Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0021886.1

Orthogroup ID

OG0017335

Physical Location & Seq

Genomic Coordinates Reverse (-)

26787 .. 27692

Gene Structure 906 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0021886.1_g000005.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 906 bp

atggcttcttctcgccgcattttcgttgggaacatcccttatgatgccaccgagcaacaggtcaaggctctctgcgaggaggttggccctgttgtgactttcagaatggttacggataaagacaccgggaagccaaagggttttgggttctgtgagtacagggatgaagcgacggcgtttagtgctctgcgaaatcttcaggattgtgagctcaatggccggcgtttgaaggttaattttgctgctaatgataaggccaatcatcagccgattggtctccaagcagccgttgatgcagccgccgcaatggcgggagctctaggtggttctcagcagcaggcattggctaatgatcctttgacagtccatctgtccaaaatgtcgaggaatcagttggcgcaaatggtctcggagatgaagggaattgctgtggaaaatcaggagatggctcgggagctgttgcttgcaaatccgcagttaaacagggctctgcttcaggcacaaatgatgctaggaatggtcacaccacaaatgttggcacaggttaatatgaggccaatgcctcccttcaataatggccagccgcagcagcagcagaggctcgttcccaaatcggaaccagtacagatctcggagcctcagactctggtcaccccacaaatgatgcaaaagaggccaatgcctccattgaatatgggccagcagcagcaagttccaaaatcagaaccagtgcaaatctctgagcctcagattcttccaacgggggtggaccctgctttgttgcaacaagttttgagcctacctcccgaaacggtggcttcattggcacccgaactgcgacaacaggtcattcaactccagcagatgtataggcaagatcagaggatcgcttgcagcagtggatga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003729 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005847 GO:0005849 GO:0006139 GO:0006379 GO:0006396 GO:0006397 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009987 GO:0010467 GO:0016070 GO:0016071 GO:0016604 GO:0031123 GO:0031124 GO:0031974 GO:0031981 GO:0032991 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0044237 GO:0044238 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044451 GO:0044464 GO:0046483 GO:0070013 GO:0071704 GO:0071920 GO:0090304 GO:0090305 GO:0090501 GO:0097159 GO:0098787 GO:0098789 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

ko03015 map03015

Pfam Domains

Protein Families

CSTF2_hinge CSTF_C RRM_1

Protein Analysis

301

Amino Acids

33.13

Weight (kDa)

7.65

Isoelectric Point (pI)

60.41

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0017335)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_6g22940 FvH4_6g23390
rosa_chinensis	RchiOBHm_Chr3g0481441
rosa_laevigata	RLG00000023400
rosa_multiflora	Rmu_sc0000064.1_g000026 Rmu_sc0021886.1_g000005
rosa_roxburghii	Rroxscaffold_6G00400450
rosa_rugosa	Rorug03G0191800
rosa_samantha	Rh3AG242700 Rh3BG277700 Rh3CG272700 Rh3DG269700
rosa_wichuraiana	Rw3G021690

