DNA-directed RNA
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| Species | Orthologous Gene IDs |
|---|---|
| arabidopsis_thaliana | AT3G57080 |
| fragaria_vesca | FvH4_6g25210 |
| malus_domestica | MD00G1170800.v1.1 MD14G1084600.v1.1 |
| prunus_persica | Prupe.7G043600_v2.0.a1 Prupe.7G043600_v2.0.a1 Prupe.7G043600_v2.0.a1 |
| pyrus_communis | pycom12g07770 pycom14g07430 |
| rosa_chinensis | RchiOBHm_Chr2g0125071 |
| rosa_laevigata | RLG00000018847 |
| rosa_multiflora | Rmu_sc0003505.1_g000022 |
| rosa_roxburghii | Rroxscaffold_2G00118260 Rroxscaffold_2G00118720 |
| rosa_rugosa | Rorug02G0255400 Rorug02G0255500.1 |
| rosa_samantha | Rh2AG313900 Rh2BG322200 Rh2CG304500 Rh2DG340600 |
| rosa_wichuraiana | Rw2G025400 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccII | CGCG | 1 cut(s) | 312 |
| AciI | CCGC | 2 cut(s) | 310, 312 |
| AclWI | GGATC | 2 cut(s) | 180, 414 |
| AcoI | YGGCCR | 1 cut(s) | 196 |
| AcsI | RAATTY | 1 cut(s) | 561 |
| AcuI | CTGAAG | 1 cut(s) | 545 |
| AcyI | GRCGYC | 1 cut(s) | 210 |
| AfaI | GTAC | 1 cut(s) | 590 |
| AflIII | ACRYGT | 1 cut(s) | 652 |
| AgsI | TTSAA | 5 cut(s) | 176, 371, 478, 542, 602 |
| AjnI | CCWGG | 1 cut(s) | 283 |
| AluBI | AGCT | 3 cut(s) | 392, 518, 553 |
| AluI | AGCT | 3 cut(s) | 392, 518, 553 |
| AlwI | GGATC | 2 cut(s) | 180, 414 |
| AoxI | GGCC | 4 cut(s) | 41, 196, 281, 373 |
| ApeKI | GCWGC | 2 cut(s) | 316, 550 |
| ApoI | RAATTY | 1 cut(s) | 561 |
| ArsI | GACNNNNNNTTYG | 2 cut(s) | 370, 402 |
| AseI | ATTAAT | 1 cut(s) | 362 |
| AspS9I | GGNCC | 2 cut(s) | 41, 281 |
| AsuC2I | CCSGG | 1 cut(s) | 352 |
| AsuHPI | GGTGA | 3 cut(s) | 77, 628, 647 |
| BanII | GRGCYC | 1 cut(s) | 357 |
| BbvI | GCAGC | 2 cut(s) | 303, 562 |
| BccI | CCATC | 1 cut(s) | 62 |
| BceAI | ACGGC | 1 cut(s) | 211 |
| BcgI | CGANNNNNNTGC | 2 cut(s) | 539, 573 |
| BciT130I | CCWGG | 1 cut(s) | 285 |
| BcnI | CCSGG | 1 cut(s) | 352 |
| BisI | GCNGC | 2 cut(s) | 317, 551 |
| BlsI | GCNGC | 2 cut(s) | 318, 552 |
| BmcAI | AGTACT | 1 cut(s) | 590 |
| Bme1390I | CCNGG | 2 cut(s) | 285, 352 |
| BmgT120I | GGNCC | 2 cut(s) | 41, 281 |
| BmrFI | CCNGG | 2 cut(s) | 285, 352 |
| BmsI | GCATC | 4 cut(s) | 111, 252, 496, 565 |
| BpmI | CTGGAG | 1 cut(s) | 137 |
| Bpu10I | CCTNAGC | 1 cut(s) | 125 |
| BpuEI | CTTGAG | 1 cut(s) | 70 |
| BpuMI | CCSGG | 1 cut(s) | 352 |
| BsaBI | GATNNNNATC | 1 cut(s) | 411 |
