pycom09g15350

4Fe-4S single cluster domain of Ferredoxin I

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr9
OG0016076
Physical Location & Seq
Reverse (-)
15200677 .. 15204307
3631 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom09g15350.5

Sequence Viewer

Length: 891 bp
ATGGGTGGCGGGAGGAGGCGAAGAGGCTTGGGCAGGCTCAGAGTGGCAACCGACGGCTCACCTTCAACAGACGCCGTCGCTGATGATTACTACTCCGTCTTGGGATTGCTTCCAGATGCGACGCCAGCACAAATTAAAAAGGCGTATTATAATTGTATGAAAGCTTGCCATCCGGACTTGAGTGGTGATAATCCAAACACTACCAATTTCTGCATCTTCATCAATGAGGTCTATGAGGTGCTCAGTGACCCTCTGCAACGCATGGTTTACGATGAAATTCACGGCTATGCTTTGACAGCAATCAATCCCTTCCTGGACGACTCTGCATTAAGGGATCATGCATTTGTCGATGAGTTTAGCTGCATAGGCTGCAAAAACTGTGCCAGTGTTGCTCCGGATGTCTTTGGTATCGAGGAAGACTTTGGAAGAGCCCGAGTGTACAGTCAGTGTGGGAACGTAGATTTAGTTCAACAGGCAATTGATAGTTGCCCTGTTGATTGCATCCATTGGACTTCTGCTGCACAACTATCATTGCTCGAAGATGAGATGCGCAGAGTAGAAAGAGTAAATGTTGCACTGATGCTTGCAGGTATGGGCTCATCAGTGGATGTTTTCAGAATGGCAAGTTCTCGGTGGCAAAAGAGGCAGTCACAAGTCTTGGAACAAGCTAAAATTAGGATGATGAAGAAGAAGGATACGGATAAAACAGAATCATACTGGGACAACATTTGGGCTAACCCCAAAGAGTACCAAAATTCAGAGGAGGAAGTGAGAGAAAGAGCAAGGAGAGCAGCAGCAGCTGCTCGAAGATGGAGGGAGTACTCAAGGAGGGGTGCTGATAAGCCTCCGAGCTATAAACTTCCGGAGGCCATCTCCAACAACGAAAACTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000002 GO:0000122 GO:0001775 GO:0001776 GO:0001932 GO:0001933 GO:0001941 GO:0001959 GO:0001960 GO:0002260 GO:0002376 GO:0002520 GO:0002521 GO:0002682 GO:0002683 GO:0002684 GO:0002694 GO:0002696 GO:0003674 GO:0005102 GO:0005126 GO:0005133 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005739 GO:0005759 GO:0005829 GO:0005886 GO:0006139 GO:0006259 GO:0006260 GO:0006261 GO:0006264 GO:0006355 GO:0006357 GO:0006457 GO:0006469 GO:0006725 GO:0006807 GO:0006915 GO:0006919 GO:0006924 GO:0006950 GO:0006952 GO:0006955 GO:0006996 GO:0007005 GO:0007154 GO:0007165 GO:0007264 GO:0007275 GO:0007528 GO:0007568 GO:0007569 GO:0008104 GO:0008134 GO:0008150 GO:0008152 GO:0008219 GO:0008284 GO:0008285 GO:0009058 GO:0009059 GO:0009295 GO:0009889 GO:0009890 GO:0009892 GO:0009893 GO:0009966 GO:0009968 GO:0009987 GO:0010033 GO:0010466 GO:0010468 GO:0010556 GO:0010558 GO:0010563 GO:0010604 GO:0010605 GO:0010629 GO:0010646 GO:0010648 GO:0010941 GO:0010942 GO:0010950 GO:0010951 GO:0010952 GO:0012501 GO:0016020 GO:0016043 GO:0019219 GO:0019220 GO:0019222 GO:0019897 GO:0019898 GO:0019899 GO:0019900 GO:0019901 GO:0022407 GO:0022409 GO:0023051 