Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb6

Orthogroup ID

OG0017335

Physical Location & Seq

Genomic Coordinates Reverse (-)

17452911 .. 17453813

Gene Structure 903 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_6g23390.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 903 bp

ATGGCTTCTTCTTGCCGGATTTTCGTAGGGAATATACCTTACAACGCGACCGAGGGGCAGGTCAAGGCTCTCTGCGAGGAGGTCGGCCCTGTTGTCTCTTTTCGAATCGTTACCGACAAAGACACCGGGAAGCCCATGGGTTTCGGGTTCTGCGAGTACAGGGACGAATCCACGGCGTTTAGTGCCCTGCGCAATCTTCAGGACTGCGAACTCAATGGCCGCCGTTTGAAGGTCAATTTCGCTGCTAATGAGAAATCCAATCATCACCCCATTGGTCTGCAGGCGGCTGTTGATGCGGCTGCCACGATGGGGTTGGCTAGTGATGCTTTGACTGTGTATCTCTCCAAAATGTCGAGGAATCAGTTGGCCCAGATGGTCTCAGAGATGAAGGGAATTGCGGTAGGGAACAAGGAGATGGCTCAGGAGTTGTTGCTTGCGAAGCCACAACTGAACAGGGCTCTGCTTCAAGCACAGATCATGCTTGGAATGGTCACACCTCAAATGATGGAGAAGGCTAATATGAGGCCGCTTCCTAATGTCCAGCCCCAGCAGCAGCTACTGGTTCCGAAACCGGAGCCTCAGACTATGGTCACCCCACAACGTGTGAGGCCGCTTCCTAATGTCCATCCCCAGCAGCAGCTGCTGGTTCCGAAACCGGAGCCAGTGCAGGTTTTGGAGCCACAGAATATGGTCGCCCCACAAATGATGCAAAAGGGGCCAATGCCGAAATCAGAACAGGTGCAAATCTCTGAGCCTCAGACTCTTCCAGCGGGAGTGGACGCTGCTATGTTGCAACAAGTTGTGAGCCTACCTCCTGAAACGGTGGCTTCATTGGCACCGGAACTGCGGCAACAAGTGATTCAGATCCAACAGATGTATAGGCAAGGTCAGATGATGCTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003729 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005847 GO:0005849 GO:0006139 GO:0006379 GO:0006396 GO:0006397 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009987 GO:0010467 GO:0016070 GO:0016071 GO:0016604 GO:0031123 GO:0031124 GO:0031974 GO:0031981 GO:0032991 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0044237 GO:0044238 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044451 GO:0044464 GO:0046483 GO:0070013 GO:0071704 GO:0071920 GO:0090304 GO:0090305 GO:0090501 GO:0097159 GO:0098787 GO:0098789 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

ko03015 map03015

Pfam Domains

Protein Families

CSTF2_hinge CSTF_C RRM_1

Protein Analysis

301

Amino Acids

33.08

Weight (kDa)

8.32

Isoelectric Point (pI)

47.99

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
RRM_1	PF00076	7 - 77	2.9e-19	RNA recognition motif
CSTF2_hinge	PF14327	106 - 171	1.1e-13	Hinge domain of cleavage stimulation factor subunit 2
CSTF_C	PF14304	261 - 296	5.4e-07	Transcription termination and cleavage factor C-terminal

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0017335)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_6g22940 FvH4_6g23390
rosa_chinensis	RchiOBHm_Chr3g0481441
rosa_laevigata	RLG00000023400
rosa_multiflora	Rmu_sc0000064.1_g000026 Rmu_sc0021886.1_g000005
rosa_roxburghii	Rroxscaffold_6G00400450
rosa_rugosa	Rorug03G0191800
rosa_samantha	Rh3AG242700 Rh3BG277700 Rh3CG272700 Rh3DG269700
rosa_wichuraiana	Rw3G021690

