4Fe-4S single cluster domain of Ferredoxin I
Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.
| Species | Orthologous Gene IDs |
|---|---|
| arabidopsis_thaliana | AT2G42750 |
| fragaria_vesca | FvH4_6g27700 |
| malus_domestica | MD17G1264200.v1.1 |
| prunus_persica | Prupe.3G113500_v2.0.a1 |
| pyrus_communis | pycom09g15350 |
| rosa_chinensis | RchiOBHm_Chr2g0130851 |
| rosa_laevigata | RLG00000019154 |
| rosa_multiflora | Rmu_co8506113.1_g000001 Rmu_sc0003629.1_g000017 |
| rosa_roxburghii | Rroxscaffold_2G00113490 |
| rosa_rugosa | Rorug02G0293700 |
| rosa_samantha | Rh2AG345000 Rh2BG353400 Rh2DG371300 |
| rosa_wichuraiana | Rw2G027460 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| Acc16I | TGCGCA | 1 cut(s) | 680 |
| Acc36I | ACCTGC | 2 cut(s) | 497, 707 |
| AccBSI | CCGCTC | 1 cut(s) | 69 |
| AccI | GTMKAC | 1 cut(s) | 567 |
| AccII | CGCG | 1 cut(s) | 93 |
| AccIII | TCCGGA | 1 cut(s) | 322 |
| AciI | CCGC | 3 cut(s) | 69, 737, 927 |
| AcoI | YGGCCR | 1 cut(s) | 99 |
| AcsI | RAATTY | 2 cut(s) | 334, 405 |
| AcuI | CTGAAG | 2 cut(s) | 51, 177 |
| AfaI | GTAC | 2 cut(s) | 881, 953 |
| AfiI | CCNNNNNNNGG | 1 cut(s) | 68 |
| AgsI | TTSAA | 2 cut(s) | 599, 668 |
| AjnI | CCWGG | 1 cut(s) | 101 |
| AluBI | AGCT | 6 cut(s) | 35, 120, 450, 923, 935, 984 |
| AluI | AGCT | 6 cut(s) | 35, 120, 450, 923, 935, 984 |
| Alw26I | GTCTC | 1 cut(s) | 320 |
| AlwNI | CAGNNNCTG | 1 cut(s) | 13 |
| Aor13HI | TCCGGA | 1 cut(s) | 322 |
| AoxI | GGCC | 1 cut(s) | 99 |
| ApeKI | GCWGC | 6 cut(s) | 385, 498, 647, 923, 929, 932 |
| ApoI | RAATTY | 2 cut(s) | 334, 405 |
| AspLEI | GCGC | 3 cut(s) | 93, 390, 681 |
| AspS9I | GGNCC | 1 cut(s) | 105 |
| AsuHPI | GGTGA | 1 cut(s) | 326 |
| AvaII | GGWCC | 1 cut(s) | 105 |
| BalI | TGGCCA | 1 cut(s) | 101 |
| BanII | GRGCYC | 2 cut(s) | 188, 728 |
| BbsI | GAAGAC | 1 cut(s) | 552 |
| BbvI | GCAGC | 6 cut(s) | 397, 485, 634, 910, 916, 944 |
| BccI | CCATC | 3 cut(s) | 124, 759, 936 |
| BciT130I | CCWGG | 1 cut(s) | 103 |
| BcoDI | GTCTC | 1 cut(s) | 320 |
| BfaI | CTAG | 1 cut(s) | 981 |
| BfmI | CTRYAG | 1 cut(s) | 930 |
| BfuAI | ACCTGC | 2 cut(s) | 497, 707 |
| BisI | GCNGC | 7 cut(s) | 386, 499, 648, 924, 927, 930, 933 |