GO:0023052 GO:0023057 GO:0030097 GO:0030098 GO:0030154 GO:0030155 GO:0030162 GO:0030217 GO:0030234 GO:0030544 GO:0030695 GO:0030971 GO:0031072 GO:0031323 GO:0031324 GO:0031325 GO:0031326 GO:0031327 GO:0031347 GO:0031348 GO:0031396 GO:0031398 GO:0031399 GO:0031400 GO:0031401 GO:0031594 GO:0031647 GO:0031974 GO:0032042 GO:0032088 GO:0032268 GO:0032269 GO:0032270 GO:0032501 GO:0032502 GO:0032944 GO:0032946 GO:0033036 GO:0033077 GO:0033673 GO:0034097 GO:0034341 GO:0034613 GO:0034641 GO:0034645 GO:0035556 GO:0042102 GO:0042110 GO:0042127 GO:0042129 GO:0042221 GO:0042325 GO:0042326 GO:0042592 GO:0042645 GO:0042981 GO:0043029 GO:0043065 GO:0043066 GO:0043067 GO:0043068 GO:0043069 GO:0043085 GO:0043086 GO:0043113 GO:0043122 GO:0043124 GO:0043154 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043280 GO:0043281 GO:0043433 GO:0043549 GO:0044092 GO:0044093 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044422 GO:0044424 GO:0044425 GO:0044429 GO:0044444 GO:0044446 GO:0044456 GO:0044459 GO:0044464 GO:0045087 GO:0045088 GO:0045202 GO:0045211 GO:0045321 GO:0045785 GO:0045824 GO:0045859 GO:0045861 GO:0045862 GO:0045892 GO:0045934 GO:0045936 GO:0046483 GO:0046649 GO:0048513 GO:0048518 GO:0048519 GO:0048522 GO:0048523 GO:0048534 GO:0048583 GO:0048585 GO:0048731 GO:0048856 GO:0048869 GO:0048872 GO:0050670 GO:0050671 GO:0050776 GO:0050777 GO:0050789 GO:0050790 GO:0050794 GO:0050808 GO:0050821 GO:0050863 GO:0050865 GO:0050867 GO:0050870 GO:0050896 GO:0051059 GO:0051082 GO:0051090 GO:0051171 GO:0051172 GO:0051173 GO:0051174 GO:0051179 GO:0051246 GO:0051247 GO:0051248 GO:0051249 GO:0051251 GO:0051252 GO:0051253 GO:0051336 GO:0051338 GO:0051345 GO:0051346 GO:0051348 GO:0051641 GO:0051668 GO:0051716 GO:0052547 GO:0052548 GO:0060255 GO:0060330 GO:0060331 GO:0060334 GO:0060336 GO:0060548 GO:0060589 GO:0060759 GO:0060761 GO:0061024 GO:0065007 GO:0065008 GO:0065009 GO:0070013 GO:0070227 GO:0070231 GO:0070663 GO:0070665 GO:0070727 GO:0071340 GO:0071704 GO:0071840 GO:0071887 GO:0071944 GO:0072657 GO:0080090 GO:0080134 GO:0090304 GO:0097060 GO:0098590 GO:0098772 GO:0098794 GO:0099173 GO:1901360 GO:1901576 GO:1902531 GO:1902532 GO:1902679 GO:1903037 GO:1903039 GO:1903320 GO:1903322 GO:1903506 GO:1903507 GO:1990782 GO:2000112 GO:2000113 GO:2000116 GO:2000117 GO:2001056 GO:2001141
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DnaJ Fer4_13

