Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr12

Orthogroup ID

OG0009947

Physical Location & Seq

Genomic Coordinates Reverse (-)

8469970 .. 8473854

Gene Structure 3885 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom12g07770.3

Sequence Viewer

CDS Protein Promoter (2k)

Length: 690 bp

ATGGACGTGGAGGGAGAGCCGGCGAATGGGGAAAGCAACGGGGAGATTCTGGGGCCTTGCTTGACCAGCCACATAGACGAAGGTAGCGCAGAGAGCCACAGATACTACCTCTCACGGAGGACGGTGCTGGAGATGCTGAGGGACAGAGGCTATTCTGTTCCCGCCTCCGAAATCGACCTCTCTCTCCAAGACTTCCGCTTCCTCCACGGTCCCACTCCCGATATCGAGCGCCTCCGCTTCTCCGCCACTCATTGCACGGACCCTTCTGACAGGATGCTGGTCATTTACTGTGGCCCAGGTATTGTGAAGGTTAATGTGATTCGTGGGCTACACTCTCAGATTGCTAATAAGGACACTTTGACGGGGCTCATATTAATTACCCAAAACCAAGTAACAAACCAAGCTCTAAAAACTCTGGAACTTTATCCGTTTAAAACTGAAATATTTCAGATTACCGACTTGCTTGTTAACATCACAAAGCATGTCTTGAAGCCAAAGCATCGGGTGCTGACAGACAAAGAGAAAGGAAAACTCCTAAAGAAGTACAACATAGAAGAAAAGCAGCTTCCCCGACTGTCACGAAAAGATGCAATTTCACGGTACTATGGACTTGAGAAGGGGCAGGTAGTGAAAGTTACTTACACTGGTGATATTACCGAGTCTCATGTTACATACCGTTGCATCTGGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000418 GO:0000419 GO:0000428 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005665 GO:0005666 GO:0005730 GO:0005736 GO:0016591 GO:0030880 GO:0031974 GO:0031981 GO:0032991 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044451 GO:0044452 GO:0044464 GO:0055029 GO:0061695 GO:0070013 GO:1902494 GO:1990234

KEGG Pathways

Metabolic & Signaling

ko00230 ko00240 ko01100 ko03020 ko04623 ko05016 ko05169 map00230 map00240 map01100 map03020 map04623 map05016 map05169

Pfam Domains

Protein Families

RNA_pol_Rpb5_C RNA_pol_Rpb5_N

Protein Analysis

230

Amino Acids

26.08

Weight (kDa)

8.27

Isoelectric Point (pI)

33.39

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0009947)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G57080
fragaria_vesca	FvH4_6g25210
malus_domestica	MD00G1170800.v1.1 MD14G1084600.v1.1
prunus_persica	Prupe.7G043600_v2.0.a1 Prupe.7G043600_v2.0.a1 Prupe.7G043600_v2.0.a1
pyrus_communis	pycom12g07770 pycom14g07430
rosa_chinensis	RchiOBHm_Chr2g0125071
rosa_laevigata	RLG00000018847
rosa_multiflora	Rmu_sc0003505.1_g000022
rosa_roxburghii	Rroxscaffold_2G00118260 Rroxscaffold_2G00118720
rosa_rugosa	Rorug02G0255400 Rorug02G0255500.1
rosa_samantha	Rh2AG313900 Rh2BG322200 Rh2CG304500 Rh2DG340600
rosa_wichuraiana	Rw2G025400