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	191
Acc36I	ACCTGC	2 cut(s)	49, 658
AccB1I	GGYRCC	1 cut(s)	835
AccII	CGCG	1 cut(s)	47
AciI	CCGC	8 cut(s)	220, 284, 296, 398, 527, 611, 770, 847
AclWI	GGATC	1 cut(s)	859
AcoI	YGGCCR	1 cut(s)	217
AcuI	CTGAAG	1 cut(s)	182
AdeI	CACNNNGTG	1 cut(s)	602
AfaI	GTAC	1 cut(s)	158
AfiI	CCNNNNNNNGG	2 cut(s)	229, 309
AflIII	ACRYGT	1 cut(s)	601
AgsI	TTSAA	2 cut(s)	229, 467
AluBI	AGCT	2 cut(s)	556, 640
AluI	AGCT	2 cut(s)	556, 640
Alw26I	GTCTC	2 cut(s)	100, 382
AlwI	GGATC	1 cut(s)	859
AlwNI	CAGNNNCTG	3 cut(s)	559, 640, 643
AoxI	GGCC	6 cut(s)	85, 217, 366, 524, 608, 716
ApeKI	GCWGC	8 cut(s)	242, 299, 550, 553, 634, 637, 640, 782
AspLEI	GCGC	1 cut(s)	192
AspS9I	GGNCC	3 cut(s)	86, 367, 716
AsuC2I	CCSGG	1 cut(s)	127
AsuHPI	GGTGA	2 cut(s)	257, 583
AsuII	TTCGAA	1 cut(s)	103
BaeGI	GKGCMC	1 cut(s)	187
BanI	GGYRCC	1 cut(s)	835
BanII	GRGCYC	1 cut(s)	460
BbvI	GCAGC	8 cut(s)	229, 286, 562, 565, 627, 646, 649, 769
BccI	CCATC	5 cut(s)	301, 367, 409, 499, 633
BceAI	ACGGC	2 cut(s)	189, 207
BcnI	CCSGG	1 cut(s)	127
BcoDI	GTCTC	2 cut(s)	100, 382
BfaI	CTAG	1 cut(s)	318
BfmI	CTRYAG	1 cut(s)	278
BfuAI	ACCTGC	2 cut(s)	49, 658
Bme1390I	CCNGG	1 cut(s)	127
BmgT120I	GGNCC	3 cut(s)	86, 367, 716
BmiI	GGNNCC	7 cut(s)	564, 576, 648, 660, 678, 717, 837
BmrFI	CCNGG	1 cut(s)	127
BmsI	GCATC	4 cut(s)	283, 313, 696, 885
BoxI	GACNNNNGTC	1 cut(s)	587
BplI	GAGNNNNNCTC	2 cut(s)	796, 828
Bpu10I	CCTNAGC	1 cut(s)	420
Bpu14I	TTCGAA	1 cut(s)	103
BpuMI	CCSGG	1 cut(s)	127
BsaBI	GATNNNNATC	1 cut(s)	863
BsaI	GGTCTC	1 cut(s)	382
BsaJI	CCNNGG	3 cut(s)	51, 135, 171
BsaWI	WCCGGW	3 cut(s)	571, 655, 838
Bsc4I	CCNNNNNNNGG	2 cut(s)	229, 309
Bse1I	ACTGG	2 cut(s)	564, 662
Bse8I	GATNNNNATC	1 cut(s)	863
BseDI	CCNNGG	3 cut(s)	51, 135, 171
BseGI	GGATG	1 cut(s)	625
BseJI	GATNNNNATC	1 cut(s)	863
BseLI	CCNNNNNNNGG	2 cut(s)	229, 309
BseMII	CTCAG	5 cut(s)	393, 434, 593, 741, 770
BseNI	ACTGG	2 cut(s)	564, 662
BseRI	GAGGAG	1 cut(s)	92
BseSI	GKGCMC	1 cut(s)	187
BseXI	GCAGC	8 cut(s)	229, 286, 562, 565, 627, 646, 649, 769
BseYI	CCCAGC	2 cut(s)	546, 630
