Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000002

Orthogroup ID

OG0009947

Physical Location & Seq

Genomic Coordinates Reverse (-)

26745503 .. 26749793

Gene Structure 4291 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug02G0255400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 984 bp

ATGGCCAGCTTCACCATGATTTCTCTCTCTAACCCAGCCTCCGGTGTCGCCTCCGACTTTCATCATCAACAATGTCCCAAATGGCGACTCCGAGCTTCTTCTACTTCTTCTTCCTCTGCTGCTGCTGCTCCCGGCGTCGACCTCAAAACCCTCGAATCCGCTATCGAAAAGAAAGACAGCGGTGCAGTTAAAGAGGCGCTGGATCAGCTAAGGGAAGCTGGGTGGGCTAAGAAGTGGAGTTCTCAGCCATATGTCTCTCGGCGTACGACATCTCTTCGGGAACTGACATCTCTTGGGATCAAGAATGCCGAAACTCTTGCGGTTCCGAGCGTCAGAAATGATGCGGCATTTCTATTCACCGTTGTGGGGACAACCGGATTCATAGGCCTTCTTGCTGGCCAGCTTCCAGGGGATTGGGGCTTTTTTGTGCCATATTTGGTTGGGAGCATCTCTCTAGTAGTTTTGGGTGTGGGAAGCACTGCCCCTGGGCTTCTTCAAGCTGCCATATCTAGCTTTTCATCATTTTTCCCAGATTACCAGGAGAGAATTGCTAGTCATGAAGCTGCTCATTTTTTAGTTGCGTATTTGCTGGGTCTCCCTATTCTGGGTTATTCTCTAGATATTGGGAAAGAGCATGTCAATCTCATTGATCAAAGGCTGGAAAAGCTGATATACAGTGGGCAGCTTGATGCAAAGGAACTAGACAGGTTGGCTGTGGTAGCAATGGCTGGACTCGCAGCAGAAGGTCTGAAGTATGACAAAGTGATTGGTCAATCTGCTGATCTCTTCACTCTTCAGAGATTTATCAACAGAAGCAAGCCACAGCTTAGCAAAGATCAGCAACAAAATCTTACTAGATGGGCTGTTTTGTTTGCTGGATCCCTCATAAAAAACGACAAGGCAATGCATGAAGCTCTGAAAGCAGCAATGACAAAGAAAGCAACTATATTGGAATGTATTGAAGCAATCGAGACAGCTGCTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000418 GO:0000419 GO:0000428 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005665 GO:0005666 GO:0005730 GO:0005736 GO:0016591 GO:0030880 GO:0031974 GO:0031981 GO:0032991 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044451 GO:0044452 GO:0044464 GO:0055029 GO:0061695 GO:0070013 GO:1902494 GO:1990234

KEGG Pathways

Metabolic & Signaling

ko00230 ko00240 ko01100 ko03020 ko04623 ko05016 ko05169 map00230 map00240 map01100 map03020 map04623 map05016 map05169

Pfam Domains

Protein Families

RNA_pol_Rpb5_C RNA_pol_Rpb5_N

Protein Analysis

327

Amino Acids

35.25

Weight (kDa)

8.4

Isoelectric Point (pI)

37.51

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0009947)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G57080
fragaria_vesca	FvH4_6g25210
malus_domestica	MD00G1170800.v1.1 MD14G1084600.v1.1
prunus_persica	Prupe.7G043600_v2.0.a1 Prupe.7G043600_v2.0.a1 Prupe.7G043600_v2.0.a1
pyrus_communis	pycom12g07770 pycom14g07430
rosa_chinensis	RchiOBHm_Chr2g0125071
rosa_laevigata	RLG00000018847
rosa_multiflora	Rmu_sc0003505.1_g000022
rosa_roxburghii	Rroxscaffold_2G00118260 Rroxscaffold_2G00118720
rosa_rugosa	Rorug02G0255400 Rorug02G0255500.1
rosa_samantha	Rh2AG313900 Rh2BG322200 Rh2CG304500 Rh2DG340600
rosa_wichuraiana	Rw2G025400