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	613
AciI	CCGC	4 cut(s)	162, 196, 235, 243
AfaI	GTAC	2 cut(s)	545, 602
AfiI	CCNNNNNNNGG	1 cut(s)	26
AgsI	TTSAA	1 cut(s)	490
AjiI	CACGTC	1 cut(s)	7
AjnI	CCWGG	1 cut(s)	295
AluBI	AGCT	2 cut(s)	404, 565
AluI	AGCT	2 cut(s)	404, 565
Alw26I	GTCTC	1 cut(s)	666
AoxI	GGCC	2 cut(s)	53, 292
ApeKI	GCWGC	1 cut(s)	562
AseI	ATTAAT	1 cut(s)	374
Asp700I	GAANNNNTTC	1 cut(s)	444
AspLEI	GCGC	2 cut(s)	89, 231
AspS9I	GGNCC	4 cut(s)	53, 209, 259, 293
AsuHPI	GGTGA	1 cut(s)	659
AvaII	GGWCC	2 cut(s)	209, 259
BanII	GRGCYC	1 cut(s)	369
BbvCI	CCTCAGC	1 cut(s)	137
BbvI	GCAGC	1 cut(s)	574
BciT130I	CCWGG	1 cut(s)	297
BcoDI	GTCTC	1 cut(s)	666
BfoI	RGCGCY	1 cut(s)	232
BfuAI	ACCTGC	1 cut(s)	613
BisI	GCNGC	1 cut(s)	563
BlsI	GCNGC	1 cut(s)	564
Bme1390I	CCNGG	1 cut(s)	297
Bme18I	GGWCC	2 cut(s)	209, 259
BmgBI	CACGTC	1 cut(s)	7
BmgT120I	GGNCC	4 cut(s)	53, 209, 259, 293
BmiI	GGNNCC	3 cut(s)	54, 211, 261
BmrFI	CCNGG	1 cut(s)	297
BmsI	GCATC	4 cut(s)	123, 264, 508, 577
BpmI	CTGGAG	1 cut(s)	149
Bpu10I	CCTNAGC	1 cut(s)	137
BpuEI	CTTGAG	1 cut(s)	632
BsaJI	CCNNGG	2 cut(s)	205, 295
Bsc4I	CCNNNNNNNGG	1 cut(s)	26
Bse118I	RCCGGY	1 cut(s)	19
Bse1I	ACTGG	1 cut(s)	649
Bse3DI	GCAATG	1 cut(s)	250
BseBI	CCWGG	1 cut(s)	297
BseDI	CCNNGG	2 cut(s)	205, 295
BseGI	GGATG	1 cut(s)	279
BseLI	CCNNNNNNNGG	1 cut(s)	26
BseMI	GCAATG	1 cut(s)	250
BseMII	CTCAG	2 cut(s)	128, 350
BseNI	ACTGG	1 cut(s)	649
BseXI	GCAGC	1 cut(s)	574
BshFI	GGCC	2 cut(s)	55, 294
BsiSI	CCGG	1 cut(s)	20
BslFI	GGGAC	2 cut(s)	155, 195
BslI	CCNNNNNNNGG	1 cut(s)	26
BsmAI	GTCTC	1 cut(s)	666
BsmFI	GGGAC	2 cut(s)	155, 195
BsnI	GGCC	2 cut(s)	55, 294
Bsp1286I	GDGCHC	1 cut(s)	369
BspACI	CCGC	4 cut(s)	162, 196, 235, 243
BspANI	GGCC	2 cut(s)	55, 294
BspCNI	CTCAG	2 cut(s)	129, 349
BspLI	GGNNCC	3 cut(s)	54, 211, 261
BspMI	ACCTGC	1 cut(s)	613
BsrDI	GCAATG	1 cut(s)	250
BsrFI	RCCGGY	1 cut(s)	19
BsrI	ACTGG	1 cut(s)	649
BssAI	RCCGGY	1 cut(s)	19
BssECI	CCNNGG	2 cut(s)	205, 295
Bst2UI	CCWGG	1 cut(s)	297
Bst4CI	ACNGT	6 cut(s)	124, 209, 290, 576, 600, 677
BstAPI	GCANNNNNTGC	1 cut(s)	505
BstC8I	GCNNGC	1 cut(s)	21
BstDEI	CTNAG	2 cut(s)	137, 336
BstDSI	CCRYGG	1 cut(s)	205
