Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000003

Orthogroup ID

OG0004677

Physical Location & Seq

Genomic Coordinates Reverse (-)

16865154 .. 16868673

Gene Structure 3520 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug03G0191800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 936 bp

ATGGAGGACGGAGCTCTTTCAAAACCCGCGGCGGTGCTGGCTTGCGCCGCCATGGCTTCATTCTTCGTCGGGATTCTCTACGCCCCCACTTTAATTCTTCGTCTTCGTCCTCCTTCTTCCCACACTAACTTTTTGATCCGACGGTTCATATGCGCCGGAGTTTCCTCCCTCGTCTCCGTCGTCGTCTCTGCTCTGCTCCTCCCCATTAAAAGCGGAGAAGCATCGGTTTTGTTAGGTGTATATGGCATACGGACTGATCATATTTGGCAAGCCCTGGTCTTTCCTCTATCATTGACGGCGCTTATGTACGCCGGATCCTTGACATTCATGTCTCTATTATTGATTCATTCGTTGAGGGAAGACATGAATTGTAGTGGAGGGCTTTCGTTTGACTATATCAAAAGTATCTCACTGGACGCTGCTGCCTCTTTGCGTTCAATTTCTTCCAGTGTTATGCATTGGCGTAATTATGTTGTGGCTCCAGTTACGGAAGAGTTGGTGTTTAGAGCATGCATGATACCATTGCTTCTCTGCGCAGGATTCCAAAAAAACACAGTCATATTTTTATGCCCTATATTCTTCAGTTTGGCTCATTTGAACCATCTAATGGATGTCTATATCAAACAACAGAATAACTGGACCAAAGCCTGCATGATTATAGGTCTCCAGCTTGGATATACTGTGGTCTTTGGCTCATATGCATCTTTTCTCTTCATTCAAACAGGACATTTTATTGCTCCCGTAGTTGCTCACATGTTTTGCAATATTATGGGATTGCCAGTGCTAGTTTCACCAGGGAAAGGGATAATAAGTGTGGCATTTATAGCTGGAGTGCTGGGGTTCCTTTGGTTGCTTTTTCCTATTACCAACTCGGGTTTGTACAATGACAGAACAGATAATTGTAGATGTTGGCAGGGATATTGTTCTGGGAACTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003729 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005847 GO:0005849 GO:0006139 GO:0006379 GO:0006396 GO:0006397 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009987 GO:0010467 GO:0016070 GO:0016071 GO:0016604 GO:0031123 GO:0031124 GO:0031974 GO:0031981 GO:0032991 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0044237 GO:0044238 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044451 GO:0044464 GO:0046483 GO:0070013 GO:0071704 GO:0071920 GO:0090304 GO:0090305 GO:0090501 GO:0097159 GO:0098787 GO:0098789 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

ko03015 map03015

Pfam Domains

Protein Families

CSTF2_hinge CSTF_C RRM_1

Protein Analysis

311

Amino Acids

33.97

Weight (kDa)

8.64

Isoelectric Point (pI)

45.33

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Rce1-like	PF02517	151 - 257	1.6e-15	Type II CAAX prenyl endopeptidase Rce1-like

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0004677)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G41880 AT2G41880 AT2G41880 AT2G41880 AT2G41880 AT2G41880 AT2G41880 AT2G41880 AT2G41880 AT3G57550 AT3G57550 AT3G57550
fragaria_vesca	FvH4_6g23440 FvH4_6g23440 FvH4_6g23440
malus_domestica	MD12G1069000.v1.1 MD14G1069300.v1.1
prunus_persica	Prupe.7G065100_v2.0.a1 Prupe.7G065100_v2.0.a1
pyrus_communis	pycom12g06050 pycom14g05740
rosa_chinensis	RchiOBHm_Chr3g0481461
rosa_laevigata	RLG00000023398
rosa_multiflora	Rmu_sc0000064.1_g000028
rosa_roxburghii	Rroxscaffold_6G00400440
rosa_rugosa	Rorug03G0191800
rosa_samantha	Rh3AG242900 Rh3BG277900 Rh3CG272900 Rh3DG269900
rosa_wichuraiana	Rw3G021700

