GGNCC	2 cut(s)	86, 368
Csp6I	GTAC	1 cut(s)	157
CviAII	CATG	2 cut(s)	136, 479
CviQI	GTAC	1 cut(s)	157
DdeI	CTNAG	2 cut(s)	380, 421
DpnI	GATC	2 cut(s)	324, 477
DpnII	GATC	2 cut(s)	322, 475
EaeI	YGGCCR	1 cut(s)	217
Eco130I	CCWWGG	1 cut(s)	135
Eco24I	GRGCYC	1 cut(s)	461
Eco31I	GGTCTC	1 cut(s)	383
Eco57I	CTGAAG	1 cut(s)	182
EcoT14I	CCWWGG	1 cut(s)	135
EcoT38I	GRGCYC	1 cut(s)	461
ErhI	CCWWGG	1 cut(s)	135
FaeI	CATG	2 cut(s)	139, 482
FaiI	YATR	3 cut(s)	35, 137, 480
FaqI	GGGAC	1 cut(s)	176
FatI	CATG	2 cut(s)	135, 478
Fnu4HI	GCNGC	5 cut(s)	220, 243, 285, 297, 300
FriOI	GRGCYC	1 cut(s)	461
Fsp4HI	GCNGC	5 cut(s)	220, 243, 285, 297, 300
FspBI	CTAG	1 cut(s)	318
FspI	TGCGCA	1 cut(s)	191
GlaI	GCGC	1 cut(s)	191
GluI	GCNGC	5 cut(s)	220, 243, 285, 297, 300
HaeIII	GGCC	4 cut(s)	87, 219, 369, 443
HapII	CCGG	2 cut(s)	16, 126
HhaI	GCGC	1 cut(s)	192
Hin1II	CATG	2 cut(s)	139, 482
Hin6I	GCGC	1 cut(s)	190
HinP1I	GCGC	1 cut(s)	190
HinfI	GANTC	3 cut(s)	105, 167, 359
HpaII	CCGG	2 cut(s)	16, 126
HphI	GGTGA	1 cut(s)	257
Hpy188I	TCNGA	1 cut(s)	383
Hpy188III	TCNNGA	2 cut(s)	200, 423
HpyAV	CCTTC	3 cut(s)	223, 383, 506
HpyCH4III	ACNGT	1 cut(s)	335
HpyCH4V	TGCA	1 cut(s)	280
HpyF10VI	GCNNNNNNNGC	3 cut(s)	182, 293, 440
HpyF3I	CTNAG	2 cut(s)	380, 421
Hsp92II	CATG	2 cut(s)	139, 482
HspAI	GCGC	1 cut(s)	190
Kzo9I	GATC	2 cut(s)	322, 475
Lsp1109I	GCAGC	2 cut(s)	229, 286
LweI	GCATC	1 cut(s)	283
MaeI	CTAG	1 cut(s)	318
MaeIII	GTNAC	2 cut(s)	109, 491
MalI	GATC	2 cut(s)	324, 477
MboI	GATC	2 cut(s)	322, 475
MboII	GAAGA	1 cut(s)	188
MhlI	GDGCHC	2 cut(s)	187, 461
MluCI	AATT	2 cut(s)	235, 394
MnlI	CCTC	6 cut(s)	46, 70, 73, 349, 433, 508
MspA1I	CMGCKG	1 cut(s)	449
MspI	CCGG	2 cut(s)	16, 126
MspR9I	CCNGG	1 cut(s)	127
MvnI	CGCG	1 cut(s)	47
MwoI	GCNNNNNNNGC	3 cut(s)	182, 293, 440
NciI	CCSGG	1 cut(s)	127
NcoI	CCATGG	1 cut(s)	135
NdeII	GATC	2 cut(s)	322, 475
NlaIII	CATG	2 cut(s)	139, 482
NmuCI	GTSAC	1 cut(s)	491
NsbI	TGCGCA	1 cut(s)	191
NspV	TTCGAA	1 cut(s)	103
PcsI	WCGNNNNNNNCGW	1 cut(s)	150
PfeI	GAWTC	3 cut(s)	105, 167, 359
PkrI	GCNGC	5 cut(s)	221, 244, 286, 298, 301
PspPI	GGNCC	2 cut(s)	86, 368
PsrI	GAACNNNNNNTAC	2 cut(s)	23, 55
PstI	CTGCAG	1 cut(s)	282
PvuII	CAGCTG	1 cut(s)	449
RsaI	GTAC	1 cut(s)	158
RsaNI	GTAC	1 cut(s)	157
SatI	GCNGC	5 cut(s)	220, 243, 285, 297, 300
Sau3AI	GATC	2 cut(s)	322, 475
Sau96I	GGNCC	2 cut(s)	86, 368
ScrFI	CCNGG	1 cut(s)	127
SduI	GDGCHC	2 cut(s)	187, 461
SetI	ASST	6 cut(s)	40, 63, 84, 234, 451, 500
SfaNI	GCATC	1 cut(s)	283
SfcI	CTRYAG	1 cut(s)	278
SfuI	TTCGAA	1 cut(s)	103
Sse9I	AATT	2 cut(s)	235, 394
SsiI	CCGC	4 cut(s)	220, 284, 296, 399
SspMI	CTAG	1 cut(s)	318
StyD4I	CCNGG	1 cut(s)	125
StyI	CCWWGG	1 cut(s)	135
TaaI	ACNGT	1 cut(s)	335
TaqI	TCGA	2 cut(s)	103, 354
TaqII	GACCGA	1 cut(s)	65
TasI	AATT	2 cut(s)	235, 394
TatI	WGTACW	1 cut(s)	156
TauI	GCSGC	3 cut(s)	222, 287, 299
TfiI	GAWTC	3 cut(s)	105, 167, 359
TseFI	GTSAC	1 cut(s)	491
TseI	GCWGC	2 cut(s)	242, 299
Tsp45I	GTSAC	1 cut(s)	491
TspDTI	ATGAA	1 cut(s)	402
XcmI	CCANNNNNNNNNTGG	1 cut(s)	310
XspI	CTAG	1 cut(s)	318

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.