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	826
AciI	CCGC	6 cut(s)	16, 300, 303, 311, 473, 584
AclWI	GGATC	2 cut(s)	347, 893
AcoI	YGGCCR	2 cut(s)	217, 577
AcuI	CTGAAG	2 cut(s)	182, 479
AfaI	GTAC	2 cut(s)	158, 624
AgsI	TTSAA	4 cut(s)	229, 571, 691, 854
AhdI	GACNNNNNGTC	1 cut(s)	845
AluBI	AGCT	3 cut(s)	211, 317, 457
AluI	AGCT	3 cut(s)	211, 317, 457
Alw21I	GWGCWC	3 cut(s)	187, 213, 319
Alw26I	GTCTC	2 cut(s)	281, 412
AlwI	GGATC	2 cut(s)	347, 893
AlwNI	CAGNNNCTG	1 cut(s)	646
Ama87I	CYCGRG	1 cut(s)	450
AoxI	GGCC	7 cut(s)	85, 217, 255, 554, 577, 674, 697
AspLEI	GCGC	1 cut(s)	400
AspS9I	GGNCC	3 cut(s)	86, 697, 769
AsuC2I	CCSGG	1 cut(s)	127
AsuHPI	GGTGA	1 cut(s)	643
AvaI	CYCGRG	1 cut(s)	450
AvaII	GGWCC	1 cut(s)	769
BalI	TGGCCA	1 cut(s)	579
BanI	GGYRCC	1 cut(s)	826
BanII	GRGCYC	3 cut(s)	213, 319, 490
Bbv12I	GWGCWC	3 cut(s)	187, 213, 319
BbvI	GCAGC	9 cut(s)	229, 296, 308, 346, 598, 601, 604, 715, 718
BccI	CCATC	2 cut(s)	375, 439
BceAI	ACGGC	2 cut(s)	189, 272
BcnI	CCSGG	1 cut(s)	127
BcoDI	GTCTC	2 cut(s)	281, 412
BfaI	CTAG	2 cut(s)	320, 512
BglI	GCCNNNNNGGC	1 cut(s)	308
BglII	AGATCT	1 cut(s)	627
Bme1390I	CCNGG	1 cut(s)	127
Bme18I	GGWCC	1 cut(s)	769
BmeRI	GACNNNNNGTC	1 cut(s)	845
BmeT110I	CYCGRG	1 cut(s)	450
BmgT120I	GGNCC	3 cut(s)	86, 697, 769
BmiI	GGNNCC	4 cut(s)	618, 636, 771, 828
BmrFI	CCNGG	1 cut(s)	127
BmsI	GCATC	4 cut(s)	34, 283, 498, 654
BoxI	GACNNNNGTC	1 cut(s)	647
BplI	GAGNNNNNCTC	2 cut(s)	787, 819
BpmI	CTGGAG	1 cut(s)	842
BpuMI	CCSGG	1 cut(s)	127
BsaI	GGTCTC	2 cut(s)	281, 412
Bse118I	RCCGGY	1 cut(s)	219
Bse1I	ACTGG	2 cut(s)	620, 728
Bse3DI	GCAATG	1 cut(s)	312
BseGI	GGATG	2 cut(s)	33, 169
BseMI	GCAATG	1 cut(s)	312
BseMII	CTCAG	4 cut(s)	344, 653, 732, 761
BseNI	ACTGG	2 cut(s)	620, 728
BseRI	GAGGAG	1 cut(s)	92
BseXI	GCAGC	9 cut(s)	229, 296, 308, 346, 598, 601, 604, 715, 718
BshFI	GGCC	7 cut(s)	87, 219, 257, 556, 579, 676, 699
BshNI	GGYRCC	1 cut(s)	826
BsiHKAI	GWGCWC	3 cut(s)	187, 213, 319
BsiHKCI	CYCGRG	1 cut(s)	450
BsiSI	CCGG	2 cut(s)	126, 220
BsmAI	GTCTC	2 cut(s)	281, 412
BsnI	GGCC	7 cut(s)	87, 219, 257, 556, 579, 676, 699
Bso31I	GGTCTC	2 cut(s)	281, 412
BsoBI	CYCGRG	1 cut(s)	450
Bsp1286I	GDGCHC	4 cut(s)	187, 213, 319, 490
Bsp143I	GATC	4 cut(s)	352, 627, 877, 885
BspACI	CCGC	6 cut(s)	16, 300, 303, 311, 473, 584
BspANI	GGCC	7 cut(s)	87, 219, 257, 556, 579, 676, 699
BspCNI	CTCAG	4 cut(s)	343, 652, 733, 760
BspLI	GGNNCC	4 cut(s)	618, 636, 771, 828
BspPI	GGATC	2 cut(s)	347, 893
BspT107I	GGYRCC	1 cut(s)	826
BspTNI	GGTCTC	2 cut(s)	281, 412
BsrDI	GCAATG	1 cut(s)	312