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	138
AciI	CCGC	4 cut(s)	159, 180, 320, 344
AclWI	GGATC	4 cut(s)	210, 305, 873, 886
AcoI	YGGCCR	2 cut(s)	3, 397
AcuI	CTGAAG	2 cut(s)	770, 779
AcyI	GRCGYC	1 cut(s)	135
AfaI	GTAC	1 cut(s)	265
AfiI	CCNNNNNNNGG	4 cut(s)	41, 366, 604, 605
AgsI	TTSAA	2 cut(s)	497, 962
AjnI	CCWGG	3 cut(s)	406, 484, 537
AleI	CACNNNNGTG	1 cut(s)	362
Alw26I	GTCTC	3 cut(s)	259, 599, 965
AlwI	GGATC	4 cut(s)	210, 305, 873, 886
AoxI	GGCC	3 cut(s)	3, 385, 397
ApeKI	GCWGC	9 cut(s)	119, 122, 125, 500, 563, 682, 737, 923, 977
AspLEI	GCGC	1 cut(s)	199
AsuC2I	CCSGG	1 cut(s)	132
AsuHPI	GGTGA	2 cut(s)	4, 349
BalI	TGGCCA	2 cut(s)	5, 399
BamHI	GGATCC	1 cut(s)	878
BbvI	GCAGC	9 cut(s)	106, 109, 112, 487, 550, 694, 749, 935, 964
BccI	CCATC	1 cut(s)	852
BcgI	CGANNNNNNTGC	3 cut(s)	299, 333, 959
BciT130I	CCWGG	3 cut(s)	408, 486, 539
BclI	TGATCA	1 cut(s)	649
BcnI	CCSGG	1 cut(s)	132
BcoDI	GTCTC	3 cut(s)	259, 599, 965
BfaI	CTAG	6 cut(s)	455, 510, 552, 617, 701, 855
BfoI	RGCGCY	1 cut(s)	200
BlpI	GCTNAGC	1 cut(s)	827
Bme1390I	CCNGG	4 cut(s)	132, 408, 486, 539
BmiI	GGNNCC	2 cut(s)	324, 880
BmrFI	CCNGG	4 cut(s)	132, 408, 486, 539
BmsI	GCATC	3 cut(s)	331, 456, 679
BplI	GAGNNNNNCTC	2 cut(s)	436, 468
Bpu10I	CCTNAGC	1 cut(s)	209
Bpu1102I	GCTNAGC	1 cut(s)	827
BpuMI	CCSGG	1 cut(s)	132
BsaHI	GRCGYC	1 cut(s)	135
BsaI	GGTCTC	1 cut(s)	599
BsaJI	CCNNGG	3 cut(s)	407, 484, 485
BsaWI	WCCGGW	2 cut(s)	41, 374
BsaXI	ACNNNNNCTCC	2 cut(s)	23, 53
Bsc4I	CCNNNNNNNGG	4 cut(s)	41, 366, 604, 605
Bse3DI	GCAATG	3 cut(s)	729, 909, 933
BseBI	CCWGG	3 cut(s)	408, 486, 539
BseDI	CCNNGG	3 cut(s)	407, 484, 485
BseLI	CCNNNNNNNGG	4 cut(s)	41, 366, 604, 605
BseMI	GCAATG	3 cut(s)	729, 909, 933
BseMII	CTCAG	1 cut(s)	257
BseXI	GCAGC	9 cut(s)	106, 109, 112, 487, 550, 694, 749, 935, 964
BseYI	CCCAGC	3 cut(s)	34, 218, 589
BsgI	GTGCAG	1 cut(s)	204
BshFI	GGCC	3 cut(s)	5, 387, 399
BsiSI	CCGG	3 cut(s)	42, 132, 375
BsiWI	CGTACG	1 cut(s)	263
BslFI	GGGAC	2 cut(s)	60, 382
BslI	CCNNNNNNNGG	4 cut(s)	41, 366, 604, 605