BsgI	GTGCAG	1 cut(s)	686
Bsh1236I	CGCG	1 cut(s)	47
Bsh1285I	CGRYCG	1 cut(s)	51
BshFI	GGCC	6 cut(s)	87, 219, 368, 526, 610, 718
BshNI	GGYRCC	1 cut(s)	835
BsiEI	CGRYCG	1 cut(s)	51
BsiSI	CCGG	5 cut(s)	16, 126, 572, 656, 839
BslFI	GGGAC	1 cut(s)	176
BslI	CCNNNNNNNGG	2 cut(s)	229, 309
BsmAI	GTCTC	2 cut(s)	100, 382
BsmFI	GGGAC	1 cut(s)	176
BsnI	GGCC	6 cut(s)	87, 219, 368, 526, 610, 718
Bso31I	GGTCTC	1 cut(s)	382
Bsp119I	TTCGAA	1 cut(s)	103
Bsp1286I	GDGCHC	2 cut(s)	187, 460
Bsp143I	GATC	2 cut(s)	474, 864
Bsp19I	CCATGG	1 cut(s)	135
BspACI	CCGC	8 cut(s)	220, 284, 296, 398, 527, 611, 770, 847
BspANI	GGCC	6 cut(s)	87, 219, 368, 526, 610, 718
BspCNI	CTCAG	5 cut(s)	392, 433, 592, 742, 769
BspFNI	CGCG	1 cut(s)	47
BspLI	GGNNCC	7 cut(s)	564, 576, 648, 660, 678, 717, 837
BspMAI	CTGCAG	1 cut(s)	282
BspMI	ACCTGC	2 cut(s)	49, 658
BspPI	GGATC	1 cut(s)	859
BspT104I	TTCGAA	1 cut(s)	103
BspT107I	GGYRCC	1 cut(s)	835
BspTNI	GGTCTC	1 cut(s)	382
BsrI	ACTGG	2 cut(s)	564, 662
BssECI	CCNNGG	3 cut(s)	51, 135, 171
BssMI	GATC	2 cut(s)	474, 864
BssT1I	CCWWGG	1 cut(s)	135
Bst4CI	ACNGT	2 cut(s)	334, 823
Bst6I	CTCTTC	1 cut(s)	768
BstAPI	GCANNNNNTGC	1 cut(s)	640
BstBI	TTCGAA	1 cut(s)	103
BstC8I	GCNNGC	2 cut(s)	282, 435
BstDEI	CTNAG	5 cut(s)	379, 420, 579, 750, 756
BstDSI	CCRYGG	2 cut(s)	135, 171
BstEII	GGTNACC	1 cut(s)	589
BstF5I	GGATG	1 cut(s)	625
BstFNI	CGCG	1 cut(s)	47
BstHHI	GCGC	1 cut(s)	192
BstKTI	GATC	2 cut(s)	477, 867
BstMAI	GTCTC	2 cut(s)	100, 382
BstMBI	GATC	2 cut(s)	474, 864
BstMCI	CGRYCG	1 cut(s)	51
BstMWI	GCNNNNNNNGC	8 cut(s)	182, 293, 323, 439, 550, 640, 715, 833
BstPAI	GACNNNNGTC	1 cut(s)	587
BstPI	GGTNACC	1 cut(s)	589
BstSCI	CCNGG	1 cut(s)	125
BstSFI	CTRYAG	1 cut(s)	278
BstSLI	GKGCMC	1 cut(s)	187
BstUI	CGCG	1 cut(s)	47
BstV1I	GCAGC	8 cut(s)	229, 286, 562, 565, 627, 646, 649, 769
BstX2I	RGATCY	1 cut(s)	864
BstYI	RGATCY	1 cut(s)	864
BsuRI	GGCC	6 cut(s)	87, 219, 368, 526, 610, 718
BtgI	CCRYGG	2 cut(s)	135, 171
BtsCI	GGATG	1 cut(s)	625
BtsIMutI	CAGTG	1 cut(s)	669
BveI	ACCTGC	2 cut(s)	49, 658
Cac8I	GCNNGC	2 cut(s)	282, 435