| BlpI | GCTNAGC | 1 cut(s) | 727 |
| BlsI | GCNGC | 7 cut(s) | 387, 500, 649, 925, 928, 931, 934 |
| BmcAI | AGTACT | 1 cut(s) | 953 |
| Bme1390I | CCNGG | 1 cut(s) | 103 |
| Bme18I | GGWCC | 1 cut(s) | 105 |
| BmgT120I | GGNCC | 1 cut(s) | 105 |
| BmrFI | CCNGG | 1 cut(s) | 103 |
| BmrI | ACTGGG | 1 cut(s) | 859 |
| BmsI | GCATC | 4 cut(s) | 235, 639, 699, 740 |
| BmuI | ACTGGG | 1 cut(s) | 859 |
| BpiI | GAAGAC | 1 cut(s) | 552 |
| BplI | GAGNNNNNCTC | 2 cut(s) | 989, 1021 |
| Bpu1102I | GCTNAGC | 1 cut(s) | 727 |
| BpuEI | CTTGAG | 5 cut(s) | 23, 61, 142, 328, 940 |
| BsaJI | CCNNGG | 1 cut(s) | 86 |
| BsaWI | WCCGGW | 1 cut(s) | 322 |
| Bsc4I | CCNNNNNNNGG | 1 cut(s) | 68 |
| Bse118I | RCCGGY | 1 cut(s) | 107 |
| Bse1I | ACTGG | 1 cut(s) | 854 |
| Bse3DI | GCAATG | 1 cut(s) | 659 |
| BseAI | TCCGGA | 1 cut(s) | 322 |
| BseBI | CCWGG | 1 cut(s) | 103 |
| BseDI | CCNNGG | 1 cut(s) | 86 |
| BseGI | GGATG | 4 cut(s) | 298, 630, 745, 816 |
| BseLI | CCNNNNNNNGG | 1 cut(s) | 68 |
| BseMI | GCAATG | 1 cut(s) | 659 |
| BseMII | CTCAG | 4 cut(s) | 20, 171, 385, 741 |
| BseNI | ACTGG | 1 cut(s) | 854 |
| BseRI | GAGGAG | 1 cut(s) | 908 |
| BseXI | GCAGC | 6 cut(s) | 397, 485, 634, 910, 916, 944 |
| BseYI | CCCAGC | 1 cut(s) | 140 |
| BsgI | GTGCAG | 3 cut(s) | 404, 438, 633 |
| Bsh1236I | CGCG | 1 cut(s) | 93 |
| BshFI | GGCC | 1 cut(s) | 101 |
| BsiSI | CCGG | 2 cut(s) | 108, 323 |
| BslFI | GGGAC | 1 cut(s) | 147 |
| BslI | CCNNNNNNNGG | 1 cut(s) | 68 |
| BsmAI | GTCTC | 1 cut(s) | 320 |
| BsmFI | GGGAC | 1 cut(s) | 147 |
| BsnI | GGCC | 1 cut(s) | 101 |
| Bsp1286I | GDGCHC | 2 cut(s) | 188, 728 |
| Bsp13I | TCCGGA | 1 cut(s) | 322 |
| Bsp143I | GATC | 2 cut(s) | 261, 463 |
| Bsp1720I | GCTNAGC | 1 cut(s) | 727 |
| Bsp19I | CCATGG | 1 cut(s) | 86 |
| BspACI | CCGC | 3 cut(s) | 69, 737, 927 |
| BspANI | GGCC | 1 cut(s) | 101 |
| BspCNI | CTCAG | 4 cut(s) | 19, 172, 384, 740 |
| BspEI | TCCGGA | 1 cut(s) | 322 |
| BspFNI | CGCG | 1 cut(s) | 93 |
| BspMAI | CTGCAG | 1 cut(s) | 934 |
| BspMI | ACCTGC | 2 cut(s) | 497, 707 |
| BspQI | GCTCTTC | 2 cut(s) | 145, 550 |
| BsrBI | CCGCTC | 1 cut(s) | 69 |
| BsrDI | GCAATG | 1 cut(s) | 659 |
| BsrFI | RCCGGY | 1 cut(s) | 107 |
