AT2G41880

guanylate kinase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
2
OG0004677
Physical Location & Seq
Forward (+)
17474527 .. 17477311
2785 bp
Loading structure...
UTR
Exon/CDS
Intron
AT2G41880.6

Sequence Viewer

Length: 1164 bp
ATGGGAGAAGCTCCAGCAGTATTAGTGGATCATCCGGAGAACGGACACTCCAATGGTGTCTGTGTGAAATCTGAACCAGAGAACACTGAGATAACAGTCGATGTCGGCGATCGAATATTTTTGATCGGTGGAACTCATGAAAGGAACAATTTTTCCATTGGGGTTCAGATTTATGACAAAATCAGTAACAACTGGTTTAGTCCTATTGTGCTTGGGACAGGTCCTAAGCCCAGCAAGGGGTACTCCGCGTTTGTTCTTGAACAAGGTCGGATTTTGGTTATTAAAAAAGGTTCACCTCGCAACGACTCCATCTGGTTCCTCGAGGTCGATAGTCCTTATGTGCGGGAACAGAAGAAGTTACTAAGGAAGGAAGTTGTTGCTTGGAGTAAAGGTGTGAGAGGCAATGCTGAGAAGCCTATTGTTATAAGCGGTCCTTCTGGTGTGGGCAAAGGAACGCTTATATCAATGCTTATGAAGGAGTTTCCTTCAATGTTTGGGTTCTCTGTGAGTCACACAACTCGATCTCCGAGGTCTATGGAGATGGACGGTGTTCATTATCACTTTGCTGATAAAAAAGTTATGGAGAAAGAAATCAAAGACGGAAAGTTTCTTGAGTTTGCTTCTGTTCACGGTAATCTCTATGGAACCAGCATTGAGTCCGTTGAAGCGGTAACAGATTCAGGAAAGAGATGTATTCTCGACATTGATGTTCAGGGGGCAAGGTCTGTGAGAGCGAGTTCTCTTGATGCCATATTCATATTCGTATGTCCCCCTTCAATGAAAGAGCTTGAAGATCGGCTCCGTGCTAGAGGAACCGAGACAGAGGAGCAAATTCAAAAGCGGCTTAGAAATGCTGAGGCAGAGATCAAAGAAGGGATATCCTCGGGTATTTTCGGTCTCATTTTGTATAATGACAACCTTGAGGAATGCTACAAGAAGCTCAAGAATCTCTTGGGGCTAGATGGACTCGCTCATGTCAATGGTGTAGAAATAGAGGGGATCAATCTTCCCATTGAGTACGCAGTATCTAAAATGGAAGATAAGATCATTATTCAAGAAACAGGAAAAGAAACAAGGAATAAGATTGTAGTGGATATATCTTCGCTTAATGGAGGAGCACCGGGTAGAACAAGGGGGATTCTTGTCGACGCCATTAAGTTCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0003674 GO:0003824 GO:0004385 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0006139 GO:0006163 GO:0006164 GO:0006185 GO:0006725 GO:0006753 GO:0006793 GO:0006796 GO:0006807 GO:0006810 GO:0007275 GO:0008104 GO:0008150 GO:0008152 GO:0009058 GO:0009116 GO:0009117 GO:0009119 GO:0009123 GO:0009126 GO:0009132 GO:0009133 GO:0009135 GO:0009136 GO:0009141 GO:0009144 GO:0009150 GO:0009151 GO:0009152 GO:0009153 GO:0009161 GO:0009162 GO:0009163 GO:0009165 GO:0009167 GO:0009170 GO:0009179 GO:0009180 GO:0009182 GO:0009183 GO:0009185 GO:0009186 GO:0009188 GO:0009189 GO:0009199 GO:0009200 GO:0009205 GO:0009215 GO:0009225 GO:0009259 GO:0009260 GO:0009262 GO:0009263 GO:0009265 GO:0009394 GO:0009987 GO:0015031 GO:0015833 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016776 GO:0017144 GO:0018130 GO:0019205 GO:0019438 GO:0019637 GO:0019673 GO:0019692 GO:0019693 GO:0032501 GO:0032502 GO:0033036 GO:0034404 GO:0034436 GO:0034641 GO:0034654 GO:0040008 GO:0042278 GO:0042451 GO:0042455 GO:0042886 GO:0044237 GO:0044238 GO:0044249 GO:0044271 GO:0044281 GO:0044283 GO:0044424 GO:0044444 GO:0044464 GO:0045184 GO:0046034 GO:0046037 GO:0046054 GO:0046060 GO:0046066 GO:0046128 GO:0046129 GO:0046385 GO:0046390 GO:0046483 GO:0046710 GO:0046711 GO:0046939 GO:0046940 GO:0048229 GO:0048638 GO:0048856 GO:0050145 GO:0050789 GO:0050793 GO:0051179 GO:0051234 GO:0055086 GO:0065007 GO:0071702 GO:0071704 GO:0071705 GO:0072521 GO:0072522 GO:0090407 GO:1901068 GO:1901070 GO:1901135 GO:1901137 GO:1901264 GO:1901293 GO:1901360 GO:1901362 GO:1901564 GO:1901566 GO:1901576 GO:1901657 GO:1901659
KEGG Pathways
Metabolic & Signaling
ko00230 ko01100 map00230 map01100
Pfam Domains
Protein Families
Guanylate_kin