| BsaHI | GRCGYC | 1 cut(s) | 210 |
| BsaJI | CCNNGG | 1 cut(s) | 310 |
| BsaWI | WCCGGW | 1 cut(s) | 632 |
| BsaXI | ACNNNNNCTCC | 4 cut(s) | 15, 45, 504, 534 |
| Bse8I | GATNNNNATC | 1 cut(s) | 411 |
| BseBI | CCWGG | 1 cut(s) | 285 |
| BseDI | CCNNGG | 1 cut(s) | 310 |
| BseGI | GGATG | 3 cut(s) | 267, 306, 580 |
| BseJI | GATNNNNATC | 1 cut(s) | 411 |
| BseRI | GAGGAG | 1 cut(s) | 142 |
| BseXI | GCAGC | 2 cut(s) | 303, 562 |
| Bsh1236I | CGCG | 1 cut(s) | 312 |
| Bsh1285I | CGRYCG | 1 cut(s) | 217 |
| BshFI | GGCC | 4 cut(s) | 43, 198, 283, 375 |
| BsiEI | CGRYCG | 1 cut(s) | 217 |
| BsiSI | CCGG | 2 cut(s) | 351, 633 |
| BslFI | GGGAC | 1 cut(s) | 143 |
| BsmFI | GGGAC | 1 cut(s) | 143 |
| BsnI | GGCC | 4 cut(s) | 43, 198, 283, 375 |
| Bsp1286I | GDGCHC | 1 cut(s) | 357 |
| Bsp143I | GATC | 3 cut(s) | 185, 214, 406 |
| BspACI | CCGC | 2 cut(s) | 310, 312 |
| BspANI | GGCC | 4 cut(s) | 43, 198, 283, 375 |
| BspFNI | CGCG | 1 cut(s) | 312 |
| BspPI | GGATC | 2 cut(s) | 180, 414 |
| BssECI | CCNNGG | 1 cut(s) | 310 |
| BssMI | GATC | 3 cut(s) | 185, 214, 406 |
| BssNI | GRCGYC | 1 cut(s) | 210 |
| Bst2UI | CCWGG | 1 cut(s) | 285 |
| Bst4CI | ACNGT | 4 cut(s) | 112, 235, 278, 665 |
| Bst6I | CTCTTC | 1 cut(s) | 177 |
| BstACI | GRCGYC | 1 cut(s) | 210 |
| BstC8I | GCNNGC | 1 cut(s) | 314 |
| BstDEI | CTNAG | 1 cut(s) | 125 |
| BstDSI | CCRYGG | 1 cut(s) | 310 |
| BstF5I | GGATG | 3 cut(s) | 267, 306, 580 |
| BstFNI | CGCG | 1 cut(s) | 312 |
| BstKTI | GATC | 3 cut(s) | 188, 217, 409 |
| BstMBI | GATC | 3 cut(s) | 185, 214, 406 |
| BstMCI | CGRYCG | 1 cut(s) | 217 |
| BstMWI | GCNNNNNNNGC | 1 cut(s) | 515 |
| BstNI | CCWGG | 1 cut(s) | 285 |
| BstNSI | RCATGY | 2 cut(s) | 473, 656 |
| BstSCI | CCNGG | 2 cut(s) | 283, 350 |
| BstUI | CGCG | 1 cut(s) | 312 |
| BstV1I | GCAGC | 2 cut(s) | 303, 562 |
| BstX2I | RGATCY | 1 cut(s) | 406 |
| BstYI | RGATCY | 1 cut(s) | 406 |
| BsuRI | GGCC | 4 cut(s) | 43, 198, 283, 375 |
| BtgI | CCRYGG | 1 cut(s) | 310 |
| BtsCI | GGATG | 3 cut(s) | 267, 306, 580 |
| Cac8I | GCNNGC | 1 cut(s) | 314 |
| Cfr13I | GGNCC | 2 cut(s) | 41, 281 |
| Cfr42I | CCGCGG | 1 cut(s) | 313 |
| CseI | GACGC | 1 cut(s) | 218 |
| Csp6I | GTAC | 1 cut(s) | 589 |
| CviAII | CATG | 2 cut(s) | 470, 653 |
| CviQI | GTAC | 1 cut(s) | 589 |
| DdeI | CTNAG | 1 cut(s) | 125 |
| DpnI | GATC | 3 cut(s) | 187, 216, 408 |
| DpnII | GATC | 3 cut(s) | 185, 214, 406 |
