DNA-directed RNA
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| Species | Orthologous Gene IDs |
|---|---|
| arabidopsis_thaliana | AT3G57080 |
| fragaria_vesca | FvH4_6g25210 |
| malus_domestica | MD00G1170800.v1.1 MD14G1084600.v1.1 |
| prunus_persica | Prupe.7G043600_v2.0.a1 Prupe.7G043600_v2.0.a1 Prupe.7G043600_v2.0.a1 |
| pyrus_communis | pycom12g07770 pycom14g07430 |
| rosa_chinensis | RchiOBHm_Chr2g0125071 |
| rosa_laevigata | RLG00000018847 |
| rosa_multiflora | Rmu_sc0003505.1_g000022 |
| rosa_roxburghii | Rroxscaffold_2G00118260 Rroxscaffold_2G00118720 |
| rosa_rugosa | Rorug02G0255400 Rorug02G0255500.1 |
| rosa_samantha | Rh2AG313900 Rh2BG322200 Rh2CG304500 Rh2DG340600 |
| rosa_wichuraiana | Rw2G025400 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| Acc36I | ACCTGC | 1 cut(s) | 610 |
| AccI | GTMKAC | 1 cut(s) | 72 |
| AccIII | TCCGGA | 1 cut(s) | 214 |
| AciI | CCGC | 3 cut(s) | 232, 240, 288 |
| AcoI | YGGCCR | 1 cut(s) | 205 |
| AfaI | GTAC | 3 cut(s) | 504, 542, 599 |
| AfiI | CCNNNNNNNGG | 1 cut(s) | 214 |
| AflIII | ACRYGT | 1 cut(s) | 661 |
| AgsI | TTSAA | 2 cut(s) | 358, 487 |
| AjnI | CCWGG | 1 cut(s) | 292 |
| AluBI | AGCT | 2 cut(s) | 401, 562 |
| AluI | AGCT | 2 cut(s) | 401, 562 |
| Aor13HI | TCCGGA | 1 cut(s) | 214 |
| AoxI | GGCC | 3 cut(s) | 50, 205, 290 |
| ApeKI | GCWGC | 1 cut(s) | 325 |
| AseI | ATTAAT | 1 cut(s) | 371 |
| AspLEI | GCGC | 1 cut(s) | 228 |
| AspS9I | GGNCC | 2 cut(s) | 50, 290 |
| AsuHPI | GGTGA | 2 cut(s) | 20, 656 |
| BanII | GRGCYC | 2 cut(s) | 199, 366 |
| BbvI | GCAGC | 1 cut(s) | 312 |
| BceAI | ACGGC | 1 cut(s) | 220 |
| BciT130I | CCWGG | 1 cut(s) | 294 |
| BfoI | RGCGCY | 1 cut(s) | 229 |
| BfuAI | ACCTGC | 1 cut(s) | 610 |
| BisI | GCNGC | 1 cut(s) | 326 |
| BlsI | GCNGC | 1 cut(s) | 327 |
| BmcAI | AGTACT | 1 cut(s) | 599 |
| Bme1390I | CCNGG | 1 cut(s) | 294 |
| BmgT120I | GGNCC | 2 cut(s) | 50, 290 |
| BmrFI | CCNGG | 1 cut(s) | 294 |
| BmsI | GCATC | 3 cut(s) | 19, 505, 574 |
| BpmI | CTGGAG | 1 cut(s) | 146 |
| BpuEI | CTTGAG | 1 cut(s) | 629 |
| BsaWI | WCCGGW | 1 cut(s) | 214 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 513, 543 |
| Bsc4I | CCNNNNNNNGG | 1 cut(s) | 214 |
| Bse1I | ACTGG | 2 cut(s) | 67, 646 |
| BseAI | TCCGGA | 1 cut(s) | 214 |
| BseBI | CCWGG | 1 cut(s) | 294 |
| BseGI | GGATG | 1 cut(s) | 223 |
| BseLI | CCNNNNNNNGG | 1 cut(s) | 214 |
| BseMII | CTCAG | 1 cut(s) | 347 |
| BseNI | ACTGG | 2 cut(s) | 67, 646 |
| BseXI | GCAGC | 1 cut(s) | 312 |
| BshFI | GGCC | 3 cut(s) | 52, 207, 292 |
| BsiSI | CCGG | 1 cut(s) | 215 |
| BslFI | GGGAC | 1 cut(s) | 152 |
| BslI | CCNNNNNNNGG | 1 cut(s) | 214 |
| BsmFI | GGGAC | 1 cut(s) | 152 |
| BsmI | GAATGC | 1 cut(s) | 328 |
| BsnI | GGCC | 3 cut(s) | 52, 207, 292 |
