4Fe-4S single cluster domain of Ferredoxin I
Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.
| Species | Orthologous Gene IDs |
|---|---|
| arabidopsis_thaliana | AT2G42750 |
| fragaria_vesca | FvH4_6g27700 |
| malus_domestica | MD17G1264200.v1.1 |
| prunus_persica | Prupe.3G113500_v2.0.a1 |
| pyrus_communis | pycom09g15350 |
| rosa_chinensis | RchiOBHm_Chr2g0130851 |
| rosa_laevigata | RLG00000019154 |
| rosa_multiflora | Rmu_co8506113.1_g000001 Rmu_sc0003629.1_g000017 |
| rosa_roxburghii | Rroxscaffold_2G00113490 |
| rosa_rugosa | Rorug02G0293700 |
| rosa_samantha | Rh2AG345000 Rh2BG353400 Rh2DG371300 |
| rosa_wichuraiana | Rw2G027460 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AatII | GACGTC | 1 cut(s) | 632 |
| Acc16I | TGCGCA | 1 cut(s) | 668 |
| Acc36I | ACCTGC | 1 cut(s) | 695 |
| AccBSI | CCGCTC | 1 cut(s) | 300 |
| AccI | GTMKAC | 1 cut(s) | 555 |
| AccII | CGCG | 1 cut(s) | 78 |
| AccIII | TCCGGA | 1 cut(s) | 310 |
| AciI | CCGC | 3 cut(s) | 300, 725, 915 |
| AclWI | GGATC | 2 cut(s) | 302, 459 |
| AcsI | RAATTY | 2 cut(s) | 322, 393 |
| AcuI | CTGAAG | 3 cut(s) | 51, 165, 861 |
| AcyI | GRCGYC | 1 cut(s) | 629 |
| AfaI | GTAC | 1 cut(s) | 941 |
| AgsI | TTSAA | 2 cut(s) | 587, 656 |
| AluBI | AGCT | 6 cut(s) | 35, 108, 477, 788, 911, 923 |
| AluI | AGCT | 6 cut(s) | 35, 108, 477, 788, 911, 923 |
| Alw21I | GWGCWC | 1 cut(s) | 71 |
| Alw26I | GTCTC | 1 cut(s) | 308 |
| AlwI | GGATC | 2 cut(s) | 302, 459 |
| Ama87I | CYCGRG | 1 cut(s) | 943 |
| Aor13HI | TCCGGA | 1 cut(s) | 310 |
| ApeKI | GCWGC | 8 cut(s) | 373, 486, 635, 719, 722, 911, 917, 920 |
| ApoI | RAATTY | 2 cut(s) | 322, 393 |
| AseI | ATTAAT | 1 cut(s) | 102 |
| AspLEI | GCGC | 4 cut(s) | 78, 191, 378, 669 |
| AspS9I | GGNCC | 1 cut(s) | 90 |
| AsuHPI | GGTGA | 1 cut(s) | 314 |
| AvaI | CYCGRG | 1 cut(s) | 943 |
| AvaII | GGWCC | 1 cut(s) | 90 |
| BanII | GRGCYC | 2 cut(s) | 176, 716 |
| BbsI | GAAGAC | 1 cut(s) | 540 |
| Bbv12I | GWGCWC | 1 cut(s) | 71 |
| BbvI | GCAGC | 8 cut(s) | 385, 473, 622, 731, 734, 898, 904, 932 |
| BccI | CCATC | 3 cut(s) | 112, 747, 924 |
| BceAI | ACGGC | 2 cut(s) | 429, 756 |
| BcoDI | GTCTC | 1 cut(s) | 308 |
| BfaI | CTAG | 1 cut(s) | 969 |
| BfmI | CTRYAG | 1 cut(s) | 918 |
| BfoI | RGCGCY | 1 cut(s) | 192 |
| BfuAI | ACCTGC | 1 cut(s) | 695 |
| BglI | GCCNNNNNGGC | 1 cut(s) | 506 |
| BisI | GCNGC | 9 cut(s) | 374, 487, 636, 720, 723, 912, 915, 918, 921 |
| BlpI | GCTNAGC | 1 cut(s) | 715 |
