MD17G1233200.v1.1

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr17
OG0014990
Physical Location & Seq
Reverse (-)
28146890 .. 28147971
1082 bp
Loading structure...
UTR
Exon/CDS
Intron
MD17G1233200.v1.1.491

Sequence Viewer

Length: 234 bp
ATGTGCTCTTCAGAGGGTGATTGCAGGCCTTTGGGCTTTCTACTGGGCCTTCCGTTCGCTCTTCTCTCCCTCCTCCTCTCCATCGTCGGCATCGTCATCTGGATCGTCGGATTGTTGCTGACGTGCATATGCCCGTGCTGTTTGTGCGTGACGGTGATGGTGGAGCTGGCCCTGGAGTTGGTGAAAGCTCCAATTCATGTGATGGAATGGTTCACTTCTCAAATCCCCTGTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

78

Amino Acids

8.35

Weight (kDa)

4.57

Isoelectric Point (pI)

20.63

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0014990)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G31090
fragaria_vesca FvH4_6g27090
malus_domestica MD09G1240200.v1.1 MD17G1233200.v1.1
prunus_persica Prupe.3G124200_v2.0.a1 Prupe.8G118600_v2.0.a1 Prupe.8G118700_v2.0.a1
pyrus_communis pycom09g15880 pycom17g23610
rosa_chinensis RchiOBHm_Chr2g0128431
rosa_multiflora Rmu_co8518749.1_g000001
rosa_roxburghii Rroxscaffold_2G00114930
rosa_samantha Rh2AG336200 Rh2CG323100 Rh2DG360800
rosa_wichuraiana Rw2G027260