Protein Analysis

297

Amino Acids

33.43

Weight (kDa)

5.72

Isoelectric Point (pI)

55.57

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0016076)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G42750
fragaria_vesca FvH4_6g27700
malus_domestica MD17G1264200.v1.1
prunus_persica Prupe.3G113500_v2.0.a1
pyrus_communis pycom09g15350
rosa_chinensis RchiOBHm_Chr2g0130851
rosa_laevigata RLG00000019154
rosa_multiflora Rmu_co8506113.1_g000001 Rmu_sc0003629.1_g000017
rosa_roxburghii Rroxscaffold_2G00113490
rosa_rugosa Rorug02G0293700
rosa_samantha Rh2AG345000 Rh2BG353400 Rh2DG371300
rosa_wichuraiana Rw2G027460

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 150
Acc16I TGCGCA 1 cut(s) 551
Acc36I ACCTGC 1 cut(s) 578
AccIII TCCGGA 3 cut(s) 172, 394, 862
AciI CCGC 1 cut(s) 9
AclWI GGATC 1 cut(s) 342
AcsI RAATTY 2 cut(s) 276, 754
AcyI GRCGYC 2 cut(s) 72, 122
AfaI GTAC 3 cut(s) 440, 749, 821
AgsI TTSAA 2 cut(s) 66, 470
AjnI CCWGG 1 cut(s) 312
AluBI AGCT 5 cut(s) 164, 360, 668, 800, 852
AluI AGCT 5 cut(s) 164, 360, 668, 800, 852
Alw21I GWGCWC 1 cut(s) 243
AlwI GGATC 1 cut(s) 342
AlwNI CAGNNNCTG 1 cut(s) 800
Ama87I CYCGRG 1 cut(s) 432
Aor13HI TCCGGA 3 cut(s) 172, 394, 862
AoxI GGCC 1 cut(s) 867
ApeKI GCWGC 7 cut(s) 360, 369, 518, 791, 794, 797, 800
ApoI RAATTY 2 cut(s) 276, 754
AspLEI GCGC 1 cut(s) 552
AsuHPI GGTGA 2 cut(s) 51, 197
AvaI CYCGRG 1 cut(s) 432
BanII GRGCYC 2 cut(s) 433, 599
BbsI GAAGAC 1 cut(s) 423
Bbv12I GWGCWC 1 cut(s) 243
BbvI GCAGC 7 cut(s) 347, 356, 505, 787, 803, 806, 809
BccI CCATC 3 cut(s) 177, 804, 878
BceAI ACGGC 3 cut(s) 59, 70, 298
BciT130I CCWGG 1 cut(s) 314
BciVI GTATCC 1 cut(s) 688
BfuAI ACCTGC 1 cut(s) 578
BfuI GTATCC 1 cut(s) 688
BisI GCNGC 7 cut(s) 361, 370, 519, 792, 795, 798, 801
BlsI GCNGC 7 cut(s) 362, 371, 520, 793, 796, 799, 802
BmcAI AGTACT 1 cut(s) 821
Bme1390I CCNGG 1 cut(s) 314
BmeT110I CYCGRG 1 cut(s) 432
BmrFI CCNGG 1 cut(s) 314
BmrI ACTGGG 1 cut(s) 727
BmsI GCATC 5 cut(s) 106, 222, 510, 537, 570
BmuI ACTGGG 1 cut(s) 727
BpiI GAAGAC 1 cut(s) 423
BplI GAGNNNNNCTC 2 cut(s) 857, 889
BpuEI CTTGAG 2 cut(s) 199, 808
BsaHI GRCGYC 2 cut(s) 72, 122
BsaWI WCCGGW 3 cut(s) 172, 394, 862
Bse1I ACTGG 2 cut(s) 384, 722
Bse3DI GCAATG 1 cut(s) 530
BseAI TCCGGA 3 cut(s) 172, 394, 862
BseBI CCWGG 1 cut(s) 314
BseGI GGATG 5 cut(s) 169, 403, 501, 613, 684
BseMI GCAATG 1 cut(s) 530
BseMII CTCAG 2 cut(s) 52, 256
BseNI ACTGG 2 cut(s) 384, 722
BseRI GAGGAG 2 cut(s) 28, 776
BseXI GCAGC 7 cut(s) 347, 356, 505, 787, 803, 806, 809
BsgI GTGCAG 1 cut(s) 504
BshFI GGCC 1 cut(s) 869
BsiHKAI GWGCWC 1 cut(s) 243
BsiHKCI CYCGRG 1 cut(s) 432
BsiSI CCGG 3 cut(s) 173, 395, 863
BslFI GGGAC 1 cut(s) 734
BsmFI GGGAC 1 cut(s) 734
BsnI GGCC 1 cut(s) 869
BsoBI CYCGRG 1 cut(s) 432
Bsp1286I GDGCHC 3 cut(s) 243, 433, 599