Protein Analysis

387

Amino Acids

42.67

Weight (kDa)

6.3

Isoelectric Point (pI)

34.91

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Beta-prop_FBX42 PF13415 32 - 109 2.1e-06 FBX42, beta-propeller domain
Guanylate_kin PF00625 137 - 318 9.1e-60 Guanylate kinase
AAA_18 PF13238 140 - 290 7e-06 AAA domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 425
AbsI CCTCGAGG 1 cut(s) 320
AccI GTMKAC 1 cut(s) 1146
AccII CGCG 1 cut(s) 248
AccIII TCCGGA 1 cut(s) 34
AciI CCGC 5 cut(s) 246, 343, 429, 668, 841
AclWI GGATC 2 cut(s) 36, 1007
AcsI RAATTY 1 cut(s) 831
AcyI GRCGYC 1 cut(s) 1149
AfaI GTAC 2 cut(s) 242, 1019
AfiI CCNNNNNNNGG 3 cut(s) 41, 236, 237
AgsI TTSAA 7 cut(s) 260, 489, 665, 777, 791, 836, 1055
AloI GAACNNNNNNTCC 4 cut(s) 32, 64, 137, 169
AluBI AGCT 3 cut(s) 11, 787, 940
AluI AGCT 3 cut(s) 11, 787, 940
Alw21I GWGCWC 1 cut(s) 1120
Alw26I GTCTC 2 cut(s) 812, 902
AlwI GGATC 2 cut(s) 36, 1007
Ama87I CYCGRG 2 cut(s) 320, 883
Aor13HI TCCGGA 1 cut(s) 34
ApoI RAATTY 1 cut(s) 831
AspS9I GGNCC 2 cut(s) 221, 431
AsuC2I CCSGG 1 cut(s) 1122
AsuHPI GGTGA 1 cut(s) 285
AvaI CYCGRG 2 cut(s) 320, 883
AvaII GGWCC 2 cut(s) 221, 431
Bbv12I GWGCWC 1 cut(s) 1120
BbvCI CCTCAGC 1 cut(s) 855
BccI CCATC 3 cut(s) 317, 535, 956
BcnI CCSGG 1 cut(s) 1122
BcoDI GTCTC 2 cut(s) 812, 902
BfaI CTAG 3 cut(s) 807, 959, 1162
BisI GCNGC 1 cut(s) 842
BlsI GCNGC 1 cut(s) 843
Bme1390I CCNGG 1 cut(s) 1122
Bme18I GGWCC 2 cut(s) 221, 431
BmeT110I CYCGRG 2 cut(s) 320, 883
BmgT120I GGNCC 2 cut(s) 221, 431
BmiI GGNNCC 4 cut(s) 317, 646, 800, 814
BmrFI CCNGG 1 cut(s) 1122
BmsI GCATC 1 cut(s) 736
Bpu10I CCTNAGC 2 cut(s) 225, 855
BpuEI CTTGAG 3 cut(s) 632, 926, 941
BpuMI CCSGG 1 cut(s) 1122
BsaHI GRCGYC 1 cut(s) 1149
BsaI GGTCTC 1 cut(s) 902
BsaJI CCNNGG 2 cut(s) 527, 882
BsaWI WCCGGW 1 cut(s) 34
BsaXI ACNNNNNCTCC 6 cut(s) 32, 62, 376, 406, 508, 538
Bsc4I CCNNNNNNNGG 3 cut(s) 41, 236, 237
Bse1I ACTGG 1 cut(s) 197
Bse3DI GCAATG 1 cut(s) 409
BseAI TCCGGA 1 cut(s) 34
BseDI CCNNGG 2 cut(s) 527, 882
BseGI GGATG 1 cut(s) 31