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	328
Acc16I	TGCGCA	1 cut(s)	535
AccB7I	CCANNNNNTGG	1 cut(s)	607
AccII	CGCG	1 cut(s)	29
AciI	CCGC	5 cut(s)	27, 29, 32, 48, 213
AclWI	GGATC	3 cut(s)	130, 309, 322
AcuI	CTGAAG	1 cut(s)	565
AfaI	GTAC	2 cut(s)	308, 881
AfiI	CCNNNNNNNGG	2 cut(s)	607, 800
AflIII	ACRYGT	1 cut(s)	753
AgsI	TTSAA	4 cut(s)	21, 438, 598, 719
AjnI	CCWGG	2 cut(s)	273, 793
AluBI	AGCT	3 cut(s)	14, 670, 827
AluI	AGCT	3 cut(s)	14, 670, 827
Alw21I	GWGCWC	1 cut(s)	16
Alw26I	GTCTC	4 cut(s)	178, 190, 336, 668
AlwI	GGATC	3 cut(s)	130, 309, 322
Ama87I	CYCGRG	1 cut(s)	871
ApeKI	GCWGC	2 cut(s)	419, 422
AspLEI	GCGC	4 cut(s)	47, 155, 301, 536
AspS9I	GGNCC	1 cut(s)	639
AsuHPI	GGTGA	1 cut(s)	783
AvaI	CYCGRG	1 cut(s)	871
AvaII	GGWCC	1 cut(s)	639
BamHI	GGATCC	1 cut(s)	314
BanII	GRGCYC	1 cut(s)	16
BbsI	GAAGAC	2 cut(s)	95, 366
Bbv12I	GWGCWC	1 cut(s)	16
BbvI	GCAGC	2 cut(s)	406, 409
BccI	CCATC	1 cut(s)	609
BceAI	ACGGC	1 cut(s)	312
BciT130I	CCWGG	2 cut(s)	275, 795
BclI	TGATCA	1 cut(s)	256
BcoDI	GTCTC	4 cut(s)	178, 190, 336, 668
BfaI	CTAG	2 cut(s)	785, 934
BfoI	RGCGCY	1 cut(s)	302
BglI	GCCNNNNNGGC	1 cut(s)	53
BisI	GCNGC	4 cut(s)	30, 48, 420, 423
BlsI	GCNGC	4 cut(s)	31, 49, 421, 424
Bme1390I	CCNGG	2 cut(s)	275, 795
Bme18I	GGWCC	1 cut(s)	639
BmeT110I	CYCGRG	1 cut(s)	871
BmgT120I	GGNCC	1 cut(s)	639
BmiI	GGNNCC	3 cut(s)	316, 480, 842
BmrFI	CCNGG	2 cut(s)	275, 795
BmsI	GCATC	2 cut(s)	230, 710
BpiI	GAAGAC	2 cut(s)	95, 366
BpmI	CTGGAG	3 cut(s)	465, 650, 849
BsaI	GGTCTC	1 cut(s)	668
BsaJI	CCNNGG	4 cut(s)	27, 51, 273, 794
Bsc4I	CCNNNNNNNGG	2 cut(s)	607, 800
Bse1I	ACTGG	5 cut(s)	417, 447, 482, 641, 779
Bse3DI	GCAATG	1 cut(s)	521
BseBI	CCWGG	2 cut(s)	275, 795
BseDI	CCNNGG	4 cut(s)	27, 51, 273, 794
BseGI	GGATG	1 cut(s)	616
BseLI	CCNNNNNNNGG	2 cut(s)	607, 800
BseMI	GCAATG	1 cut(s)	521
BseNI	ACTGG	5 cut(s)	417, 447, 482, 641, 779
BseRI	GAGGAG	1 cut(s)	188
BseXI	GCAGC	2 cut(s)	406, 409
BseYI	CCCAGC	1 cut(s)	835
Bsh1236I	CGCG	1 cut(s)	29
BsiHKAI	GWGCWC	1 cut(s)	16
BsiHKCI	CYCGRG	1 cut(s)	871
BsiSI	CCGG	2 cut(s)	156, 312
BslI	CCNNNNNNNGG	2 cut(s)	607, 800