| BlsI | GCNGC | 9 cut(s) | 375, 488, 637, 721, 724, 913, 916, 919, 922 |
| BmcAI | AGTACT | 1 cut(s) | 941 |
| Bme18I | GGWCC | 1 cut(s) | 90 |
| BmeT110I | CYCGRG | 1 cut(s) | 943 |
| BmgT120I | GGNCC | 1 cut(s) | 90 |
| BmiI | GGNNCC | 1 cut(s) | 510 |
| BmrI | ACTGGG | 1 cut(s) | 847 |
| BmsI | GCATC | 3 cut(s) | 223, 627, 687 |
| BmuI | ACTGGG | 1 cut(s) | 847 |
| BpiI | GAAGAC | 1 cut(s) | 540 |
| BplI | GAGNNNNNCTC | 2 cut(s) | 977, 1009 |
| BpmI | CTGGAG | 1 cut(s) | 495 |
| Bpu1102I | GCTNAGC | 1 cut(s) | 715 |
| BpuEI | CTTGAG | 3 cut(s) | 23, 130, 316 |
| BsaHI | GRCGYC | 1 cut(s) | 629 |
| BsaWI | WCCGGW | 1 cut(s) | 310 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 194, 224 |
| Bse1I | ACTGG | 1 cut(s) | 842 |
| Bse3DI | GCAATG | 1 cut(s) | 647 |
| BseAI | TCCGGA | 1 cut(s) | 310 |
| BseGI | GGATG | 4 cut(s) | 286, 618, 733, 804 |
| BseMI | GCAATG | 1 cut(s) | 647 |
| BseMII | CTCAG | 4 cut(s) | 20, 159, 373, 729 |
| BseNI | ACTGG | 1 cut(s) | 842 |
| BseRI | GAGGAG | 1 cut(s) | 896 |
| BseXI | GCAGC | 8 cut(s) | 385, 473, 622, 731, 734, 898, 904, 932 |
| BseYI | CCCAGC | 1 cut(s) | 128 |
| BsgI | GTGCAG | 2 cut(s) | 392, 621 |
| Bsh1236I | CGCG | 1 cut(s) | 78 |
| BsiHKAI | GWGCWC | 1 cut(s) | 71 |
| BsiHKCI | CYCGRG | 1 cut(s) | 943 |
| BsiSI | CCGG | 1 cut(s) | 311 |
| BslFI | GGGAC | 1 cut(s) | 854 |
| BsmAI | GTCTC | 1 cut(s) | 308 |
| BsmFI | GGGAC | 1 cut(s) | 854 |
| BsoBI | CYCGRG | 1 cut(s) | 943 |
| Bsp1286I | GDGCHC | 3 cut(s) | 71, 176, 716 |
| Bsp13I | TCCGGA | 1 cut(s) | 310 |
| Bsp143I | GATC | 4 cut(s) | 249, 307, 417, 451 |
| Bsp1720I | GCTNAGC | 1 cut(s) | 715 |
| BspACI | CCGC | 3 cut(s) | 300, 725, 915 |
| BspCNI | CTCAG | 4 cut(s) | 19, 160, 372, 728 |
| BspEI | TCCGGA | 1 cut(s) | 310 |
| BspFNI | CGCG | 1 cut(s) | 78 |
| BspLI | GGNNCC | 1 cut(s) | 510 |
| BspMAI | CTGCAG | 1 cut(s) | 922 |
| BspMI | ACCTGC | 1 cut(s) | 695 |
| BspPI | GGATC | 2 cut(s) | 302, 459 |
| BspQI | GCTCTTC | 2 cut(s) | 133, 538 |
| BsrBI | CCGCTC | 1 cut(s) | 300 |
| BsrDI | GCAATG | 1 cut(s) | 647 |
| BsrI | ACTGG | 1 cut(s) | 842 |
| BssMI | GATC | 4 cut(s) | 249, 307, 417, 451 |
| BssNAI | GTATAC | 1 cut(s) | 556 |
| BssNI | GRCGYC | 1 cut(s) | 629 |
| Bst1107I | GTATAC | 1 cut(s) | 556 |
| Bst4CI | ACNGT | 3 cut(s) | 497, 560, 645 |
| Bst6I | CTCTTC | 2 cut(s) | 133, 538 |
| BstACI | GRCGYC | 1 cut(s) | 629 |
| BstC8I | GCNNGC | 2 cut(s) | 702, 768 |
| BstDEI | CTNAG | 4 cut(s) | 6, 168, 359, 715 |