CaiI	CAGNNNCTG	3 cut(s)	559, 640, 643
CfoI	GCGC	1 cut(s)	192
Cfr13I	GGNCC	3 cut(s)	86, 367, 716
CseI	GACGC	1 cut(s)	788
Csp6I	GTAC	1 cut(s)	157
CviAII	CATG	2 cut(s)	136, 478
CviQI	GTAC	1 cut(s)	157
DdeI	CTNAG	5 cut(s)	379, 420, 579, 750, 756
DpnI	GATC	2 cut(s)	476, 866
DpnII	GATC	2 cut(s)	474, 864
DraIII	CACNNNGTG	1 cut(s)	602
EaeI	YGGCCR	1 cut(s)	217
Eam1104I	CTCTTC	1 cut(s)	768
EarI	CTCTTC	1 cut(s)	768
Eco130I	CCWWGG	1 cut(s)	135
Eco24I	GRGCYC	1 cut(s)	460
Eco31I	GGTCTC	1 cut(s)	382
Eco57I	CTGAAG	1 cut(s)	182
Eco91I	GGTNACC	1 cut(s)	589
EcoO65I	GGTNACC	1 cut(s)	589
EcoT14I	CCWWGG	1 cut(s)	135
EcoT38I	GRGCYC	1 cut(s)	460
ErhI	CCWWGG	1 cut(s)	135
FaeI	CATG	2 cut(s)	139, 481
FaiI	YATR	8 cut(s)	35, 137, 479, 521, 587, 689, 788, 879
FaqI	GGGAC	1 cut(s)	176
FatI	CATG	2 cut(s)	135, 477
FauI	CCCGC	1 cut(s)	763
FokI	GGATG	1 cut(s)	612
FriOI	GRGCYC	1 cut(s)	460
FspBI	CTAG	1 cut(s)	318
FspI	TGCGCA	1 cut(s)	191
GlaI	GCGC	1 cut(s)	191
GsaI	CCCAGC	2 cut(s)	550, 634
HaeIII	GGCC	6 cut(s)	87, 219, 368, 526, 610, 718
HapII	CCGG	5 cut(s)	16, 126, 572, 656, 839
HgaI	GACGC	1 cut(s)	788
HhaI	GCGC	1 cut(s)	192
Hin1II	CATG	2 cut(s)	139, 481
Hin6I	GCGC	1 cut(s)	190
HinP1I	GCGC	1 cut(s)	190
HinfI	GANTC	5 cut(s)	105, 167, 358, 760, 859
HpaII	CCGG	5 cut(s)	16, 126, 572, 656, 839
HphI	GGTGA	2 cut(s)	257, 583
Hpy166II	GTNNAC	1 cut(s)	778
Hpy188I	TCNGA	9 cut(s)	382, 567, 582, 651, 733, 751, 759, 864, 891
Hpy188III	TCNNGA	3 cut(s)	200, 422, 815
Hpy8I	GTNNAC	1 cut(s)	778
HpyAV	CCTTC	3 cut(s)	223, 382, 505
HpyCH4III	ACNGT	2 cut(s)	334, 823
HpyCH4IV	ACGT	1 cut(s)	601
HpyCH4V	TGCA	5 cut(s)	280, 667, 709, 742, 793
HpyF10VI	GCNNNNNNNGC	8 cut(s)	182, 293, 323, 439, 550, 640, 715, 833
HpyF3I	CTNAG	5 cut(s)	379, 420, 579, 750, 756
HpySE526I	ACGT	1 cut(s)	601
Hsp92II	CATG	2 cut(s)	139, 481
HspAI	GCGC	1 cut(s)	190
Kzo9I	GATC	2 cut(s)	474, 864
LmnI	GCTCC	3 cut(s)	574, 658, 676
Lsp1109I	GCAGC	8 cut(s)	229, 286, 562, 565, 627, 646, 649, 769
LweI	GCATC	4 cut(s)	283, 313, 696, 885
MaeI	CTAG	1 cut(s)	318
MaeII	ACGT	1 cut(s)	601
MaeIII	GTNAC	3 cut(s)	109, 490, 589
MalI	GATC	2 cut(s)	476, 866