BsmAI	GTCTC	3 cut(s)	259, 599, 965
BsmFI	GGGAC	2 cut(s)	60, 382
BsmI	GAATGC	1 cut(s)	310
BsnI	GGCC	3 cut(s)	5, 387, 399
Bso31I	GGTCTC	1 cut(s)	599
Bsp143I	GATC	6 cut(s)	202, 297, 649, 781, 835, 878
Bsp1720I	GCTNAGC	1 cut(s)	827
BspACI	CCGC	4 cut(s)	159, 180, 320, 344
BspANI	GGCC	3 cut(s)	5, 387, 399
BspCNI	CTCAG	1 cut(s)	256
BspHI	TCATGA	1 cut(s)	556
BspLI	GGNNCC	2 cut(s)	324, 880
BspPI	GGATC	4 cut(s)	210, 305, 873, 886
BspTNI	GGTCTC	1 cut(s)	599
BsrDI	GCAATG	3 cut(s)	729, 909, 933
BssECI	CCNNGG	3 cut(s)	407, 484, 485
BssMI	GATC	6 cut(s)	202, 297, 649, 781, 835, 878
BssNI	GRCGYC	1 cut(s)	135
Bst2UI	CCWGG	3 cut(s)	408, 486, 539
Bst4CI	ACNGT	2 cut(s)	361, 677
Bst6I	CTCTTC	3 cut(s)	279, 791, 798
BstACI	GRCGYC	1 cut(s)	135
BstC8I	GCNNGC	4 cut(s)	7, 397, 401, 818
BstDEI	CTNAG	5 cut(s)	209, 228, 243, 827, 981
BstH2I	RGCGCY	1 cut(s)	200
BstHHI	GCGC	1 cut(s)	199
BstKTI	GATC	6 cut(s)	205, 300, 652, 784, 838, 881
BstMAI	GTCTC	3 cut(s)	259, 599, 965
BstMBI	GATC	6 cut(s)	202, 297, 649, 781, 835, 878
BstMWI	GCNNNNNNNGC	7 cut(s)	125, 205, 224, 664, 719, 734, 920
BstNI	CCWGG	3 cut(s)	408, 486, 539
BstNSI	RCATGY	1 cut(s)	638
BstSCI	CCNGG	4 cut(s)	130, 406, 484, 537
BstV1I	GCAGC	9 cut(s)	106, 109, 112, 487, 550, 694, 749, 935, 964
BstX2I	RGATCY	1 cut(s)	878
BstXI	CCANNNNNNTGG	1 cut(s)	414
BstYI	RGATCY	1 cut(s)	878
BsuRI	GGCC	3 cut(s)	5, 387, 399
BtsI	GCAGTG	1 cut(s)	477
BtsIMutI	CAGTG	2 cut(s)	477, 682
Cac8I	GCNNGC	4 cut(s)	7, 397, 401, 818
CciI	TCATGA	1 cut(s)	556
CfoI	GCGC	1 cut(s)	199
CseI	GACGC	2 cut(s)	124, 319
Csp6I	GTAC	1 cut(s)	264
CviAII	CATG	4 cut(s)	16, 557, 635, 908
CviQI	GTAC	1 cut(s)	264
DdeI	CTNAG	5 cut(s)	209, 228, 243, 827, 981
DpnI	GATC	6 cut(s)	204, 299, 651, 783, 837, 880
DpnII	GATC	6 cut(s)	202, 297, 649, 781, 835, 878
EaeI	YGGCCR	2 cut(s)	3, 397
Eam1104I	CTCTTC	3 cut(s)	279, 791, 798
EarI	CTCTTC	3 cut(s)	279, 791, 798
Eco147I	AGGCCT	1 cut(s)	387
Eco31I	GGTCTC	1 cut(s)	599
Eco57I	CTGAAG	2 cut(s)	770, 779
EcoRII	CCWGG	3 cut(s)	406, 484, 537