BsrFI	RCCGGY	1 cut(s)	219
BsrI	ACTGG	2 cut(s)	620, 728
BssAI	RCCGGY	1 cut(s)	219
BssMI	GATC	4 cut(s)	352, 627, 877, 885
Bst4CI	ACNGT	2 cut(s)	364, 814
BstC8I	GCNNGC	6 cut(s)	221, 339, 465, 581, 701, 892
BstDEI	CTNAG	4 cut(s)	330, 639, 741, 747
BstEII	GGTNACC	1 cut(s)	649
BstF5I	GGATG	2 cut(s)	33, 169
BstHHI	GCGC	1 cut(s)	400
BstKTI	GATC	4 cut(s)	355, 630, 880, 888
BstMAI	GTCTC	2 cut(s)	281, 412
BstMBI	GATC	4 cut(s)	352, 627, 877, 885
BstMWI	GCNNNNNNNGC	9 cut(s)	182, 293, 302, 308, 589, 592, 598, 673, 824
BstPAI	GACNNNNGTC	1 cut(s)	647
BstPI	GGTNACC	1 cut(s)	649
BstSCI	CCNGG	1 cut(s)	125
BstV1I	GCAGC	9 cut(s)	229, 296, 308, 346, 598, 601, 604, 715, 718
BstX2I	RGATCY	1 cut(s)	627
BstYI	RGATCY	1 cut(s)	627
BsuRI	GGCC	7 cut(s)	87, 219, 257, 556, 579, 676, 699
BtsCI	GGATG	2 cut(s)	33, 169
BtsI	GCAGTG	1 cut(s)	904
BtsIMutI	CAGTG	2 cut(s)	735, 904
Cac8I	GCNNGC	6 cut(s)	221, 339, 465, 581, 701, 892
CaiI	CAGNNNCTG	1 cut(s)	646
CfoI	GCGC	1 cut(s)	400
Cfr10I	RCCGGY	1 cut(s)	219
Cfr13I	GGNCC	3 cut(s)	86, 697, 769
Csp6I	GTAC	2 cut(s)	157, 623
CspCI	CAANNNNNGTGG	4 cut(s)	516, 551, 747, 782
CviQI	GTAC	2 cut(s)	157, 623
DdeI	CTNAG	4 cut(s)	330, 639, 741, 747
DpnI	GATC	4 cut(s)	354, 629, 879, 887
DpnII	GATC	4 cut(s)	352, 627, 877, 885
DriI	GACNNNNNGTC	1 cut(s)	845
EaeI	YGGCCR	2 cut(s)	217, 577
Eam1105I	GACNNNNNGTC	1 cut(s)	845
Ecl136II	GAGCTC	2 cut(s)	211, 317
Eco24I	GRGCYC	3 cut(s)	213, 319, 490
Eco31I	GGTCTC	2 cut(s)	281, 412
Eco47I	GGWCC	1 cut(s)	769
Eco53kI	GAGCTC	2 cut(s)	211, 317
Eco57I	CTGAAG	2 cut(s)	182, 479
Eco88I	CYCGRG	1 cut(s)	450
Eco91I	GGTNACC	1 cut(s)	649
EcoICRI	GAGCTC	2 cut(s)	211, 317
EcoO65I	GGTNACC	1 cut(s)	649
EcoT38I	GRGCYC	3 cut(s)	213, 319, 490
FaiI	YATR	4 cut(s)	42, 551, 695, 870
FauI	CCCGC	1 cut(s)	304
FokI	GGATG	2 cut(s)	20, 176
FriOI	GRGCYC	3 cut(s)	213, 319, 490
FspBI	CTAG	2 cut(s)	320, 512
GlaI	GCGC	1 cut(s)	399
GsuI	CTGGAG	1 cut(s)	842
HaeIII	GGCC	7 cut(s)	87, 219, 257, 556, 579, 676, 699
HapII	CCGG	2 cut(s)	126, 220
HhaI	GCGC	1 cut(s)	400
Hin6I	GCGC	1 cut(s)	398
HinP1I	GCGC	1 cut(s)	398
HinfI	GANTC	3 cut(s)	388, 643, 751
HpaII	CCGG	2 cut(s)	126, 220
HphI	GGTGA	1 cut(s)	643
Hpy166II	GTNNAC	1 cut(s)	769
Hpy188I	TCNGA	9 cut(s)	104, 412, 616, 634, 642, 724, 742, 750, 882
Hpy188III	TCNNGA	4 cut(s)	200, 440, 452, 806
Hpy8I	GTNNAC	1 cut(s)	769
Hpy99I	CGWCG	1 cut(s)	175
HpyAV	CCTTC	3 cut(s)	223, 412, 577
HpyCH4III	ACNGT	2 cut(s)	364, 814
HpyCH4V	TGCA	6 cut(s)	296, 467, 667, 733, 784, 894
HpyF10VI	GCNNNNNNNGC	9 cut(s)	182, 293, 302, 308, 589, 592, 598, 673, 824