BseLI CCNNNNNNNGG 3 cut(s) 41, 236, 237
BseMI GCAATG 1 cut(s) 409
BseMII CTCAG 3 cut(s) 78, 399, 846
BseNI ACTGG 1 cut(s) 197
BseRI GAGGAG 2 cut(s) 839, 1128
BseYI CCCAGC 1 cut(s) 230
Bsh1236I CGCG 1 cut(s) 248
Bsh1285I CGRYCG 1 cut(s) 112
BsiEI CGRYCG 1 cut(s) 112
BsiHKAI GWGCWC 1 cut(s) 1120
BsiHKCI CYCGRG 2 cut(s) 320, 883
BsiSI CCGG 2 cut(s) 35, 1121
BslFI GGGAC 2 cut(s) 229, 753
BslI CCNNNNNNNGG 3 cut(s) 41, 236, 237
BsmAI GTCTC 2 cut(s) 812, 902
BsmFI GGGAC 2 cut(s) 229, 753
BsmI GAATGC 1 cut(s) 932
Bso31I GGTCTC 1 cut(s) 902
BsoBI CYCGRG 2 cut(s) 320, 883
Bsp1286I GDGCHC 1 cut(s) 1120
Bsp13I TCCGGA 1 cut(s) 34
Bsp143I GATC 8 cut(s) 28, 109, 123, 521, 793, 864, 999, 1044
BspACI CCGC 5 cut(s) 246, 343, 429, 668, 841
BspCNI CTCAG 3 cut(s) 79, 400, 847
BspEI TCCGGA 1 cut(s) 34
BspFNI CGCG 1 cut(s) 248
BspHI TCATGA 1 cut(s) 136
BspLI GGNNCC 4 cut(s) 317, 646, 800, 814
BspPI GGATC 2 cut(s) 36, 1007
BspTNI GGTCTC 1 cut(s) 902
BsrDI GCAATG 1 cut(s) 409
BsrI ACTGG 1 cut(s) 197
BssECI CCNNGG 2 cut(s) 527, 882
BssMI GATC 8 cut(s) 28, 109, 123, 521, 793, 864, 999, 1044
BssNI GRCGYC 1 cut(s) 1149
Bst4CI ACNGT 3 cut(s) 97, 548, 632
BstACI GRCGYC 1 cut(s) 1149
BstDEI CTNAG 6 cut(s) 87, 225, 362, 408, 845, 855
BstF5I GGATG 1 cut(s) 31
BstFNI CGCG 1 cut(s) 248
BstKTI GATC 8 cut(s) 31, 112, 126, 524, 796, 867, 1002, 1047
BstMAI GTCTC 2 cut(s) 812, 902
BstMBI GATC 8 cut(s) 28, 109, 123, 521, 793, 864, 999, 1044
BstMCI CGRYCG 1 cut(s) 112
BstSCI CCNGG 1 cut(s) 1120
BstUI CGCG 1 cut(s) 248
BtsCI GGATG 1 cut(s) 31
BtsIMutI CAGTG 1 cut(s) 84
CciI TCATGA 1 cut(s) 136
Cfr13I GGNCC 2 cut(s) 221, 431
CseI GACGC 1 cut(s) 1157
Csp6I GTAC 2 cut(s) 241, 1018
CviAII CATG 2 cut(s) 137, 974
CviJI RGCY 8 cut(s) 11, 229, 415, 787, 799, 844, 940, 958
CviKI_1 RGCY 8 cut(s) 11, 229, 415, 787, 799, 844, 940, 958
CviQI GTAC 2 cut(s) 241, 1018
DdeI CTNAG 6 cut(s) 87, 225, 362, 408, 845, 855
DpnI GATC 8 cut(s) 30, 111, 125, 523, 795, 866, 1001, 1046
DpnII GATC 8 cut(s) 28, 109, 123, 521, 793, 864, 999, 1044