EcoT22I	ATGCAT	1 cut(s)	909
FaeI	CATG	4 cut(s)	19, 560, 638, 911
FaqI	GGGAC	2 cut(s)	60, 382
FatI	CATG	4 cut(s)	15, 556, 634, 907
FauNDI	CATATG	1 cut(s)	250
FbaI	TGATCA	1 cut(s)	649
FblI	GTMKAC	1 cut(s)	138
FspBI	CTAG	6 cut(s)	455, 510, 552, 617, 701, 855
GlaI	GCGC	1 cut(s)	198
GsaI	CCCAGC	3 cut(s)	38, 222, 593
HaeII	RGCGCY	1 cut(s)	200
HaeIII	GGCC	3 cut(s)	5, 387, 399
HapII	CCGG	3 cut(s)	42, 132, 375
HgaI	GACGC	2 cut(s)	124, 319
HhaI	GCGC	1 cut(s)	199
Hin1I	GRCGYC	1 cut(s)	135
Hin1II	CATG	4 cut(s)	19, 560, 638, 911
Hin6I	GCGC	1 cut(s)	197
HinP1I	GCGC	1 cut(s)	197
HincII	GTYRAC	1 cut(s)	139
HindII	GTYRAC	1 cut(s)	139
HinfI	GANTC	4 cut(s)	87, 155, 378, 732
HpaII	CCGG	3 cut(s)	42, 132, 375
HphI	GGTGA	2 cut(s)	4, 349
Hpy166II	GTNNAC	1 cut(s)	139
Hpy188I	TCNGA	7 cut(s)	55, 92, 327, 335, 750, 798, 918
Hpy188III	TCNNGA	5 cut(s)	278, 301, 557, 617, 970
Hpy8I	GTNNAC	1 cut(s)	139
Hpy99I	CGWCG	1 cut(s)	140
HpyAV	CCTTC	2 cut(s)	398, 737
HpyCH4III	ACNGT	2 cut(s)	361, 677
HpyCH4V	TGCA	3 cut(s)	185, 692, 907
HpyF10VI	GCNNNNNNNGC	7 cut(s)	125, 205, 224, 664, 719, 734, 920
HpyF3I	CTNAG	5 cut(s)	209, 228, 243, 827, 981
Hsp92I	GRCGYC	1 cut(s)	135
Hsp92II	CATG	4 cut(s)	19, 560, 638, 911
HspAI	GCGC	1 cut(s)	197
Ksp22I	TGATCA	1 cut(s)	649
Kzo9I	GATC	6 cut(s)	202, 297, 649, 781, 835, 878
LmnI	GCTCC	2 cut(s)	133, 444
Lsp1109I	GCAGC	9 cut(s)	106, 109, 112, 487, 550, 694, 749, 935, 964
LweI	GCATC	3 cut(s)	331, 456, 679
MaeI	CTAG	6 cut(s)	455, 510, 552, 617, 701, 855
MalI	GATC	6 cut(s)	204, 299, 651, 783, 837, 880
MboI	GATC	6 cut(s)	202, 297, 649, 781, 835, 878
MboII	GAAGA	7 cut(s)	90, 99, 102, 266, 485, 778, 785
MflI	RGATCY	1 cut(s)	878
MlsI	TGGCCA	2 cut(s)	5, 399
MluCI	AATT	1 cut(s)	546
MluNI	TGGCCA	2 cut(s)	5, 399
MlyI	GAGTC	2 cut(s)	81, 726
MmeI	TCCRAC	1 cut(s)	78
MnlI	CCTC	7 cut(s)	49, 61, 124, 152, 161, 187, 893
Mox20I	TGGCCA	2 cut(s)	5, 399
Mph1103I	ATGCAT	1 cut(s)	909
MscI	TGGCCA	2 cut(s)	5, 399
MseI	TTAA	1 cut(s)	189
MslI	CAYNNNNRTG	1 cut(s)	362
Msp20I	TGGCCA	2 cut(s)	5, 399