| BsrI | ACTGG | 1 cut(s) | 854 |
| BssAI | RCCGGY | 1 cut(s) | 107 |
| BssECI | CCNNGG | 1 cut(s) | 86 |
| BssMI | GATC | 2 cut(s) | 261, 463 |
| BssNAI | GTATAC | 1 cut(s) | 568 |
| BssT1I | CCWWGG | 1 cut(s) | 86 |
| Bst1107I | GTATAC | 1 cut(s) | 568 |
| Bst2UI | CCWGG | 1 cut(s) | 103 |
| Bst4CI | ACNGT | 2 cut(s) | 509, 572 |
| Bst6I | CTCTTC | 2 cut(s) | 145, 550 |
| BstAPI | GCANNNNNTGC | 2 cut(s) | 425, 498 |
| BstC8I | GCNNGC | 2 cut(s) | 714, 780 |
| BstDEI | CTNAG | 4 cut(s) | 6, 180, 371, 727 |
| BstDSI | CCRYGG | 1 cut(s) | 86 |
| BstF5I | GGATG | 4 cut(s) | 298, 630, 745, 816 |
| BstFNI | CGCG | 1 cut(s) | 93 |
| BstHHI | GCGC | 3 cut(s) | 93, 390, 681 |
| BstKTI | GATC | 2 cut(s) | 264, 466 |
| BstMAI | GTCTC | 1 cut(s) | 320 |
| BstMBI | GATC | 2 cut(s) | 261, 463 |
| BstNI | CCWGG | 1 cut(s) | 103 |
| BstNSI | RCATGY | 1 cut(s) | 140 |
| BstSCI | CCNGG | 1 cut(s) | 101 |
| BstSFI | CTRYAG | 1 cut(s) | 930 |
| BstUI | CGCG | 1 cut(s) | 93 |
| BstV1I | GCAGC | 6 cut(s) | 397, 485, 634, 910, 916, 944 |
| BstV2I | GAAGAC | 1 cut(s) | 552 |
| BstZ17I | GTATAC | 1 cut(s) | 568 |
| BsuRI | GGCC | 1 cut(s) | 101 |
| BtgI | CCRYGG | 1 cut(s) | 86 |
| BtsCI | GGATG | 4 cut(s) | 298, 630, 745, 816 |
| BtsIMutI | CAGTG | 4 cut(s) | 27, 379, 581, 704 |
| BveI | ACCTGC | 2 cut(s) | 497, 707 |
| Cac8I | GCNNGC | 2 cut(s) | 714, 780 |
| CaiI | CAGNNNCTG | 1 cut(s) | 13 |
| CfoI | GCGC | 3 cut(s) | 93, 390, 681 |
| Cfr10I | RCCGGY | 1 cut(s) | 107 |
| Cfr13I | GGNCC | 1 cut(s) | 105 |
| CseI | GACGC | 1 cut(s) | 209 |
| Csp6I | GTAC | 2 cut(s) | 880, 952 |
| CviAII | CATG | 5 cut(s) | 87, 137, 286, 391, 410 |
| CviQI | GTAC | 2 cut(s) | 880, 952 |
| DdeI | CTNAG | 4 cut(s) | 6, 180, 371, 727 |
| DpnI | GATC | 2 cut(s) | 263, 465 |
| DpnII | GATC | 2 cut(s) | 261, 463 |
| EaeI | YGGCCR | 1 cut(s) | 99 |
| Eam1104I | CTCTTC | 2 cut(s) | 145, 550 |
| EarI | CTCTTC | 2 cut(s) | 145, 550 |
| Eco130I | CCWWGG | 1 cut(s) | 86 |
| Eco24I | GRGCYC | 2 cut(s) | 188, 728 |
| Eco47I | GGWCC | 1 cut(s) | 105 |
| Eco57I | CTGAAG | 2 cut(s) | 51, 177 |
| EcoRII | CCWGG | 1 cut(s) | 101 |
| EcoT14I | CCWWGG | 1 cut(s) | 86 |
| EcoT22I | ATGCAT | 1 cut(s) | 421 |
| EcoT38I | GRGCYC | 2 cut(s) | 188, 728 |