| BstF5I | GGATG | 4 cut(s) | 286, 618, 733, 804 |
| BstFNI | CGCG | 1 cut(s) | 78 |
| BstH2I | RGCGCY | 1 cut(s) | 192 |
| BstHHI | GCGC | 4 cut(s) | 78, 191, 378, 669 |
| BstKTI | GATC | 4 cut(s) | 252, 310, 420, 454 |
| BstMAI | GTCTC | 1 cut(s) | 308 |
| BstMBI | GATC | 4 cut(s) | 249, 307, 417, 451 |
| BstMWI | GCNNNNNNNGC | 9 cut(s) | 75, 242, 413, 483, 506, 763, 908, 917, 920 |
| BstSFI | CTRYAG | 1 cut(s) | 918 |
| BstUI | CGCG | 1 cut(s) | 78 |
| BstV1I | GCAGC | 8 cut(s) | 385, 473, 622, 731, 734, 898, 904, 932 |
| BstV2I | GAAGAC | 1 cut(s) | 540 |
| BstX2I | RGATCY | 1 cut(s) | 307 |
| BstYI | RGATCY | 1 cut(s) | 307 |
| BstZ17I | GTATAC | 1 cut(s) | 556 |
| BtsCI | GGATG | 4 cut(s) | 286, 618, 733, 804 |
| BtsI | GCAGTG | 1 cut(s) | 438 |
| BtsIMutI | CAGTG | 5 cut(s) | 27, 367, 438, 569, 692 |
| BveI | ACCTGC | 1 cut(s) | 695 |
| Cac8I | GCNNGC | 2 cut(s) | 702, 768 |
| CfoI | GCGC | 4 cut(s) | 78, 191, 378, 669 |
| Cfr13I | GGNCC | 1 cut(s) | 90 |
| Csp6I | GTAC | 1 cut(s) | 940 |
| CviAII | CATG | 5 cut(s) | 72, 125, 274, 379, 398 |
| CviQI | GTAC | 1 cut(s) | 940 |
| DdeI | CTNAG | 4 cut(s) | 6, 168, 359, 715 |
| DpnI | GATC | 4 cut(s) | 251, 309, 419, 453 |
| DpnII | GATC | 4 cut(s) | 249, 307, 417, 451 |
| Eam1104I | CTCTTC | 2 cut(s) | 133, 538 |
| EarI | CTCTTC | 2 cut(s) | 133, 538 |
| Eco24I | GRGCYC | 2 cut(s) | 176, 716 |
| Eco47I | GGWCC | 1 cut(s) | 90 |
| Eco57I | CTGAAG | 3 cut(s) | 51, 165, 861 |
| Eco88I | CYCGRG | 1 cut(s) | 943 |
| EcoT22I | ATGCAT | 1 cut(s) | 409 |
| EcoT38I | GRGCYC | 2 cut(s) | 176, 716 |
| FaeI | CATG | 5 cut(s) | 75, 128, 277, 382, 401 |
| FaqI | GGGAC | 1 cut(s) | 854 |
| FatI | CATG | 5 cut(s) | 71, 124, 273, 378, 397 |
| FblI | GTMKAC | 1 cut(s) | 555 |
| Fnu4HI | GCNGC | 9 cut(s) | 374, 487, 636, 720, 723, 912, 915, 918, 921 |
| FokI | GGATG | 4 cut(s) | 273, 605, 740, 811 |
| FriOI | GRGCYC | 2 cut(s) | 176, 716 |
| Fsp4HI | GCNGC | 9 cut(s) | 374, 487, 636, 720, 723, 912, 915, 918, 921 |
| FspBI | CTAG | 1 cut(s) | 969 |
| FspI | TGCGCA | 1 cut(s) | 668 |
| GlaI | GCGC | 4 cut(s) | 77, 190, 377, 668 |
| GluI | GCNGC | 9 cut(s) | 374, 487, 636, 720, 723, 912, 915, 918, 921 |
| GsaI | CCCAGC | 1 cut(s) | 132 |
| GsuI | CTGGAG | 1 cut(s) | 495 |
| HaeII | RGCGCY | 1 cut(s) | 192 |
| HapII | CCGG | 1 cut(s) | 311 |
| HhaI | GCGC | 4 cut(s) | 78, 191, 378, 669 |
| Hin1I | GRCGYC | 1 cut(s) | 629 |
| Hin1II | CATG | 5 cut(s) | 75, 128, 277, 382, 401 |