MspA1I	CMGCKG	2 cut(s)	180, 977
MspI	CCGG	3 cut(s)	42, 132, 375
MspR9I	CCNGG	4 cut(s)	132, 408, 486, 539
Mva1269I	GAATGC	1 cut(s)	310
MvaI	CCWGG	3 cut(s)	408, 486, 539
MwoI	GCNNNNNNNGC	7 cut(s)	125, 205, 224, 664, 719, 734, 920
NciI	CCSGG	1 cut(s)	132
NdeI	CATATG	1 cut(s)	250
NdeII	GATC	6 cut(s)	202, 297, 649, 781, 835, 878
NlaIII	CATG	4 cut(s)	19, 560, 638, 911
NlaIV	GGNNCC	2 cut(s)	324, 880
NmeAIII	GCCGAG	1 cut(s)	238
NsiI	ATGCAT	1 cut(s)	909
NspI	RCATGY	1 cut(s)	638
OliI	CACNNNNGTG	1 cut(s)	362
PagI	TCATGA	1 cut(s)	556
PasI	CCCWGGG	1 cut(s)	485
PceI	AGGCCT	1 cut(s)	387
PctI	GAATGC	1 cut(s)	310
PfeI	GAWTC	2 cut(s)	155, 378
Pfl23II	CGTACG	1 cut(s)	263
PleI	GAGTC	2 cut(s)	81, 726
PpsI	GAGTC	2 cut(s)	81, 726
Psp6I	CCWGG	3 cut(s)	406, 484, 537
PspFI	CCCAGC	3 cut(s)	34, 218, 589
PspGI	CCWGG	3 cut(s)	406, 484, 537
PspLI	CGTACG	1 cut(s)	263
PspN4I	GGNNCC	2 cut(s)	324, 880
PsuI	RGATCY	1 cut(s)	878
PvuII	CAGCTG	1 cut(s)	977
RsaI	GTAC	1 cut(s)	265
RsaNI	GTAC	1 cut(s)	264
RseI	CAYNNNNRTG	1 cut(s)	362
SalI	GTCGAC	1 cut(s)	137
SaqAI	TTAA	1 cut(s)	189
Sau3AI	GATC	6 cut(s)	202, 297, 649, 781, 835, 878
SchI	GAGTC	2 cut(s)	81, 726
ScrFI	CCNGG	4 cut(s)	132, 408, 486, 539
SfaNI	GCATC	3 cut(s)	331, 456, 679
SmiMI	CAYNNNNRTG	1 cut(s)	362
Sse9I	AATT	1 cut(s)	546
SseBI	AGGCCT	1 cut(s)	387
SsiI	CCGC	4 cut(s)	159, 180, 320, 344
SspMI	CTAG	6 cut(s)	455, 510, 552, 617, 701, 855
StuI	AGGCCT	1 cut(s)	387
StyD4I	CCNGG	4 cut(s)	130, 406, 484, 537
TaaI	ACNGT	2 cut(s)	361, 677
TaqI	TCGA	4 cut(s)	138, 153, 165, 969
TasI	AATT	1 cut(s)	546
TauI	GCSGC	1 cut(s)	347
TfiI	GAWTC	2 cut(s)	155, 378
Tru1I	TTAA	1 cut(s)	189
Tru9I	TTAA	1 cut(s)	189
TscAI	CASTG	2 cut(s)	484, 682
TseI	GCWGC	9 cut(s)	119, 122, 125, 500, 563, 682, 737, 923, 977
TspDTI	ATGAA	5 cut(s)	50, 370, 507, 573, 924
TspRI	CASTG	2 cut(s)	484, 682
XbaI	TCTAGA	1 cut(s)	616
XceI	RCATGY	1 cut(s)	638
XmiI	GTMKAC	1 cut(s)	138
XspI	CTAG	6 cut(s)	455, 510, 552, 617, 701, 855
Zsp2I	ATGCAT	1 cut(s)	909

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.