BstF5I	GGATG	1 cut(s)	279
BstH2I	RGCGCY	1 cut(s)	232
BstHHI	GCGC	2 cut(s)	89, 231
BstMAI	GTCTC	1 cut(s)	666
BstMWI	GCNNNNNNNGC	4 cut(s)	66, 93, 133, 505
BstNI	CCWGG	1 cut(s)	297
BstNSI	RCATGY	1 cut(s)	485
BstSCI	CCNGG	1 cut(s)	295
BstV1I	GCAGC	1 cut(s)	574
BsuRI	GGCC	2 cut(s)	55, 294
BtgI	CCRYGG	1 cut(s)	205
BtrI	CACGTC	1 cut(s)	7
BtsCI	GGATG	1 cut(s)	279
BtsIMutI	CAGTG	1 cut(s)	642
BveI	ACCTGC	1 cut(s)	613
Cac8I	GCNNGC	1 cut(s)	21
CfoI	GCGC	2 cut(s)	89, 231
Cfr10I	RCCGGY	1 cut(s)	19
Cfr13I	GGNCC	4 cut(s)	53, 209, 259, 293
Csp6I	GTAC	2 cut(s)	544, 601
CviAII	CATG	2 cut(s)	482, 665
CviQI	GTAC	2 cut(s)	544, 601
DdeI	CTNAG	2 cut(s)	137, 336
DraI	TTTAAA	1 cut(s)	433
EciI	GGCGGA	1 cut(s)	232
Eco24I	GRGCYC	1 cut(s)	369
Eco32I	GATATC	1 cut(s)	223
Eco47I	GGWCC	2 cut(s)	209, 259
EcoO109I	RGGNCCY	1 cut(s)	53
EcoRII	CCWGG	1 cut(s)	295
EcoRV	GATATC	1 cut(s)	223
EcoT38I	GRGCYC	1 cut(s)	369
FaeI	CATG	2 cut(s)	485, 668
FaiI	YATR	7 cut(s)	74, 371, 483, 551, 606, 666, 673
FalI	AAGNNNNNCTT	2 cut(s)	470, 502
FaqI	GGGAC	2 cut(s)	155, 195
FatI	CATG	2 cut(s)	481, 664
FauI	CCCGC	1 cut(s)	169
Fnu4HI	GCNGC	1 cut(s)	563
FokI	GGATG	1 cut(s)	286
FriOI	GRGCYC	1 cut(s)	369
Fsp4HI	GCNGC	1 cut(s)	563
GlaI	GCGC	2 cut(s)	88, 230
GluI	GCNGC	1 cut(s)	563
GsuI	CTGGAG	1 cut(s)	149
HaeII	RGCGCY	1 cut(s)	232
HaeIII	GGCC	2 cut(s)	55, 294
HapII	CCGG	1 cut(s)	20
HhaI	GCGC	2 cut(s)	89, 231
Hin1II	CATG	2 cut(s)	485, 668
Hin6I	GCGC	2 cut(s)	87, 229
HinP1I	GCGC	2 cut(s)	87, 229
HincII	GTYRAC	1 cut(s)	469
HindII	GTYRAC	1 cut(s)	469
HinfI	GANTC	3 cut(s)	46, 319, 659
HpaI	GTTAAC	1 cut(s)	469
HpaII	CCGG	1 cut(s)	20
HphI	GGTGA	1 cut(s)	659
Hpy166II	GTNNAC	1 cut(s)	469
Hpy188I	TCNGA	4 cut(s)	169, 268, 339, 450
Hpy188III	TCNNGA	4 cut(s)	218, 416, 487, 579
Hpy8I	GTNNAC	1 cut(s)	469
HpyAV	CCTTC	4 cut(s)	74, 273, 301, 610
HpyCH4III	ACNGT	6 cut(s)	124, 209, 290, 576, 600, 677
HpyCH4IV	ACGT	1 cut(s)	6
HpyCH4V	TGCA	3 cut(s)	255, 590, 681
HpyF10VI	GCNNNNNNNGC	4 cut(s)	66, 93, 133, 505
HpyF3I	CTNAG	2 cut(s)	137, 336
HpySE526I	ACGT	1 cut(s)	6
Hsp92II	CATG	2 cut(s)	485, 668
HspAI	GCGC	2 cut(s)	87, 229
KroI	GCCGGC	1 cut(s)	19
KroNI	GCCGGC	1 cut(s)	21