HpyF3I	CTNAG	4 cut(s)	330, 639, 741, 747
HspAI	GCGC	1 cut(s)	398
KroI	GCCGGC	1 cut(s)	219
KroNI	GCCGGC	1 cut(s)	221
Kzo9I	GATC	4 cut(s)	352, 627, 877, 885
LmnI	GCTCC	3 cut(s)	314, 454, 634
Lsp1109I	GCAGC	9 cut(s)	229, 296, 308, 346, 598, 601, 604, 715, 718
LweI	GCATC	4 cut(s)	34, 283, 498, 654
MaeI	CTAG	2 cut(s)	320, 512
MaeIII	GTNAC	4 cut(s)	94, 109, 520, 649
MalI	GATC	4 cut(s)	354, 629, 879, 887
MboI	GATC	4 cut(s)	352, 627, 877, 885
MboII	GAAGA	2 cut(s)	188, 746
MflI	RGATCY	1 cut(s)	627
MhlI	GDGCHC	4 cut(s)	187, 213, 319, 490
MlsI	TGGCCA	1 cut(s)	579
MluCI	AATT	2 cut(s)	235, 423
MluNI	TGGCCA	1 cut(s)	579
MlyI	GAGTC	1 cut(s)	637
MmeI	TCCRAC	1 cut(s)	782
Mox20I	TGGCCA	1 cut(s)	579
MroNI	GCCGGC	1 cut(s)	219
MscI	TGGCCA	1 cut(s)	579
MseI	TTAA	3 cut(s)	234, 479, 546
Msp20I	TGGCCA	1 cut(s)	579
MspI	CCGG	2 cut(s)	126, 220
MspR9I	CCNGG	1 cut(s)	127
MwoI	GCNNNNNNNGC	9 cut(s)	182, 293, 302, 308, 589, 592, 598, 673, 824
NaeI	GCCGGC	1 cut(s)	221
NciI	CCSGG	1 cut(s)	127
NdeII	GATC	4 cut(s)	352, 627, 877, 885
NgoMIV	GCCGGC	1 cut(s)	219
NlaIV	GGNNCC	4 cut(s)	618, 636, 771, 828
NmuCI	GTSAC	3 cut(s)	94, 520, 649
PdiI	GCCGGC	1 cut(s)	221
PfeI	GAWTC	2 cut(s)	388, 751
PleI	GAGTC	1 cut(s)	637
PpsI	GAGTC	1 cut(s)	637
PshAI	GACNNNNGTC	1 cut(s)	647
Psp124BI	GAGCTC	2 cut(s)	213, 319
PspEI	GGTNACC	1 cut(s)	649
PspN4I	GGNNCC	4 cut(s)	618, 636, 771, 828
PspPI	GGNCC	3 cut(s)	86, 697, 769
PstNI	CAGNNNCTG	1 cut(s)	646
PsuI	RGATCY	1 cut(s)	627
RsaI	GTAC	2 cut(s)	158, 624
RsaNI	GTAC	2 cut(s)	157, 623
SacI	GAGCTC	2 cut(s)	213, 319
SaqAI	TTAA	3 cut(s)	234, 479, 546
Sau3AI	GATC	4 cut(s)	352, 627, 877, 885
Sau96I	GGNCC	3 cut(s)	86, 697, 769
SchI	GAGTC	1 cut(s)	637
ScrFI	CCNGG	1 cut(s)	127
SduI	GDGCHC	4 cut(s)	187, 213, 319, 490
SfaNI	GCATC	4 cut(s)	34, 283, 498, 654
SinI	GGWCC	1 cut(s)	769
Sse9I	AATT	2 cut(s)	235, 423
SsiI	CCGC	6 cut(s)	16, 300, 303, 311, 473, 584
SspMI	CTAG	2 cut(s)	320, 512
SstI	GAGCTC	2 cut(s)	213, 319
StyD4I	CCNGG	1 cut(s)	125
TaaI	ACNGT	2 cut(s)	364, 814
TaqI	TCGA	1 cut(s)	383
TasI	AATT	2 cut(s)	235, 423
TatI	WGTACW	2 cut(s)	156, 622
TauI	GCSGC	4 cut(s)	18, 302, 305, 586
TfiI	GAWTC	2 cut(s)	388, 751
Tru1I	TTAA	3 cut(s)	234, 479, 546
Tru9I	TTAA	3 cut(s)	234, 479, 546
TscAI	CASTG	2 cut(s)	735, 904
TseFI	GTSAC	3 cut(s)	94, 520, 649
Tsp45I	GTSAC	3 cut(s)	94, 520, 649
TspDTI	ATGAA	3 cut(s)	180, 431, 810
TspGWI	ACGGA	1 cut(s)	128
TspRI	CASTG	2 cut(s)	735, 904
VpaK11BI	GGWCC	1 cut(s)	769
XspI	CTAG	2 cut(s)	320, 512

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.