BsmAI	GTCTC	4 cut(s)	178, 190, 336, 668
BsmBI	CGTCTC	2 cut(s)	178, 190
Bso31I	GGTCTC	1 cut(s)	668
BsoBI	CYCGRG	1 cut(s)	871
Bsp1286I	GDGCHC	1 cut(s)	16
Bsp1407I	TGTACA	1 cut(s)	879
Bsp143I	GATC	3 cut(s)	135, 256, 314
Bsp19I	CCATGG	1 cut(s)	51
BspACI	CCGC	5 cut(s)	27, 29, 32, 48, 213
BspFNI	CGCG	1 cut(s)	29
BspLI	GGNNCC	3 cut(s)	316, 480, 842
BspPI	GGATC	3 cut(s)	130, 309, 322
BspTNI	GGTCTC	1 cut(s)	668
BsrDI	GCAATG	1 cut(s)	521
BsrGI	TGTACA	1 cut(s)	879
BsrI	ACTGG	5 cut(s)	417, 447, 482, 641, 779
BssECI	CCNNGG	4 cut(s)	27, 51, 273, 794
BssMI	GATC	3 cut(s)	135, 256, 314
BssT1I	CCWWGG	1 cut(s)	51
Bst2UI	CCWGG	2 cut(s)	275, 795
Bst4CI	ACNGT	3 cut(s)	144, 556, 682
Bst6I	CTCTTC	2 cut(s)	486, 716
BstAUI	TGTACA	1 cut(s)	879
BstC8I	GCNNGC	5 cut(s)	39, 43, 270, 511, 649
BstDSI	CCRYGG	2 cut(s)	27, 51
BstF5I	GGATG	1 cut(s)	616
BstFNI	CGCG	1 cut(s)	29
BstH2I	RGCGCY	1 cut(s)	302
BstHHI	GCGC	4 cut(s)	47, 155, 301, 536
BstKTI	GATC	3 cut(s)	138, 259, 317
BstMAI	GTCTC	4 cut(s)	178, 190, 336, 668
BstMBI	GATC	3 cut(s)	135, 256, 314
BstMWI	GCNNNNNNNGC	4 cut(s)	38, 47, 53, 824
BstNI	CCWGG	2 cut(s)	275, 795
BstNSI	RCATGY	2 cut(s)	513, 757
BstSCI	CCNGG	2 cut(s)	273, 793
BstUI	CGCG	1 cut(s)	29
BstV1I	GCAGC	2 cut(s)	406, 409
BstV2I	GAAGAC	2 cut(s)	95, 366
BstX2I	RGATCY	1 cut(s)	314
BstYI	RGATCY	1 cut(s)	314
BtgI	CCRYGG	2 cut(s)	27, 51
BtsCI	GGATG	1 cut(s)	616
BtsIMutI	CAGTG	3 cut(s)	410, 454, 786
Cac8I	GCNNGC	5 cut(s)	39, 43, 270, 511, 649
CfoI	GCGC	4 cut(s)	47, 155, 301, 536
Cfr13I	GGNCC	1 cut(s)	639
Cfr42I	CCGCGG	1 cut(s)	30
CseI	GACGC	1 cut(s)	425
Csp6I	GTAC	2 cut(s)	307, 880
CviAII	CATG	7 cut(s)	52, 328, 364, 510, 514, 652, 754
CviQI	GTAC	2 cut(s)	307, 880
DpnI	GATC	3 cut(s)	137, 258, 316
DpnII	GATC	3 cut(s)	135, 256, 314
DrdI	GACNNNNNNGTC	1 cut(s)	328
DseDI	GACNNNNNNGTC	1 cut(s)	328
Eam1104I	CTCTTC	2 cut(s)	486, 716
EarI	CTCTTC	2 cut(s)	486, 716
Ecl136II	GAGCTC	1 cut(s)	14
Eco130I	CCWWGG	1 cut(s)	51
Eco24I	GRGCYC	1 cut(s)	16
Eco31I	GGTCTC	1 cut(s)	668
Eco47I	GGWCC	1 cut(s)	639
Eco53kI	GAGCTC	1 cut(s)	14
Eco57I	CTGAAG	1 cut(s)	565
Eco88I	CYCGRG	1 cut(s)	871