| Bsp1286I | GDGCHC | 2 cut(s) | 199, 366 |
| Bsp13I | TCCGGA | 1 cut(s) | 214 |
| BspACI | CCGC | 3 cut(s) | 232, 240, 288 |
| BspANI | GGCC | 3 cut(s) | 52, 207, 292 |
| BspCNI | CTCAG | 1 cut(s) | 346 |
| BspEI | TCCGGA | 1 cut(s) | 214 |
| BspMI | ACCTGC | 1 cut(s) | 610 |
| BsrI | ACTGG | 2 cut(s) | 67, 646 |
| Bst2UI | CCWGG | 1 cut(s) | 294 |
| Bst4CI | ACNGT | 4 cut(s) | 121, 573, 597, 674 |
| BstC8I | GCNNGC | 1 cut(s) | 290 |
| BstDEI | CTNAG | 1 cut(s) | 333 |
| BstF5I | GGATG | 1 cut(s) | 223 |
| BstH2I | RGCGCY | 1 cut(s) | 229 |
| BstHHI | GCGC | 1 cut(s) | 228 |
| BstMWI | GCNNNNNNNGC | 2 cut(s) | 63, 90 |
| BstNI | CCWGG | 1 cut(s) | 294 |
| BstNSI | RCATGY | 2 cut(s) | 482, 665 |
| BstSCI | CCNGG | 1 cut(s) | 292 |
| BstV1I | GCAGC | 1 cut(s) | 312 |
| BsuRI | GGCC | 3 cut(s) | 52, 207, 292 |
| BtgZI | GCGATG | 2 cut(s) | 42, 233 |
| BtsCI | GGATG | 1 cut(s) | 223 |
| BtsIMutI | CAGTG | 1 cut(s) | 252 |
| BveI | ACCTGC | 1 cut(s) | 610 |
| Cac8I | GCNNGC | 1 cut(s) | 290 |
| CfoI | GCGC | 1 cut(s) | 228 |
| Cfr13I | GGNCC | 2 cut(s) | 50, 290 |
| CseI | GACGC | 1 cut(s) | 20 |
| Csp6I | GTAC | 3 cut(s) | 503, 541, 598 |
| CviAII | CATG | 3 cut(s) | 479, 500, 662 |
| CviQI | GTAC | 3 cut(s) | 503, 541, 598 |
| DdeI | CTNAG | 1 cut(s) | 333 |
| DraI | TTTAAA | 1 cut(s) | 430 |
| EaeI | YGGCCR | 1 cut(s) | 205 |
| Eco24I | GRGCYC | 2 cut(s) | 199, 366 |
| EcoO109I | RGGNCCY | 1 cut(s) | 50 |
| EcoRII | CCWGG | 1 cut(s) | 292 |
| EcoT38I | GRGCYC | 2 cut(s) | 199, 366 |
| FaeI | CATG | 3 cut(s) | 482, 503, 665 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 467, 499 |
| FaqI | GGGAC | 1 cut(s) | 152 |
| FatI | CATG | 3 cut(s) | 478, 499, 661 |
| FauI | CCCGC | 1 cut(s) | 281 |
| FblI | GTMKAC | 1 cut(s) | 72 |
| Fnu4HI | GCNGC | 1 cut(s) | 326 |
| FokI | GGATG | 1 cut(s) | 230 |
| FriOI | GRGCYC | 2 cut(s) | 199, 366 |
| Fsp4HI | GCNGC | 1 cut(s) | 326 |
| GlaI | GCGC | 1 cut(s) | 227 |
| GluI | GCNGC | 1 cut(s) | 326 |
| GsuI | CTGGAG | 1 cut(s) | 146 |
| HaeII | RGCGCY | 1 cut(s) | 229 |
| HaeIII | GGCC | 3 cut(s) | 52, 207, 292 |
| HapII | CCGG | 1 cut(s) | 215 |
| HgaI | GACGC | 1 cut(s) | 20 |
| HhaI | GCGC | 1 cut(s) | 228 |
| Hin1II | CATG | 3 cut(s) | 482, 503, 665 |
| Hin6I | GCGC | 1 cut(s) | 226 |
| HinP1I | GCGC | 1 cut(s) | 226 |
| HinfI | GANTC | 3 cut(s) | 211, 316, 656 |
| HpaII | CCGG | 1 cut(s) | 215 |
| HphI | GGTGA | 2 cut(s) | 20, 656 |
| Hpy166II | GTNNAC | 1 cut(s) | 73 |
| Hpy188I | TCNGA | 3 cut(s) | 166, 265, 336 |
| Hpy188III | TCNNGA | 5 cut(s) | 215, 301, 445, 484, 576 |
| Hpy8I | GTNNAC | 1 cut(s) | 73 |
| Hpy99I | CGWCG | 1 cut(s) | 80 |
| HpyAV | CCTTC | 4 cut(s) | 209, 270, 298, 607 |
| HpyCH4III | ACNGT | 4 cut(s) | 121, 573, 597, 674 |
| HpyCH4V | TGCA | 4 cut(s) | 328, 587, 593, 678 |