Bsp13I TCCGGA 3 cut(s) 172, 394, 862
Bsp1407I TGTACA 1 cut(s) 438
Bsp143I GATC 1 cut(s) 334
BspACI CCGC 1 cut(s) 9
BspANI GGCC 1 cut(s) 869
BspCNI CTCAG 2 cut(s) 51, 255
BspEI TCCGGA 3 cut(s) 172, 394, 862
BspMI ACCTGC 1 cut(s) 578
BspPI GGATC 1 cut(s) 342
BspQI GCTCTTC 1 cut(s) 421
BsrDI GCAATG 1 cut(s) 530
BsrGI TGTACA 1 cut(s) 438
BsrI ACTGG 2 cut(s) 384, 722
BssMI GATC 1 cut(s) 334
BssNI GRCGYC 2 cut(s) 72, 122
Bst2UI CCWGG 1 cut(s) 314
Bst4CI ACNGT 2 cut(s) 380, 443
Bst6I CTCTTC 2 cut(s) 16, 421
BstACI GRCGYC 2 cut(s) 72, 122
BstAPI GCANNNNNTGC 2 cut(s) 369, 800
BstAUI TGTACA 1 cut(s) 438
BstC8I GCNNGC 4 cut(s) 35, 126, 166, 585
BstDEI CTNAG 2 cut(s) 38, 242
BstF5I GGATG 5 cut(s) 169, 403, 501, 613, 684
BstHHI GCGC 1 cut(s) 552
BstKTI GATC 1 cut(s) 337
BstMBI GATC 1 cut(s) 334
BstMWI GCNNNNNNNGC 9 cut(s) 125, 296, 366, 369, 389, 643, 788, 797, 800
BstNI CCWGG 1 cut(s) 314
BstSCI CCNGG 1 cut(s) 312
BstV1I GCAGC 7 cut(s) 347, 356, 505, 787, 803, 806, 809
BstV2I GAAGAC 1 cut(s) 423
BsuI GTATCC 1 cut(s) 688
BsuRI GGCC 1 cut(s) 869
BtsCI GGATG 5 cut(s) 169, 403, 501, 613, 684
BtsIMutI CAGTG 5 cut(s) 250, 391, 452, 575, 609
BveI ACCTGC 1 cut(s) 578
Cac8I GCNNGC 4 cut(s) 35, 126, 166, 585
CaiI CAGNNNCTG 1 cut(s) 800
CfoI GCGC 1 cut(s) 552
CseI GACGC 2 cut(s) 80, 130
Csp6I GTAC 3 cut(s) 439, 748, 820
CviAII CATG 2 cut(s) 262, 338
CviQI GTAC 3 cut(s) 439, 748, 820
DdeI CTNAG 2 cut(s) 38, 242
DpnI GATC 1 cut(s) 336
DpnII GATC 1 cut(s) 334
Eam1104I CTCTTC 2 cut(s) 16, 421
EarI CTCTTC 2 cut(s) 16, 421
Eco24I GRGCYC 2 cut(s) 433, 599
Eco88I CYCGRG 1 cut(s) 432
EcoRII CCWGG 1 cut(s) 312
EcoT22I ATGCAT 1 cut(s) 343
EcoT38I GRGCYC 2 cut(s) 433, 599
FaeI CATG 2 cut(s) 265, 341
FaqI GGGAC 1 cut(s) 734
FatI CATG 2 cut(s) 261, 337
FauI CCCGC 1 cut(s) 2
Fnu4HI GCNGC 7 cut(s) 361, 370, 519, 792, 795, 798, 801
FokI GGATG 5 cut(s) 156, 410, 488, 620, 691
FriOI GRGCYC 2 cut(s) 433, 599
Fsp4HI GCNGC 7 cut(s) 361, 370, 519, 792, 795, 798, 801
FspI TGCGCA 1 cut(s) 551
GlaI GCGC 1 cut(s) 551
GluI GCNGC 7 cut(s) 361, 370, 519, 792, 795, 798, 801
HaeIII GGCC 1 cut(s) 869
HapII CCGG 3 cut(s) 173, 395, 863
HgaI GACGC 2 cut(s) 80, 130
HhaI GCGC 1 cut(s) 552
Hin1I GRCGYC 2 cut(s) 72, 122
Hin1II CATG 2 cut(s) 265, 341
Hin6I GCGC 1 cut(s) 550
HinP1I GCGC 1 cut(s) 550
HindIII AAGCTT 1 cut(s) 162
HinfI GANTC 2 cut(s) 320, 710
HpaII CCGG 3 cut(s) 173, 395, 863
HphI GGTGA 2 cut(s) 51, 197
Hpy166II GTNNAC 2 cut(s) 268, 439
Hpy188I TCNGA 4 cut(s) 41, 617, 760, 849
Hpy188III TCNNGA 4 cut(s) 113, 173, 395, 863
Hpy8I GTNNAC 2 cut(s) 268, 439
Hpy99I CGWCG 3 cut(s) 56, 80, 124
HpyAV CCTTC 3 cut(s) 72, 319, 685
HpyCH4III ACNGT 2 cut(s) 380, 443
HpyCH4IV ACGT 1 cut(s) 456
HpyF10VI GCNNNNNNNGC 9 cut(s) 125, 296, 366, 369, 389, 643, 788, 797, 800
HpyF3I CTNAG 2 cut(s) 38, 242