Eco31I GGTCTC 1 cut(s) 902
Eco32I GATATC 1 cut(s) 879
Eco47I GGWCC 2 cut(s) 221, 431
Eco88I CYCGRG 2 cut(s) 320, 883
EcoO109I RGGNCCY 1 cut(s) 221
EcoRV GATATC 1 cut(s) 879
FaeI CATG 2 cut(s) 140, 977
FalI AAGNNNNNCTT 6 cut(s) 418, 450, 441, 473, 935, 967
FaqI GGGAC 2 cut(s) 229, 753
FatI CATG 2 cut(s) 136, 973
FauI CCCGC 1 cut(s) 336
FblI GTMKAC 1 cut(s) 1146
Fnu4HI GCNGC 1 cut(s) 842
FokI GGATG 1 cut(s) 18
Fsp4HI GCNGC 1 cut(s) 842
FspBI CTAG 3 cut(s) 807, 959, 1162
GluI GCNGC 1 cut(s) 842
GsaI CCCAGC 1 cut(s) 234
HapII CCGG 2 cut(s) 35, 1121
HgaI GACGC 1 cut(s) 1157
Hin1I GRCGYC 1 cut(s) 1149
Hin1II CATG 2 cut(s) 140, 977
HincII GTYRAC 1 cut(s) 1147
HindII GTYRAC 1 cut(s) 1147
HinfI GANTC 7 cut(s) 305, 508, 656, 677, 946, 966, 1138
HpaII CCGG 2 cut(s) 35, 1121
HphI GGTGA 1 cut(s) 285
Hpy166II GTNNAC 3 cut(s) 293, 628, 1147
Hpy188I TCNGA 4 cut(s) 73, 168, 270, 528
Hpy188III TCNNGA 9 cut(s) 35, 137, 257, 611, 681, 698, 743, 943, 1055
Hpy8I GTNNAC 3 cut(s) 293, 628, 1147
Hpy99I CGWCG 1 cut(s) 1151
HpyAV CCTTC 6 cut(s) 361, 444, 469, 495, 783, 866
HpyCH4III ACNGT 3 cut(s) 97, 548, 632
HpyF3I CTNAG 6 cut(s) 87, 225, 362, 408, 845, 855
Hsp92I GRCGYC 1 cut(s) 1149
Hsp92II CATG 2 cut(s) 140, 977
Kpn2I TCCGGA 1 cut(s) 34
Kzo9I GATC 8 cut(s) 28, 109, 123, 521, 793, 864, 999, 1044
LmnI GCTCC 4 cut(s) 16, 804, 826, 1115
LweI GCATC 1 cut(s) 736
MaeI CTAG 3 cut(s) 807, 959, 1162
MaeIII GTNAC 4 cut(s) 185, 357, 509, 670
MalI GATC 8 cut(s) 30, 111, 125, 523, 795, 866, 1001, 1046
MboI GATC 8 cut(s) 28, 109, 123, 521, 793, 864, 999, 1044
MboII GAAGA 5 cut(s) 364, 803, 998, 1049, 1092
MhlI GDGCHC 1 cut(s) 1120
MluCI AATT 2 cut(s) 148, 831
MlyI GAGTC 4 cut(s) 299, 517, 665, 960
MmeI TCCRAC 1 cut(s) 248
MroI TCCGGA 1 cut(s) 34
MseI TTAA 3 cut(s) 282, 1107, 1155
MslI CAYNNNNRTG 2 cut(s) 51, 978
MspI CCGG 2 cut(s) 35, 1121
MspR9I CCNGG 1 cut(s) 1122
Mva1269I GAATGC 1 cut(s) 932
MvnI CGCG 1 cut(s) 248
NciI CCSGG 1 cut(s) 1122
NdeII GATC 8 cut(s) 28, 109, 123, 521, 793, 864, 999, 1044