| HpyF10VI | GCNNNNNNNGC | 2 cut(s) | 63, 90 |
| HpyF3I | CTNAG | 1 cut(s) | 333 |
| Hsp92II | CATG | 3 cut(s) | 482, 503, 665 |
| HspAI | GCGC | 1 cut(s) | 226 |
| Kpn2I | TCCGGA | 1 cut(s) | 214 |
| Lsp1109I | GCAGC | 1 cut(s) | 312 |
| LweI | GCATC | 3 cut(s) | 19, 505, 574 |
| MaeIII | GTNAC | 5 cut(s) | 8, 108, 631, 657, 664 |
| MboII | GAAGA | 1 cut(s) | 563 |
| MfeI | CAATTG | 1 cut(s) | 588 |
| MhlI | GDGCHC | 2 cut(s) | 199, 366 |
| MluCI | AATT | 2 cut(s) | 372, 588 |
| MlyI | GAGTC | 1 cut(s) | 665 |
| MnlI | CCTC | 4 cut(s) | 10, 137, 185, 239 |
| MroI | TCCGGA | 1 cut(s) | 214 |
| MseI | TTAA | 4 cut(s) | 309, 371, 429, 465 |
| MspI | CCGG | 1 cut(s) | 215 |
| MspR9I | CCNGG | 1 cut(s) | 294 |
| MunI | CAATTG | 1 cut(s) | 588 |
| Mva1269I | GAATGC | 1 cut(s) | 328 |
| MvaI | CCWGG | 1 cut(s) | 294 |
| MwoI | GCNNNNNNNGC | 2 cut(s) | 63, 90 |
| NlaIII | CATG | 3 cut(s) | 482, 503, 665 |
| NmuCI | GTSAC | 3 cut(s) | 8, 108, 657 |
| NspI | RCATGY | 2 cut(s) | 482, 665 |
| PciI | ACATGT | 1 cut(s) | 661 |
| PctI | GAATGC | 1 cut(s) | 328 |
| PfeI | GAWTC | 2 cut(s) | 211, 316 |
| PkrI | GCNGC | 1 cut(s) | 327 |
| PleI | GAGTC | 1 cut(s) | 664 |
| PpsI | GAGTC | 1 cut(s) | 664 |
| PscI | ACATGT | 1 cut(s) | 661 |
| PshBI | ATTAAT | 1 cut(s) | 371 |
| Psp6I | CCWGG | 1 cut(s) | 292 |
| PspGI | CCWGG | 1 cut(s) | 292 |
| PspPI | GGNCC | 2 cut(s) | 50, 290 |
| RsaI | GTAC | 3 cut(s) | 504, 542, 599 |
| RsaNI | GTAC | 3 cut(s) | 503, 541, 598 |
| SaqAI | TTAA | 4 cut(s) | 309, 371, 429, 465 |
| SatI | GCNGC | 1 cut(s) | 326 |
| Sau96I | GGNCC | 2 cut(s) | 50, 290 |
| ScaI | AGTACT | 1 cut(s) | 599 |
| SchI | GAGTC | 1 cut(s) | 665 |
| ScrFI | CCNGG | 1 cut(s) | 294 |
| SduI | GDGCHC | 2 cut(s) | 199, 366 |
| SetI | ASST | 8 cut(s) | 10, 108, 177, 309, 403, 564, 624, 638 |
| SfaNI | GCATC | 3 cut(s) | 19, 505, 574 |
| SmlI | CTYRAG | 1 cut(s) | 608 |
| SmoI | CTYRAG | 1 cut(s) | 608 |
| Sse9I | AATT | 2 cut(s) | 372, 588 |
| SsiI | CCGC | 3 cut(s) | 232, 240, 288 |
| SspI | AATATT | 1 cut(s) | 441 |
| StyD4I | CCNGG | 1 cut(s) | 292 |
| TaaI | ACNGT | 4 cut(s) | 121, 573, 597, 674 |
| TaqI | TCGA | 2 cut(s) | 171, 193 |
| TaqII | GACCGA | 1 cut(s) | 524 |
| TasI | AATT | 2 cut(s) | 372, 588 |
| TatI | WGTACW | 3 cut(s) | 502, 540, 597 |
| TfiI | GAWTC | 2 cut(s) | 211, 316 |
| Tru1I | TTAA | 4 cut(s) | 309, 371, 429, 465 |
| Tru9I | TTAA | 4 cut(s) | 309, 371, 429, 465 |
| TscAI | CASTG | 1 cut(s) | 259 |
| TseFI | GTSAC | 3 cut(s) | 8, 108, 657 |
| TseI | GCWGC | 1 cut(s) | 325 |
| Tsp45I | GTSAC | 3 cut(s) | 8, 108, 657 |
| TspGWI | ACGGA | 1 cut(s) | 93 |
| TspRI | CASTG | 1 cut(s) | 259 |
| VspI | ATTAAT | 1 cut(s) | 371 |
| XceI | RCATGY | 2 cut(s) | 482, 665 |
| XmiI | GTMKAC | 1 cut(s) | 72 |
| ZrmI | AGTACT | 1 cut(s) | 599 |