| Hin6I | GCGC | 4 cut(s) | 76, 189, 376, 667 |
| HinP1I | GCGC | 4 cut(s) | 76, 189, 376, 667 |
| HincII | GTYRAC | 1 cut(s) | 466 |
| HindII | GTYRAC | 1 cut(s) | 466 |
| HinfI | GANTC | 4 cut(s) | 112, 153, 815, 830 |
| HpaII | CCGG | 1 cut(s) | 311 |
| HphI | GGTGA | 1 cut(s) | 314 |
| Hpy166II | GTNNAC | 2 cut(s) | 466, 556 |
| Hpy188I | TCNGA | 5 cut(s) | 117, 158, 737, 820, 880 |
| Hpy188III | TCNNGA | 9 cut(s) | 46, 230, 253, 290, 311, 512, 575, 750, 983 |
| Hpy8I | GTNNAC | 2 cut(s) | 466, 556 |
| HpyAV | CCTTC | 2 cut(s) | 271, 943 |
| HpyCH4III | ACNGT | 3 cut(s) | 497, 560, 645 |
| HpyCH4IV | ACGT | 1 cut(s) | 629 |
| HpyCH4V | TGCA | 9 cut(s) | 273, 373, 407, 489, 524, 618, 638, 692, 920 |
| HpyF10VI | GCNNNNNNNGC | 9 cut(s) | 75, 242, 413, 483, 506, 763, 908, 917, 920 |
| HpyF3I | CTNAG | 4 cut(s) | 6, 168, 359, 715 |
| HpySE526I | ACGT | 1 cut(s) | 629 |
| Hsp92I | GRCGYC | 1 cut(s) | 629 |
| Hsp92II | CATG | 5 cut(s) | 75, 128, 277, 382, 401 |
| HspAI | GCGC | 4 cut(s) | 76, 189, 376, 667 |
| Kpn2I | TCCGGA | 1 cut(s) | 310 |
| Kzo9I | GATC | 4 cut(s) | 249, 307, 417, 451 |
| LguI | GCTCTTC | 2 cut(s) | 133, 538 |
| LmnI | GCTCC | 2 cut(s) | 448, 514 |
| Lsp1109I | GCAGC | 8 cut(s) | 385, 473, 622, 731, 734, 898, 904, 932 |
| LweI | GCATC | 3 cut(s) | 223, 627, 687 |
| MaeI | CTAG | 1 cut(s) | 969 |
| MaeII | ACGT | 1 cut(s) | 629 |
| MaeIII | GTNAC | 1 cut(s) | 362 |
| MalI | GATC | 4 cut(s) | 251, 309, 419, 453 |
| MbiI | CCGCTC | 1 cut(s) | 300 |
| MboI | GATC | 4 cut(s) | 249, 307, 417, 451 |
| MboII | GAAGA | 6 cut(s) | 150, 317, 545, 555, 668, 939 |
| MfeI | CAATTG | 3 cut(s) | 268, 525, 594 |
| MflI | RGATCY | 1 cut(s) | 307 |
| MhlI | GDGCHC | 3 cut(s) | 71, 176, 716 |
| MluCI | AATT | 5 cut(s) | 268, 322, 393, 525, 594 |
| MlyI | GAGTC | 2 cut(s) | 121, 162 |
| Mph1103I | ATGCAT | 1 cut(s) | 409 |
| MroI | TCCGGA | 1 cut(s) | 310 |
| MseI | TTAA | 1 cut(s) | 102 |
| MslI | CAYNNNNRTG | 1 cut(s) | 402 |
| MspA1I | CMGCKG | 2 cut(s) | 725, 917 |
| MspI | CCGG | 1 cut(s) | 311 |
| MunI | CAATTG | 3 cut(s) | 268, 525, 594 |
| MvnI | CGCG | 1 cut(s) | 78 |
| MwoI | GCNNNNNNNGC | 9 cut(s) | 75, 242, 413, 483, 506, 763, 908, 917, 920 |
| NdeII | GATC | 4 cut(s) | 249, 307, 417, 451 |
| NlaIII | CATG | 5 cut(s) | 75, 128, 277, 382, 401 |
| NlaIV | GGNNCC | 1 cut(s) | 510 |
| NmuCI | GTSAC | 1 cut(s) | 362 |
| NsbI | TGCGCA | 1 cut(s) | 668 |
| NsiI | ATGCAT | 1 cut(s) | 409 |
| PaeR7I | CTCGAG | 1 cut(s) | 943 |