NlaIII CATG 2 cut(s) 140, 977
NlaIV GGNNCC 4 cut(s) 317, 646, 800, 814
NmuCI GTSAC 1 cut(s) 509
PaeR7I CTCGAG 1 cut(s) 320
PagI TCATGA 1 cut(s) 136
PcsI WCGNNNNNNNCGW 1 cut(s) 105
PctI GAATGC 1 cut(s) 932
PfeI GAWTC 3 cut(s) 677, 946, 1138
PkrI GCNGC 1 cut(s) 843
Ple19I CGATCG 1 cut(s) 112
PleI GAGTC 4 cut(s) 299, 516, 664, 960
PpsI GAGTC 4 cut(s) 299, 516, 664, 960
PpuMI RGGWCCY 1 cut(s) 221
PsiI TTATAA 1 cut(s) 425
Psp5II RGGWCCY 1 cut(s) 221
PspFI CCCAGC 1 cut(s) 230
PspN4I GGNNCC 4 cut(s) 317, 646, 800, 814
PspPI GGNCC 2 cut(s) 221, 431
PspPPI RGGWCCY 1 cut(s) 221
PspXI VCTCGAGB 1 cut(s) 320
PvuI CGATCG 1 cut(s) 112
RsaI GTAC 2 cut(s) 242, 1019
RsaNI GTAC 2 cut(s) 241, 1018
RseI CAYNNNNRTG 2 cut(s) 51, 978
SalI GTCGAC 1 cut(s) 1145
SaqAI TTAA 3 cut(s) 282, 1107, 1155
SatI GCNGC 1 cut(s) 842
Sau3AI GATC 8 cut(s) 28, 109, 123, 521, 793, 864, 999, 1044
Sau96I GGNCC 2 cut(s) 221, 431
SchI GAGTC 4 cut(s) 299, 517, 665, 960
ScrFI CCNGG 1 cut(s) 1122
SduI GDGCHC 1 cut(s) 1120
SfaNI GCATC 1 cut(s) 736
Sfr274I CTCGAG 1 cut(s) 320
SinI GGWCC 2 cut(s) 221, 431
SlaI CTCGAG 1 cut(s) 320
SmiMI CAYNNNNRTG 2 cut(s) 51, 978
SmlI CTYRAG 4 cut(s) 320, 611, 920, 941
SmoI CTYRAG 4 cut(s) 320, 611, 920, 941
Sse9I AATT 2 cut(s) 148, 831
SsiI CCGC 5 cut(s) 246, 343, 429, 668, 841
SspI AATATT 1 cut(s) 117
SspMI CTAG 3 cut(s) 807, 959, 1162
StyD4I CCNGG 1 cut(s) 1120
TaaI ACNGT 3 cut(s) 97, 548, 632
TaqI TCGA 7 cut(s) 99, 112, 321, 327, 520, 699, 1146
TaqII GACCGA 1 cut(s) 884
TasI AATT 2 cut(s) 148, 831
TauI GCSGC 1 cut(s) 844
TfiI GAWTC 3 cut(s) 677, 946, 1138
Tru1I TTAA 3 cut(s) 282, 1107, 1155
Tru9I TTAA 3 cut(s) 282, 1107, 1155
TscAI CASTG 1 cut(s) 91
TseFI GTSAC 1 cut(s) 509
Tsp45I GTSAC 1 cut(s) 509
TspDTI ATGAA 5 cut(s) 153, 488, 542, 745, 794
TspGWI ACGGA 4 cut(s) 57, 615, 649, 791
TspRI CASTG 1 cut(s) 91
VpaK11BI GGWCC 2 cut(s) 221, 431
XapI RAATTY 1 cut(s) 831
XhoI CTCGAG 1 cut(s) 320
XmiI GTMKAC 1 cut(s) 1146
XspI CTAG 3 cut(s) 807, 959, 1162
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.