HpySE526I ACGT 1 cut(s) 456
Hsp92I GRCGYC 2 cut(s) 72, 122
Hsp92II CATG 2 cut(s) 265, 341
HspAI GCGC 1 cut(s) 550
Kpn2I TCCGGA 3 cut(s) 172, 394, 862
Kzo9I GATC 1 cut(s) 334
LguI GCTCTTC 1 cut(s) 421
LmnI GCTCC 1 cut(s) 397
Lsp1109I GCAGC 7 cut(s) 347, 356, 505, 787, 803, 806, 809
LweI GCATC 5 cut(s) 106, 222, 510, 537, 570
MaeII ACGT 1 cut(s) 456
MaeIII GTNAC 2 cut(s) 245, 648
MalI GATC 1 cut(s) 336
MboI GATC 1 cut(s) 334
MboII GAAGA 8 cut(s) 33, 208, 428, 438, 551, 697, 700, 819
MfeI CAATTG 1 cut(s) 477
MhlI GDGCHC 3 cut(s) 243, 433, 599
MluCI AATT 7 cut(s) 132, 151, 205, 276, 477, 672, 754
MlyI GAGTC 1 cut(s) 314
Mph1103I ATGCAT 1 cut(s) 343
MroI TCCGGA 3 cut(s) 172, 394, 862
MseI TTAA 2 cut(s) 135, 329
MslI CAYNNNNRTG 1 cut(s) 285
MspA1I CMGCKG 1 cut(s) 800
MspI CCGG 3 cut(s) 173, 395, 863
MspR9I CCNGG 1 cut(s) 314
MunI CAATTG 1 cut(s) 477
MvaI CCWGG 1 cut(s) 314
MwoI GCNNNNNNNGC 9 cut(s) 125, 296, 366, 369, 389, 643, 788, 797, 800
NdeII GATC 1 cut(s) 334
NlaIII CATG 2 cut(s) 265, 341
NmuCI GTSAC 2 cut(s) 245, 648
NsbI TGCGCA 1 cut(s) 551
NsiI ATGCAT 1 cut(s) 343
PciSI GCTCTTC 1 cut(s) 421
PfeI GAWTC 1 cut(s) 710
PflFI GACNNNGTC 1 cut(s) 74
PfoI TCCNGGA 1 cut(s) 312
PkrI GCNGC 7 cut(s) 362, 371, 520, 793, 796, 799, 802
PleI GAGTC 1 cut(s) 314
PpsI GAGTC 1 cut(s) 314
PsiI TTATAA 1 cut(s) 150
Psp6I CCWGG 1 cut(s) 312
PspGI CCWGG 1 cut(s) 312
PsrI GAACNNNNNNTAC 2 cut(s) 450, 482
PstNI CAGNNNCTG 1 cut(s) 800
PsyI GACNNNGTC 1 cut(s) 74
PvuII CAGCTG 1 cut(s) 800
RsaI GTAC 3 cut(s) 440, 749, 821
RsaNI GTAC 3 cut(s) 439, 748, 820
RseI CAYNNNNRTG 1 cut(s) 285
SapI GCTCTTC 1 cut(s) 421
SaqAI TTAA 2 cut(s) 135, 329
SatI GCNGC 7 cut(s) 361, 370, 519, 792, 795, 798, 801
Sau3AI GATC 1 cut(s) 334
ScaI AGTACT 1 cut(s) 821
SchI GAGTC 1 cut(s) 314
ScrFI CCNGG 1 cut(s) 314
SduI GDGCHC 3 cut(s) 243, 433, 599
SfaNI GCATC 5 cut(s) 106, 222, 510, 537, 570
SmiMI CAYNNNNRTG 1 cut(s) 285
SmlI CTYRAG 2 cut(s) 178, 823
SmoI CTYRAG 2 cut(s) 178, 823
Sse9I AATT 7 cut(s) 132, 151, 205, 276, 477, 672, 754
SsiI CCGC 1 cut(s) 9
StyD4I CCNGG 1 cut(s) 312
TaaI ACNGT 2 cut(s) 380, 443
TaiI ACGT 1 cut(s) 459
TaqI TCGA 4 cut(s) 348, 411, 537, 805
TasI AATT 7 cut(s) 132, 151, 205, 276, 477, 672, 754
TatI WGTACW 2 cut(s) 438, 819
TfiI GAWTC 1 cut(s) 710
Tru1I TTAA 2 cut(s) 135, 329
Tru9I TTAA 2 cut(s) 135, 329
TscAI CASTG 5 cut(s) 250, 391, 452, 582, 609
TseFI GTSAC 2 cut(s) 245, 648
TseI GCWGC 7 cut(s) 360, 369, 518, 791, 794, 797, 800
Tsp45I GTSAC 2 cut(s) 245, 648
TspDTI ATGAA 4 cut(s) 173, 208, 288, 698
TspGWI ACGGA 2 cut(s) 85, 713
TspRI CASTG 5 cut(s) 250, 391, 452, 582, 609
Tth111I GACNNNGTC 1 cut(s) 74
XapI RAATTY 2 cut(s) 276, 754
ZrmI AGTACT 1 cut(s) 821
Zsp2I ATGCAT 1 cut(s) 343
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.