FvH4_6g27090

No description available

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb6
Physical Location & Seq
Forward (+)
20792849 .. 20794606
1758 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_6g27090.t1

Sequence Viewer

Length: 234 bp
ATGTGTTCTTCAGAAGGAGATTGCAGGCCTTTGGGTTTCCTACTCGGCCTTCCCTTTGCTTTTCTCTCCCTCCTCCTCTCCGTCGTCGGCATCGTCATCTGGATCGTCGGATTGTTGCTGACATGCATCTGCCCCTGCTGCTTGTGCGTGACGGTGATAGTGGAGCTGGCTCTGGAGTTGGTCAAGGCCCCAATTCATGTCATGGAGTGGTTCACCTCTCAAATCCCCTGTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

78

Amino Acids

8.35

Weight (kDa)

4.57

Isoelectric Point (pI)

20.63

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Orthologous Genes (Group: OG0014990)

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AclWI GGATC 1 cut(s) 110
AluBI AGCT 1 cut(s) 166
AluI AGCT 1 cut(s) 166
AlwI GGATC 1 cut(s) 110
AoxI GGCC 3 cut(s) 26, 46, 186
ApeKI GCWGC 1 cut(s) 138
AspS9I GGNCC 1 cut(s) 187
AsuHPI GGTGA 2 cut(s) 166, 205
BbvI GCAGC 1 cut(s) 125
BisI GCNGC 1 cut(s) 139
BlsI GCNGC 1 cut(s) 140
BmgT120I GGNCC 1 cut(s) 187
BmiI GGNNCC 1 cut(s) 189
BmsI GCATC 2 cut(s) 99, 135
BpmI CTGGAG 1 cut(s) 194
BseRI GAGGAG 2 cut(s) 62, 65
BseXI GCAGC 1 cut(s) 125
BshFI GGCC 3 cut(s) 28, 48, 188
BsnI GGCC 3 cut(s) 28, 48, 188
Bsp143I GATC 1 cut(s) 102
BspANI GGCC 3 cut(s) 28, 48, 188
BspLI GGNNCC 1 cut(s) 189
BspPI GGATC 1 cut(s) 110
BssMI GATC 1 cut(s) 102
Bst4CI ACNGT 1 cut(s) 154
BstC8I GCNNGC 2 cut(s) 26, 168
BstKTI GATC 1 cut(s) 105
BstMBI GATC 1 cut(s) 102
BstMWI GCNNNNNNNGC 2 cut(s) 138, 144
BstNSI RCATGY 1 cut(s) 126
BstV1I GCAGC 1 cut(s) 125
BsuRI GGCC 3 cut(s) 28, 48, 188
Cac8I GCNNGC 2 cut(s) 26, 168
Cfr13I GGNCC 1 cut(s) 187
CviAII CATG 3 cut(s) 123, 197, 202
CviJI RGCY 5 cut(s) 28, 48, 166, 170, 188
CviKI_1 RGCY 5 cut(s) 28, 48, 166, 170, 188
DpnI GATC 1 cut(s) 104
DpnII GATC 1 cut(s) 102
Eco147I AGGCCT 1 cut(s) 28
EcoO109I RGGNCCY 1 cut(s) 187
EcoT22I ATGCAT 1 cut(s) 128
FaeI CATG 3 cut(s) 126, 200, 205
FaiI YATR 3 cut(s) 124, 198, 203
FatI CATG 3 cut(s) 122, 196, 201
Fnu4HI GCNGC 1 cut(s) 139
Fsp4HI GCNGC 1 cut(s) 139
GluI GCNGC 1 cut(s) 139
GsuI CTGGAG 1 cut(s) 194
HaeIII GGCC 3 cut(s) 28, 48, 188
Hin1II CATG 3 cut(s) 126, 200, 205
HphI GGTGA 2 cut(s) 166, 205
Hpy166II GTNNAC 1 cut(s) 213
Hpy188I TCNGA 2 cut(s) 13, 110
Hpy188III TCNNGA 2 cut(s) 100, 173
Hpy8I GTNNAC 1 cut(s) 213
Hpy99I CGWCG 3 cut(s) 86, 89, 110
HpyAV CCTTC 2 cut(s) 8, 59
HpyCH4III ACNGT 1 cut(s) 154
HpyCH4V TGCA 2 cut(s) 24, 126
HpyF10VI GCNNNNNNNGC 2 cut(s) 138, 144
Hsp92II CATG 3 cut(s) 126, 200, 205
Kzo9I GATC 1 cut(s) 102
LmnI GCTCC 1 cut(s) 163
LpnPI CCDG 5 cut(s) 10, 85, 148, 152, 158
Lsp1109I GCAGC 1 cut(s) 125
LweI GCATC 2 cut(s) 99, 135
MaeIII GTNAC 1 cut(s) 148
MalI GATC 1 cut(s) 104
MboI GATC 1 cut(s) 102
MluCI AATT 1 cut(s) 192
MmeI TCCRAC 1 cut(s) 88
MnlI CCTC 4 cut(s) 80, 83, 86, 226
Mph1103I ATGCAT 1 cut(s) 128
MseI TTAA 1 cut(s) 232
MwoI GCNNNNNNNGC 2 cut(s) 138, 144
NdeII GATC 1 cut(s) 102
NlaIII CATG 3 cut(s) 126, 200, 205
NlaIV GGNNCC 1 cut(s) 189
NmeAIII GCCGAG 1 cut(s) 24
NmuCI GTSAC 1 cut(s) 148
NsiI ATGCAT 1 cut(s) 128
NspI RCATGY 1 cut(s) 126
PceI AGGCCT 1 cut(s) 28
PcsI WCGNNNNNNNCGW 1 cut(s) 90
PkrI GCNGC 1 cut(s) 140
PspN4I GGNNCC 1 cut(s) 189
PspPI GGNCC 1 cut(s) 187
SaqAI TTAA 1 cut(s) 232
SatI GCNGC 1 cut(s) 139
Sau3AI GATC 1 cut(s) 102
Sau96I GGNCC 1 cut(s) 187
SetI ASST 2 cut(s) 168, 218
SfaNI GCATC 2 cut(s) 99, 135
Sse9I AATT 1 cut(s) 192
SseBI AGGCCT 1 cut(s) 28
StuI AGGCCT 1 cut(s) 28
TaaI ACNGT 1 cut(s) 154
TasI AATT 1 cut(s) 192
Tru1I TTAA 1 cut(s) 232
Tru9I TTAA 1 cut(s) 232
TseFI GTSAC 1 cut(s) 148
TseI GCWGC 1 cut(s) 138
Tsp45I GTSAC 1 cut(s) 148
TspDTI ATGAA 1 cut(s) 185
TspGWI ACGGA 1 cut(s) 70
XceI RCATGY 1 cut(s) 126
Zsp2I ATGCAT 1 cut(s) 128
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.