EcoICRI	GAGCTC	1 cut(s)	14
EcoRII	CCWGG	2 cut(s)	273, 793
EcoT14I	CCWWGG	1 cut(s)	51
EcoT22I	ATGCAT	3 cut(s)	459, 515, 703
EcoT38I	GRGCYC	1 cut(s)	16
ErhI	CCWWGG	1 cut(s)	51
Esp3I	CGTCTC	2 cut(s)	178, 190
FaeI	CATG	7 cut(s)	55, 331, 367, 513, 517, 655, 757
FatI	CATG	7 cut(s)	51, 327, 363, 509, 513, 651, 753
FauI	CCCGC	1 cut(s)	34
FauNDI	CATATG	2 cut(s)	149, 697
FbaI	TGATCA	1 cut(s)	256
Fnu4HI	GCNGC	4 cut(s)	30, 48, 420, 423
FokI	GGATG	1 cut(s)	623
FriOI	GRGCYC	1 cut(s)	16
Fsp4HI	GCNGC	4 cut(s)	30, 48, 420, 423
FspBI	CTAG	2 cut(s)	785, 934
FspI	TGCGCA	1 cut(s)	535
GlaI	GCGC	4 cut(s)	46, 154, 300, 535
GluI	GCNGC	4 cut(s)	30, 48, 420, 423
GsaI	CCCAGC	1 cut(s)	839
GsuI	CTGGAG	3 cut(s)	465, 650, 849
HaeII	RGCGCY	1 cut(s)	302
HapII	CCGG	2 cut(s)	156, 312
HgaI	GACGC	1 cut(s)	425
HhaI	GCGC	4 cut(s)	47, 155, 301, 536
Hin1II	CATG	7 cut(s)	55, 331, 367, 513, 517, 655, 757
Hin6I	GCGC	4 cut(s)	45, 153, 299, 534
HinP1I	GCGC	4 cut(s)	45, 153, 299, 534
HinfI	GANTC	3 cut(s)	73, 343, 540
HpaII	CCGG	2 cut(s)	156, 312
HphI	GGTGA	1 cut(s)	783
Hpy188I	TCNGA	1 cut(s)	140
Hpy188III	TCNNGA	1 cut(s)	70
Hpy99I	CGWCG	4 cut(s)	71, 144, 182, 185
HpyAV	CCTTC	1 cut(s)	123
HpyCH4III	ACNGT	3 cut(s)	144, 556, 682
HpyCH4V	TGCA	5 cut(s)	457, 513, 651, 701, 762
HpyF10VI	GCNNNNNNNGC	4 cut(s)	38, 47, 53, 824
Hsp92II	CATG	7 cut(s)	55, 331, 367, 513, 517, 655, 757
HspAI	GCGC	4 cut(s)	45, 153, 299, 534
Ksp22I	TGATCA	1 cut(s)	256
KspI	CCGCGG	1 cut(s)	30
Kzo9I	GATC	3 cut(s)	135, 256, 314
LmnI	GCTCC	4 cut(s)	11, 201, 484, 742
Lsp1109I	GCAGC	2 cut(s)	406, 409
LweI	GCATC	2 cut(s)	230, 710
MaeI	CTAG	2 cut(s)	785, 934
MaeIII	GTNAC	1 cut(s)	484
MalI	GATC	3 cut(s)	137, 258, 316
MboI	GATC	3 cut(s)	135, 256, 314
MboII	GAAGA	9 cut(s)	55, 89, 95, 108, 371, 435, 503, 571, 703
MflI	RGATCY	1 cut(s)	314
MhlI	GDGCHC	1 cut(s)	16
MluCI	AATT	5 cut(s)	93, 367, 438, 466, 898
MmeI	TCCRAC	1 cut(s)	163
MnlI	CCTC	8 cut(s)	120, 175, 179, 209, 294, 348, 371, 436
Mph1103I	ATGCAT	3 cut(s)	459, 515, 703
MseI	TTAA	2 cut(s)	92, 207
MspA1I	CMGCKG	1 cut(s)	29
MspI	CCGG	2 cut(s)	156, 312
MspR9I	CCNGG	2 cut(s)	275, 795
