MD09G1240200.v1.1

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr09
OG0014990
Physical Location & Seq
Reverse (-)
30554626 .. 30555398
773 bp
Loading structure...
UTR
Exon/CDS
Intron
MD09G1240200.v1.1.491

Sequence Viewer

Length: 234 bp
ATGTGCTCTTCGGAGGGTGATTGCAGGCCTTTGGGCTTTCTACTGGGCCTTCCGTTCGCTCTCCTCTCCCTCCTTCTCTCCATTGTCGGCATCGTCATCTGGATCGTGGGATTGTTGCTGACGTGCATATGCCCGTGCTGTTTGTGCGTGACGGTGATCGTGGAGTTGGCTCTGCAGTTGGTCAAAGCCCCAATTCATGTCATGGAGTGGTTCACTTCTCAAATCCCCTGTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

78

Amino Acids

8.33

Weight (kDa)

4.83

Isoelectric Point (pI)

23.76

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0014990)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G31090
fragaria_vesca FvH4_6g27090
malus_domestica MD09G1240200.v1.1 MD17G1233200.v1.1
prunus_persica Prupe.3G124200_v2.0.a1 Prupe.8G118600_v2.0.a1 Prupe.8G118700_v2.0.a1
pyrus_communis pycom09g15880 pycom17g23610
rosa_chinensis RchiOBHm_Chr2g0128431
rosa_multiflora Rmu_co8518749.1_g000001
rosa_roxburghii Rroxscaffold_2G00114930
rosa_samantha Rh2AG336200 Rh2CG323100 Rh2DG360800
rosa_wichuraiana Rw2G027260

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AclWI GGATC 1 cut(s) 110
AjiI CACGTC 1 cut(s) 123
Alw21I GWGCWC 1 cut(s) 8
AlwI GGATC 1 cut(s) 110
AoxI GGCC 2 cut(s) 26, 46
AspS9I GGNCC 1 cut(s) 46
AsuHPI GGTGA 2 cut(s) 29, 166
Bbv12I GWGCWC 1 cut(s) 8
BfmI CTRYAG 1 cut(s) 173
BmgBI CACGTC 1 cut(s) 123
BmgT120I GGNCC 1 cut(s) 46
BmrI ACTGGG 1 cut(s) 53
BmsI GCATC 1 cut(s) 99
BmuI ACTGGG 1 cut(s) 53
Bse1I ACTGG 1 cut(s) 48
BseNI ACTGG 1 cut(s) 48
BseRI GAGGAG 1 cut(s) 53
BshFI GGCC 2 cut(s) 28, 48
BsiHKAI GWGCWC 1 cut(s) 8
BsnI GGCC 2 cut(s) 28, 48
Bsp1286I GDGCHC 1 cut(s) 8
Bsp143I GATC 2 cut(s) 102, 156
BspANI GGCC 2 cut(s) 28, 48
BspMAI CTGCAG 1 cut(s) 177
BspPI GGATC 1 cut(s) 110
BspQI GCTCTTC 1 cut(s) 13
BsrI ACTGG 1 cut(s) 48
BssMI GATC 2 cut(s) 102, 156
Bst4CI ACNGT 1 cut(s) 154
Bst6I CTCTTC 1 cut(s) 13
BstC8I GCNNGC 1 cut(s) 26
BstKTI GATC 2 cut(s) 105, 159
BstMBI GATC 2 cut(s) 102, 156
BstMWI GCNNNNNNNGC 1 cut(s) 144
BstSFI CTRYAG 1 cut(s) 173
BsuRI GGCC 2 cut(s) 28, 48
BtrI CACGTC 1 cut(s) 123
Cac8I GCNNGC 1 cut(s) 26
Cfr13I GGNCC 1 cut(s) 46
CviAII CATG 2 cut(s) 197, 202
CviJI RGCY 5 cut(s) 28, 36, 48, 170, 188
CviKI_1 RGCY 5 cut(s) 28, 36, 48, 170, 188
DpnI GATC 2 cut(s) 104, 158
DpnII GATC 2 cut(s) 102, 156
Eam1104I CTCTTC 1 cut(s) 13
EarI CTCTTC 1 cut(s) 13
Eco147I AGGCCT 1 cut(s) 28
FaeI CATG 2 cut(s) 200, 205
FaiI YATR 4 cut(s) 128, 130, 198, 203
FatI CATG 2 cut(s) 196, 201
FauNDI CATATG 1 cut(s) 128
HaeIII GGCC 2 cut(s) 28, 48
Hin1II CATG 2 cut(s) 200, 205
HphI GGTGA 2 cut(s) 29, 166
Hpy166II GTNNAC 1 cut(s) 213
Hpy188I TCNGA 1 cut(s) 13
Hpy188III TCNNGA 1 cut(s) 100
Hpy8I GTNNAC 1 cut(s) 213
HpyAV CCTTC 2 cut(s) 59, 83
HpyCH4III ACNGT 1 cut(s) 154
HpyCH4IV ACGT 1 cut(s) 122
HpyCH4V TGCA 3 cut(s) 24, 126, 175
HpyF10VI GCNNNNNNNGC 1 cut(s) 144
HpySE526I ACGT 1 cut(s) 122
Hsp92II CATG 2 cut(s) 200, 205
Kzo9I GATC 2 cut(s) 102, 156
LguI GCTCTTC 1 cut(s) 13
LpnPI CCDG 3 cut(s) 10, 29, 85
LweI GCATC 1 cut(s) 99
MaeII ACGT 1 cut(s) 122
MaeIII GTNAC 1 cut(s) 148
MalI GATC 2 cut(s) 104, 158
MboI GATC 2 cut(s) 102, 156
MhlI GDGCHC 1 cut(s) 8
MluCI AATT 1 cut(s) 192
MnlI CCTC 3 cut(s) 7, 74, 80
MseI TTAA 1 cut(s) 232
MwoI GCNNNNNNNGC 1 cut(s) 144
NdeI CATATG 1 cut(s) 128
NdeII GATC 2 cut(s) 102, 156
NlaIII CATG 2 cut(s) 200, 205
NmuCI GTSAC 1 cut(s) 148
PceI AGGCCT 1 cut(s) 28
PciSI GCTCTTC 1 cut(s) 13
PspPI GGNCC 1 cut(s) 46
PstI CTGCAG 1 cut(s) 177
SapI GCTCTTC 1 cut(s) 13
SaqAI TTAA 1 cut(s) 232
Sau3AI GATC 2 cut(s) 102, 156
Sau96I GGNCC 1 cut(s) 46
SduI GDGCHC 1 cut(s) 8
SetI ASST 1 cut(s) 125
SfaNI GCATC 1 cut(s) 99
SfcI CTRYAG 1 cut(s) 173
Sse9I AATT 1 cut(s) 192
SseBI AGGCCT 1 cut(s) 28
StuI AGGCCT 1 cut(s) 28
TaaI ACNGT 1 cut(s) 154
TaiI ACGT 1 cut(s) 125
TasI AATT 1 cut(s) 192
Tru1I TTAA 1 cut(s) 232
Tru9I TTAA 1 cut(s) 232
TseFI GTSAC 1 cut(s) 148
Tsp45I GTSAC 1 cut(s) 148
TspDTI ATGAA 1 cut(s) 185
TspGWI ACGGA 1 cut(s) 42
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.