| PciSI | GCTCTTC | 2 cut(s) | 133, 538 |
| PfeI | GAWTC | 2 cut(s) | 815, 830 |
| PkrI | GCNGC | 9 cut(s) | 375, 488, 637, 721, 724, 913, 916, 919, 922 |
| PleI | GAGTC | 2 cut(s) | 120, 161 |
| PpsI | GAGTC | 2 cut(s) | 120, 161 |
| PshBI | ATTAAT | 1 cut(s) | 102 |
| PspFI | CCCAGC | 1 cut(s) | 128 |
| PspN4I | GGNNCC | 1 cut(s) | 510 |
| PspPI | GGNCC | 1 cut(s) | 90 |
| PspXI | VCTCGAGB | 1 cut(s) | 943 |
| PstI | CTGCAG | 1 cut(s) | 922 |
| PsuI | RGATCY | 1 cut(s) | 307 |
| RsaI | GTAC | 1 cut(s) | 941 |
| RsaNI | GTAC | 1 cut(s) | 940 |
| RseI | CAYNNNNRTG | 1 cut(s) | 402 |
| SapI | GCTCTTC | 2 cut(s) | 133, 538 |
| SaqAI | TTAA | 1 cut(s) | 102 |
| SatI | GCNGC | 9 cut(s) | 374, 487, 636, 720, 723, 912, 915, 918, 921 |
| Sau3AI | GATC | 4 cut(s) | 249, 307, 417, 451 |
| Sau96I | GGNCC | 1 cut(s) | 90 |
| ScaI | AGTACT | 1 cut(s) | 941 |
| SchI | GAGTC | 2 cut(s) | 121, 162 |
| SduI | GDGCHC | 3 cut(s) | 71, 176, 716 |
| SfaNI | GCATC | 3 cut(s) | 223, 627, 687 |
| SfcI | CTRYAG | 1 cut(s) | 918 |
| Sfr274I | CTCGAG | 1 cut(s) | 943 |
| SinI | GGWCC | 1 cut(s) | 90 |
| SlaI | CTCGAG | 1 cut(s) | 943 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 402 |
| SmlI | CTYRAG | 4 cut(s) | 38, 109, 295, 943 |
| SmoI | CTYRAG | 4 cut(s) | 38, 109, 295, 943 |
| Sse9I | AATT | 5 cut(s) | 268, 322, 393, 525, 594 |
| SsiI | CCGC | 3 cut(s) | 300, 725, 915 |
| SspMI | CTAG | 1 cut(s) | 969 |
| TaaI | ACNGT | 3 cut(s) | 497, 560, 645 |
| TaiI | ACGT | 1 cut(s) | 632 |
| TaqI | TCGA | 3 cut(s) | 751, 925, 944 |
| TasI | AATT | 5 cut(s) | 268, 322, 393, 525, 594 |
| TatI | WGTACW | 1 cut(s) | 939 |
| TauI | GCSGC | 1 cut(s) | 917 |
| TfiI | GAWTC | 2 cut(s) | 815, 830 |
| Tru1I | TTAA | 1 cut(s) | 102 |
| Tru9I | TTAA | 1 cut(s) | 102 |
| TscAI | CASTG | 5 cut(s) | 34, 367, 445, 569, 699 |
| TseFI | GTSAC | 1 cut(s) | 362 |
| TseI | GCWGC | 8 cut(s) | 373, 486, 635, 719, 722, 911, 917, 920 |
| Tsp45I | GTSAC | 1 cut(s) | 362 |
| TspDTI | ATGAA | 5 cut(s) | 290, 325, 386, 405, 675 |
| TspGWI | ACGGA | 2 cut(s) | 202, 842 |
| TspRI | CASTG | 5 cut(s) | 34, 367, 445, 569, 699 |
| VpaK11BI | GGWCC | 1 cut(s) | 90 |
| VspI | ATTAAT | 1 cut(s) | 102 |
| XapI | RAATTY | 2 cut(s) | 322, 393 |
| XcmI | CCANNNNNNNNNTGG | 1 cut(s) | 69 |
| XhoI | CTCGAG | 1 cut(s) | 943 |
| XmiI | GTMKAC | 1 cut(s) | 555 |
| XspI | CTAG | 1 cut(s) | 969 |
| ZraI | GACGTC | 1 cut(s) | 630 |
| ZrmI | AGTACT | 1 cut(s) | 941 |
| Zsp2I | ATGCAT | 1 cut(s) | 409 |