| DraI | TTTAAA | 1 cut(s) | 421 |
| EaeI | YGGCCR | 1 cut(s) | 196 |
| Eam1104I | CTCTTC | 1 cut(s) | 177 |
| EarI | CTCTTC | 1 cut(s) | 177 |
| Eco24I | GRGCYC | 1 cut(s) | 357 |
| Eco32I | GATATC | 1 cut(s) | 640 |
| Eco57I | CTGAAG | 1 cut(s) | 545 |
| EcoO109I | RGGNCCY | 1 cut(s) | 41 |
| EcoRII | CCWGG | 1 cut(s) | 283 |
| EcoRV | GATATC | 1 cut(s) | 640 |
| EcoT38I | GRGCYC | 1 cut(s) | 357 |
| FaeI | CATG | 2 cut(s) | 473, 656 |
| FaiI | YATR | 7 cut(s) | 321, 359, 461, 471, 594, 654, 661 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 458, 490 |
| FaqI | GGGAC | 1 cut(s) | 143 |
| FatI | CATG | 2 cut(s) | 469, 652 |
| FauI | CCCGC | 1 cut(s) | 305 |
| Fnu4HI | GCNGC | 2 cut(s) | 317, 551 |
| FokI | GGATG | 3 cut(s) | 274, 293, 587 |
| FriOI | GRGCYC | 1 cut(s) | 357 |
| Fsp4HI | GCNGC | 2 cut(s) | 317, 551 |
| GluI | GCNGC | 2 cut(s) | 317, 551 |
| GsuI | CTGGAG | 1 cut(s) | 137 |
| HaeIII | GGCC | 4 cut(s) | 43, 198, 283, 375 |
| HapII | CCGG | 2 cut(s) | 351, 633 |
| HgaI | GACGC | 1 cut(s) | 218 |
| Hin1I | GRCGYC | 1 cut(s) | 210 |
| Hin1II | CATG | 2 cut(s) | 473, 656 |
| HinfI | GANTC | 1 cut(s) | 82 |
| HpaII | CCGG | 2 cut(s) | 351, 633 |
| HphI | GGTGA | 3 cut(s) | 77, 628, 647 |
| Hpy166II | GTNNAC | 1 cut(s) | 64 |
| Hpy188I | TCNGA | 5 cut(s) | 157, 185, 247, 256, 327 |
| Hpy188III | TCNNGA | 7 cut(s) | 116, 176, 404, 436, 475, 496, 523 |
| Hpy8I | GTNNAC | 1 cut(s) | 64 |
| Hpy99I | CGWCG | 1 cut(s) | 212 |
| HpyAV | CCTTC | 3 cut(s) | 200, 261, 289 |
| HpyCH4III | ACNGT | 4 cut(s) | 112, 235, 278, 665 |
| HpyCH4V | TGCA | 3 cut(s) | 319, 578, 584 |
| HpyF10VI | GCNNNNNNNGC | 1 cut(s) | 515 |
| HpyF3I | CTNAG | 1 cut(s) | 125 |
| Hsp92I | GRCGYC | 1 cut(s) | 210 |
| Hsp92II | CATG | 2 cut(s) | 473, 656 |
| KspI | CCGCGG | 1 cut(s) | 313 |
| Kzo9I | GATC | 3 cut(s) | 185, 214, 406 |
| Lsp1109I | GCAGC | 2 cut(s) | 303, 562 |
| LweI | GCATC | 4 cut(s) | 111, 252, 496, 565 |
| MaeIII | GTNAC | 4 cut(s) | 83, 99, 622, 655 |
| MalI | GATC | 3 cut(s) | 187, 216, 408 |
| MboI | GATC | 3 cut(s) | 185, 214, 406 |
| MboII | GAAGA | 4 cut(s) | 164, 359, 538, 554 |
| MfeI | CAATTG | 1 cut(s) | 579 |
| MflI | RGATCY | 1 cut(s) | 406 |
| MhlI | GDGCHC | 1 cut(s) | 357 |
| MluCI | AATT | 3 cut(s) | 363, 561, 579 |
| MlyI | GAGTC | 1 cut(s) | 91 |
| MnlI | CCTC | 9 cut(s) | 22, 128, 160, 163, 176, 230, 253, 567, 599 |