MboI	GATC	2 cut(s)	474, 864
MboII	GAAGA	2 cut(s)	188, 755
MflI	RGATCY	1 cut(s)	864
MhlI	GDGCHC	2 cut(s)	187, 460
MluCI	AATT	2 cut(s)	235, 393
MlyI	GAGTC	1 cut(s)	754
MmeI	TCCRAC	1 cut(s)	892
MspA1I	CMGCKG	2 cut(s)	640, 770
MspI	CCGG	5 cut(s)	16, 126, 572, 656, 839
MspR9I	CCNGG	1 cut(s)	127
MvnI	CGCG	1 cut(s)	47
MwoI	GCNNNNNNNGC	8 cut(s)	182, 293, 323, 439, 550, 640, 715, 833
NciI	CCSGG	1 cut(s)	127
NcoI	CCATGG	1 cut(s)	135
NdeII	GATC	2 cut(s)	474, 864
NlaIII	CATG	2 cut(s)	139, 481
NlaIV	GGNNCC	7 cut(s)	564, 576, 648, 660, 678, 717, 837
NmuCI	GTSAC	2 cut(s)	490, 589
NsbI	TGCGCA	1 cut(s)	191
NspV	TTCGAA	1 cut(s)	103
PcsI	WCGNNNNNNNCGW	1 cut(s)	150
PfeI	GAWTC	4 cut(s)	105, 167, 358, 859
PleI	GAGTC	1 cut(s)	754
PpsI	GAGTC	1 cut(s)	754
PshAI	GACNNNNGTC	1 cut(s)	587
PspEI	GGTNACC	1 cut(s)	589
PspFI	CCCAGC	2 cut(s)	546, 630
PspN4I	GGNNCC	7 cut(s)	564, 576, 648, 660, 678, 717, 837
PspPI	GGNCC	3 cut(s)	86, 367, 716
PstI	CTGCAG	1 cut(s)	282
PstNI	CAGNNNCTG	3 cut(s)	559, 640, 643
PsuI	RGATCY	1 cut(s)	864
PvuII	CAGCTG	1 cut(s)	640
RsaI	GTAC	1 cut(s)	158
RsaNI	GTAC	1 cut(s)	157
Sau3AI	GATC	2 cut(s)	474, 864
Sau96I	GGNCC	3 cut(s)	86, 367, 716
SchI	GAGTC	1 cut(s)	754
ScrFI	CCNGG	1 cut(s)	127
SduI	GDGCHC	2 cut(s)	187, 460
SfaNI	GCATC	4 cut(s)	283, 313, 696, 885
SfcI	CTRYAG	1 cut(s)	278
SfuI	TTCGAA	1 cut(s)	103
Sse9I	AATT	2 cut(s)	235, 393
SsiI	CCGC	8 cut(s)	220, 284, 296, 398, 527, 611, 770, 847
SspMI	CTAG	1 cut(s)	318
StyD4I	CCNGG	1 cut(s)	125
StyI	CCWWGG	1 cut(s)	135
TaaI	ACNGT	2 cut(s)	334, 823
TaiI	ACGT	1 cut(s)	604
TaqI	TCGA	2 cut(s)	103, 353
TaqII	GACCGA	1 cut(s)	65
TasI	AATT	2 cut(s)	235, 393
TatI	WGTACW	1 cut(s)	156
TauI	GCSGC	6 cut(s)	222, 287, 299, 529, 613, 850
TfiI	GAWTC	4 cut(s)	105, 167, 358, 859
TscAI	CASTG	1 cut(s)	669
TseFI	GTSAC	2 cut(s)	490, 589
TseI	GCWGC	8 cut(s)	242, 299, 550, 553, 634, 637, 640, 782
Tsp45I	GTSAC	2 cut(s)	490, 589
TspDTI	ATGAA	2 cut(s)	401, 819
TspRI	CASTG	1 cut(s)	669
XcmI	CCANNNNNNNNNTGG	1 cut(s)	310
XspI	CTAG	1 cut(s)	318

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.