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AclWI GGATC 1 cut(s) 110
AfiI CCNNNNNNNGG 1 cut(s) 178
AjiI CACGTC 1 cut(s) 123
AjnI CCWGG 1 cut(s) 171
AluBI AGCT 2 cut(s) 166, 188
AluI AGCT 2 cut(s) 166, 188
Alw21I GWGCWC 1 cut(s) 8
AlwI GGATC 1 cut(s) 110
AoxI GGCC 3 cut(s) 26, 46, 168
AspS9I GGNCC 2 cut(s) 46, 169
AsuHPI GGTGA 3 cut(s) 29, 166, 193
Bbv12I GWGCWC 1 cut(s) 8
BccI CCATC 3 cut(s) 89, 151, 196
BciT130I CCWGG 1 cut(s) 173
Bme1390I CCNGG 1 cut(s) 173
BmgBI CACGTC 1 cut(s) 123
BmgT120I GGNCC 2 cut(s) 46, 169
BmrFI CCNGG 1 cut(s) 173
BmrI ACTGGG 1 cut(s) 53
BmsI GCATC 1 cut(s) 99
BmuI ACTGGG 1 cut(s) 53
BpmI CTGGAG 1 cut(s) 194
BsaJI CCNNGG 1 cut(s) 171
Bsc4I CCNNNNNNNGG 1 cut(s) 178
Bse1I ACTGG 1 cut(s) 48
BseBI CCWGG 1 cut(s) 173
BseDI CCNNGG 1 cut(s) 171
BseLI CCNNNNNNNGG 1 cut(s) 178
BseNI ACTGG 1 cut(s) 48
BseRI GAGGAG 2 cut(s) 62, 65
BshFI GGCC 3 cut(s) 28, 48, 170
BsiHKAI GWGCWC 1 cut(s) 8
BslI CCNNNNNNNGG 1 cut(s) 178
BsnI GGCC 3 cut(s) 28, 48, 170
Bsp1286I GDGCHC 1 cut(s) 8
Bsp143I GATC 1 cut(s) 102
BspANI GGCC 3 cut(s) 28, 48, 170
BspPI GGATC 1 cut(s) 110
BspQI GCTCTTC 2 cut(s) 13, 66
BsrI ACTGG 1 cut(s) 48
BssECI CCNNGG 1 cut(s) 171
BssMI GATC 1 cut(s) 102
Bst2UI CCWGG 1 cut(s) 173
Bst4CI ACNGT 1 cut(s) 154
Bst6I CTCTTC 2 cut(s) 13, 66
BstC8I GCNNGC 2 cut(s) 26, 168
BstKTI GATC 1 cut(s) 105
BstMBI GATC 1 cut(s) 102
BstMWI GCNNNNNNNGC 1 cut(s) 144
BstNI CCWGG 1 cut(s) 173
BstSCI CCNGG 1 cut(s) 171
BsuRI GGCC 3 cut(s) 28, 48, 170
BtrI CACGTC 1 cut(s) 123
Cac8I GCNNGC 2 cut(s) 26, 168
Cfr13I GGNCC 2 cut(s) 46, 169
CviAII CATG 1 cut(s) 197
CviJI RGCY 6 cut(s) 28, 36, 48, 166, 170, 188
CviKI_1 RGCY 6 cut(s) 28, 36, 48, 166, 170, 188
DpnI GATC 1 cut(s) 104
DpnII GATC 1 cut(s) 102
Eam1104I CTCTTC 2 cut(s) 13, 66
EarI CTCTTC 2 cut(s) 13, 66
Eco147I AGGCCT 1 cut(s) 28
EcoRII CCWGG 1 cut(s) 171
FaeI CATG 1 cut(s) 200
FaiI YATR 3 cut(s) 128, 130, 198
FatI CATG 1 cut(s) 196
FauNDI CATATG 1 cut(s) 128
GsuI CTGGAG 1 cut(s) 194
HaeIII GGCC 3 cut(s) 28, 48, 170
Hin1II CATG 1 cut(s) 200
HphI GGTGA 3 cut(s) 29, 166, 193
Hpy166II GTNNAC 1 cut(s) 213
Hpy188I TCNGA 2 cut(s) 13, 110
Hpy188III TCNNGA 1 cut(s) 100
Hpy8I GTNNAC 1 cut(s) 213
Hpy99I CGWCG 2 cut(s) 89, 110
HpyAV CCTTC 1 cut(s) 59
HpyCH4III ACNGT 1 cut(s) 154
HpyCH4IV ACGT 1 cut(s) 122
HpyCH4V TGCA 2 cut(s) 24, 126
HpyF10VI GCNNNNNNNGC 1 cut(s) 144
HpySE526I ACGT 1 cut(s) 122
Hsp92II CATG 1 cut(s) 200
Kzo9I GATC 1 cut(s) 102
LguI GCTCTTC 2 cut(s) 13, 66
LmnI GCTCC 2 cut(s) 163, 193
LpnPI CCDG 6 cut(s) 10, 29, 85, 152, 158, 185
LweI GCATC 1 cut(s) 99
MaeII ACGT 1 cut(s) 122
MaeIII GTNAC 1 cut(s) 148
MalI GATC 1 cut(s) 104
MboI GATC 1 cut(s) 102
MboII GAAGA 1 cut(s) 53
MhlI GDGCHC 1 cut(s) 8
MluCI AATT 1 cut(s) 192
MmeI TCCRAC 1 cut(s) 88
MnlI CCTC 4 cut(s) 7, 80, 83, 86
MseI TTAA 1 cut(s) 232
MspR9I CCNGG 1 cut(s) 173
MvaI CCWGG 1 cut(s) 173
MwoI GCNNNNNNNGC 1 cut(s) 144
NdeI CATATG 1 cut(s) 128
NdeII GATC 1 cut(s) 102
NlaIII CATG 1 cut(s) 200
NmuCI GTSAC 1 cut(s) 148
PceI AGGCCT 1 cut(s) 28
PciSI GCTCTTC 2 cut(s) 13, 66
PcsI WCGNNNNNNNCGW 1 cut(s) 90
Psp6I CCWGG 1 cut(s) 171
PspGI CCWGG 1 cut(s) 171
PspPI GGNCC 2 cut(s) 46, 169
SapI GCTCTTC 2 cut(s) 13, 66
SaqAI TTAA 1 cut(s) 232
Sau3AI GATC 1 cut(s) 102
Sau96I GGNCC 2 cut(s) 46, 169
ScrFI CCNGG 1 cut(s) 173
SduI GDGCHC 1 cut(s) 8
SetI ASST 3 cut(s) 125, 168, 190
SfaNI GCATC 1 cut(s) 99
Sse9I AATT 1 cut(s) 192
SseBI AGGCCT 1 cut(s) 28
StuI AGGCCT 1 cut(s) 28
StyD4I CCNGG 1 cut(s) 171
TaaI ACNGT 1 cut(s) 154
TaiI ACGT 1 cut(s) 125
TasI AATT 1 cut(s) 192
Tru1I TTAA 1 cut(s) 232
Tru9I TTAA 1 cut(s) 232
TseFI GTSAC 1 cut(s) 148
Tsp45I GTSAC 1 cut(s) 148
TspDTI ATGAA 1 cut(s) 185
TspGWI ACGGA 1 cut(s) 42
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.