KspAI	GTTAAC	1 cut(s)	469
Lsp1109I	GCAGC	1 cut(s)	574
LweI	GCATC	4 cut(s)	123, 264, 508, 577
MaeII	ACGT	1 cut(s)	6
MaeIII	GTNAC	4 cut(s)	391, 576, 634, 667
MboII	GAAGA	1 cut(s)	566
MhlI	GDGCHC	1 cut(s)	369
MluCI	AATT	2 cut(s)	375, 591
MlyI	GAGTC	1 cut(s)	668
MnlI	CCTC	9 cut(s)	4, 111, 119, 132, 140, 175, 188, 212, 242
MroNI	GCCGGC	1 cut(s)	19
MroXI	GAANNNNTTC	1 cut(s)	444
MseI	TTAA	4 cut(s)	312, 374, 432, 468
MspI	CCGG	1 cut(s)	20
MspR9I	CCNGG	1 cut(s)	297
MvaI	CCWGG	1 cut(s)	297
MwoI	GCNNNNNNNGC	4 cut(s)	66, 93, 133, 505
NaeI	GCCGGC	1 cut(s)	21
NgoMIV	GCCGGC	1 cut(s)	19
NlaIII	CATG	2 cut(s)	485, 668
NlaIV	GGNNCC	3 cut(s)	54, 211, 261
NmuCI	GTSAC	1 cut(s)	576
NspI	RCATGY	1 cut(s)	485
PdiI	GCCGGC	1 cut(s)	21
PdmI	GAANNNNTTC	1 cut(s)	444
PfeI	GAWTC	2 cut(s)	46, 319
PkrI	GCNGC	1 cut(s)	564
PleI	GAGTC	1 cut(s)	667
PpsI	GAGTC	1 cut(s)	667
PshBI	ATTAAT	1 cut(s)	374
Psp6I	CCWGG	1 cut(s)	295
PspGI	CCWGG	1 cut(s)	295
PspN4I	GGNNCC	3 cut(s)	54, 211, 261
PspPI	GGNCC	4 cut(s)	53, 209, 259, 293
RsaI	GTAC	2 cut(s)	545, 602
RsaNI	GTAC	2 cut(s)	544, 601
SaqAI	TTAA	4 cut(s)	312, 374, 432, 468
SatI	GCNGC	1 cut(s)	563
Sau96I	GGNCC	4 cut(s)	53, 209, 259, 293
SchI	GAGTC	1 cut(s)	668
ScrFI	CCNGG	1 cut(s)	297
SduI	GDGCHC	1 cut(s)	369
SetI	ASST	9 cut(s)	9, 85, 111, 180, 301, 312, 406, 567, 627
SfaNI	GCATC	4 cut(s)	123, 264, 508, 577
SinI	GGWCC	2 cut(s)	209, 259
SmlI	CTYRAG	1 cut(s)	611
SmoI	CTYRAG	1 cut(s)	611
Sse9I	AATT	2 cut(s)	375, 591
SsiI	CCGC	4 cut(s)	162, 196, 235, 243
SspI	AATATT	1 cut(s)	444
StyD4I	CCNGG	1 cut(s)	295
TaaI	ACNGT	6 cut(s)	124, 209, 290, 576, 600, 677
TaiI	ACGT	1 cut(s)	9
TaqI	TCGA	2 cut(s)	174, 225
TasI	AATT	2 cut(s)	375, 591
TatI	WGTACW	1 cut(s)	543
TfiI	GAWTC	2 cut(s)	46, 319
Tru1I	TTAA	4 cut(s)	312, 374, 432, 468
Tru9I	TTAA	4 cut(s)	312, 374, 432, 468
TscAI	CASTG	1 cut(s)	649
TseFI	GTSAC	1 cut(s)	576
TseI	GCWGC	1 cut(s)	562
Tsp45I	GTSAC	1 cut(s)	576
TspGWI	ACGGA	3 cut(s)	130, 272, 417
TspRI	CASTG	1 cut(s)	649
VpaK11BI	GGWCC	2 cut(s)	209, 259
VspI	ATTAAT	1 cut(s)	374
XceI	RCATGY	1 cut(s)	485
XmnI	GAANNNNTTC	1 cut(s)	444

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.