MvaI	CCWGG	2 cut(s)	275, 795
MvnI	CGCG	1 cut(s)	29
MwoI	GCNNNNNNNGC	4 cut(s)	38, 47, 53, 824
NcoI	CCATGG	1 cut(s)	51
NdeI	CATATG	2 cut(s)	149, 697
NdeII	GATC	3 cut(s)	135, 256, 314
NlaIII	CATG	7 cut(s)	55, 331, 367, 513, 517, 655, 757
NlaIV	GGNNCC	3 cut(s)	316, 480, 842
NsbI	TGCGCA	1 cut(s)	535
NsiI	ATGCAT	3 cut(s)	459, 515, 703
NspI	RCATGY	2 cut(s)	513, 757
PaeI	GCATGC	1 cut(s)	513
PciI	ACATGT	1 cut(s)	753
PcsI	WCGNNNNNNNCGW	1 cut(s)	177
PfeI	GAWTC	3 cut(s)	73, 343, 540
PflMI	CCANNNNNTGG	1 cut(s)	607
PkrI	GCNGC	4 cut(s)	31, 49, 421, 424
PscI	ACATGT	1 cut(s)	753
Psp124BI	GAGCTC	1 cut(s)	16
Psp6I	CCWGG	2 cut(s)	273, 793
PspFI	CCCAGC	1 cut(s)	835
PspGI	CCWGG	2 cut(s)	273, 793
PspN4I	GGNNCC	3 cut(s)	316, 480, 842
PspPI	GGNCC	1 cut(s)	639
PsuI	RGATCY	1 cut(s)	314
RsaI	GTAC	2 cut(s)	308, 881
RsaNI	GTAC	2 cut(s)	307, 880
SacI	GAGCTC	1 cut(s)	16
SacII	CCGCGG	1 cut(s)	30
SaqAI	TTAA	2 cut(s)	92, 207
SatI	GCNGC	4 cut(s)	30, 48, 420, 423
Sau3AI	GATC	3 cut(s)	135, 256, 314
Sau96I	GGNCC	1 cut(s)	639
ScrFI	CCNGG	2 cut(s)	275, 795
SduI	GDGCHC	1 cut(s)	16
SetI	ASST	5 cut(s)	16, 238, 664, 672, 829
SfaNI	GCATC	2 cut(s)	230, 710
Sfr303I	CCGCGG	1 cut(s)	30
SgrBI	CCGCGG	1 cut(s)	30
SinI	GGWCC	1 cut(s)	639
SphI	GCATGC	1 cut(s)	513
Sse9I	AATT	5 cut(s)	93, 367, 438, 466, 898
SsiI	CCGC	5 cut(s)	27, 29, 32, 48, 213
SspI	AATATT	1 cut(s)	766
SspMI	CTAG	2 cut(s)	785, 934
SstI	GAGCTC	1 cut(s)	16
StyD4I	CCNGG	2 cut(s)	273, 793
StyI	CCWWGG	1 cut(s)	51
TaaI	ACNGT	3 cut(s)	144, 556, 682
TasI	AATT	5 cut(s)	93, 367, 438, 466, 898
TatI	WGTACW	1 cut(s)	879
TauI	GCSGC	2 cut(s)	32, 50
TfiI	GAWTC	3 cut(s)	73, 343, 540
Tru1I	TTAA	2 cut(s)	92, 207
Tru9I	TTAA	2 cut(s)	92, 207
TscAI	CASTG	3 cut(s)	417, 454, 786
TseI	GCWGC	2 cut(s)	419, 422
TspDTI	ATGAA	6 cut(s)	48, 136, 316, 335, 380, 703
TspGWI	ACGGA	4 cut(s)	24, 166, 265, 503
TspRI	CASTG	3 cut(s)	417, 454, 786
Van91I	CCANNNNNTGG	1 cut(s)	607
VpaK11BI	GGWCC	1 cut(s)	639
XceI	RCATGY	2 cut(s)	513, 757
XspI	CTAG	2 cut(s)	785, 934
Zsp2I	ATGCAT	3 cut(s)	459, 515, 703

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.