| MseI | TTAA | 4 cut(s) | 362, 420, 456, 534 |
| MspA1I | CMGCKG | 1 cut(s) | 312 |
| MspI | CCGG | 2 cut(s) | 351, 633 |
| MspR9I | CCNGG | 2 cut(s) | 285, 352 |
| MunI | CAATTG | 1 cut(s) | 579 |
| MvaI | CCWGG | 1 cut(s) | 285 |
| MvnI | CGCG | 1 cut(s) | 312 |
| MwoI | GCNNNNNNNGC | 1 cut(s) | 515 |
| NciI | CCSGG | 1 cut(s) | 352 |
| NdeII | GATC | 3 cut(s) | 185, 214, 406 |
| NlaIII | CATG | 2 cut(s) | 473, 656 |
| NmuCI | GTSAC | 2 cut(s) | 83, 99 |
| NspI | RCATGY | 2 cut(s) | 473, 656 |
| PciI | ACATGT | 1 cut(s) | 652 |
| PkrI | GCNGC | 2 cut(s) | 318, 552 |
| Ple19I | CGATCG | 1 cut(s) | 217 |
| PleI | GAGTC | 1 cut(s) | 90 |
| PpsI | GAGTC | 1 cut(s) | 90 |
| PscI | ACATGT | 1 cut(s) | 652 |
| PshBI | ATTAAT | 1 cut(s) | 362 |
| Psp6I | CCWGG | 1 cut(s) | 283 |
| PspGI | CCWGG | 1 cut(s) | 283 |
| PspPI | GGNCC | 2 cut(s) | 41, 281 |
| PsuI | RGATCY | 1 cut(s) | 406 |
| PvuI | CGATCG | 1 cut(s) | 217 |
| RsaI | GTAC | 1 cut(s) | 590 |
| RsaNI | GTAC | 1 cut(s) | 589 |
| SacII | CCGCGG | 1 cut(s) | 313 |
| SaqAI | TTAA | 4 cut(s) | 362, 420, 456, 534 |
| SatI | GCNGC | 2 cut(s) | 317, 551 |
| Sau3AI | GATC | 3 cut(s) | 185, 214, 406 |
| Sau96I | GGNCC | 2 cut(s) | 41, 281 |
| ScaI | AGTACT | 1 cut(s) | 590 |
| SchI | GAGTC | 1 cut(s) | 91 |
| ScrFI | CCNGG | 2 cut(s) | 285, 352 |
| SduI | GDGCHC | 1 cut(s) | 357 |
| SetI | ASST | 9 cut(s) | 33, 168, 300, 394, 495, 520, 555, 610, 629 |
| SfaNI | GCATC | 4 cut(s) | 111, 252, 496, 565 |
| Sfr303I | CCGCGG | 1 cut(s) | 313 |
| SgrBI | CCGCGG | 1 cut(s) | 313 |
| SmlI | CTYRAG | 1 cut(s) | 49 |
| SmoI | CTYRAG | 1 cut(s) | 49 |
| Sse9I | AATT | 3 cut(s) | 363, 561, 579 |
| SsiI | CCGC | 2 cut(s) | 310, 312 |
| SspI | AATATT | 1 cut(s) | 432 |
| StyD4I | CCNGG | 2 cut(s) | 283, 350 |
| TaaI | ACNGT | 4 cut(s) | 112, 235, 278, 665 |
| TaqI | TCGA | 2 cut(s) | 162, 559 |
| TasI | AATT | 3 cut(s) | 363, 561, 579 |
| TatI | WGTACW | 1 cut(s) | 588 |
| Tru1I | TTAA | 4 cut(s) | 362, 420, 456, 534 |
| Tru9I | TTAA | 4 cut(s) | 362, 420, 456, 534 |
| TseFI | GTSAC | 2 cut(s) | 83, 99 |
| TseI | GCWGC | 2 cut(s) | 316, 550 |
| Tsp45I | GTSAC | 2 cut(s) | 83, 99 |
| TspDTI | ATGAA | 1 cut(s) | 227 |
| TspGWI | ACGGA | 2 cut(s) | 133, 274 |
| VspI | ATTAAT | 1 cut(s) | 362 |
| XapI | RAATTY | 1 cut(s) | 561 |
| XceI | RCATGY | 2 cut(s) | 473, 656 |
| ZrmI | AGTACT | 1 cut(s) | 590 |