| ErhI | CCWWGG | 1 cut(s) | 86 |
| FaeI | CATG | 5 cut(s) | 90, 140, 289, 394, 413 |
| FaqI | GGGAC | 1 cut(s) | 147 |
| FatI | CATG | 5 cut(s) | 86, 136, 285, 390, 409 |
| FblI | GTMKAC | 1 cut(s) | 567 |
| Fnu4HI | GCNGC | 7 cut(s) | 386, 499, 648, 924, 927, 930, 933 |
| FokI | GGATG | 4 cut(s) | 285, 617, 752, 823 |
| FriOI | GRGCYC | 2 cut(s) | 188, 728 |
| Fsp4HI | GCNGC | 7 cut(s) | 386, 499, 648, 924, 927, 930, 933 |
| FspBI | CTAG | 1 cut(s) | 981 |
| FspI | TGCGCA | 1 cut(s) | 680 |
| GlaI | GCGC | 3 cut(s) | 92, 389, 680 |
| GluI | GCNGC | 7 cut(s) | 386, 499, 648, 924, 927, 930, 933 |
| GsaI | CCCAGC | 1 cut(s) | 144 |
| HaeIII | GGCC | 1 cut(s) | 101 |
| HapII | CCGG | 2 cut(s) | 108, 323 |
| HgaI | GACGC | 1 cut(s) | 209 |
| HhaI | GCGC | 3 cut(s) | 93, 390, 681 |
| Hin1II | CATG | 5 cut(s) | 90, 140, 289, 394, 413 |
| Hin6I | GCGC | 3 cut(s) | 91, 388, 679 |
| HinP1I | GCGC | 3 cut(s) | 91, 388, 679 |
| HincII | GTYRAC | 1 cut(s) | 199 |
| HindII | GTYRAC | 1 cut(s) | 199 |
| HinfI | GANTC | 4 cut(s) | 165, 171, 827, 842 |
| HpaII | CCGG | 2 cut(s) | 108, 323 |
| HphI | GGTGA | 1 cut(s) | 326 |
| Hpy166II | GTNNAC | 3 cut(s) | 199, 486, 568 |
| Hpy188I | TCNGA | 5 cut(s) | 170, 749, 832, 892, 1009 |
| Hpy188III | TCNNGA | 9 cut(s) | 78, 242, 265, 302, 323, 587, 762, 957, 995 |
| Hpy8I | GTNNAC | 3 cut(s) | 199, 486, 568 |
| HpyAV | CCTTC | 2 cut(s) | 283, 954 |
| HpyCH4III | ACNGT | 2 cut(s) | 509, 572 |
| HpyF3I | CTNAG | 4 cut(s) | 6, 180, 371, 727 |
| Hsp92II | CATG | 5 cut(s) | 90, 140, 289, 394, 413 |
| HspAI | GCGC | 3 cut(s) | 91, 388, 679 |
| Kpn2I | TCCGGA | 1 cut(s) | 322 |
| Kzo9I | GATC | 2 cut(s) | 261, 463 |
| LguI | GCTCTTC | 2 cut(s) | 145, 550 |
| Lsp1109I | GCAGC | 6 cut(s) | 397, 485, 634, 910, 916, 944 |
| LweI | GCATC | 4 cut(s) | 235, 639, 699, 740 |
| MaeI | CTAG | 1 cut(s) | 981 |
| MaeIII | GTNAC | 1 cut(s) | 374 |
| MalI | GATC | 2 cut(s) | 263, 465 |
| MbiI | CCGCTC | 1 cut(s) | 69 |
| MboI | GATC | 2 cut(s) | 261, 463 |
| MboII | GAAGA | 5 cut(s) | 162, 557, 567, 680, 951 |
| MfeI | CAATTG | 2 cut(s) | 280, 606 |
| MhlI | GDGCHC | 2 cut(s) | 188, 728 |
| MlsI | TGGCCA | 1 cut(s) | 101 |
| MluCI | AATT | 4 cut(s) | 280, 334, 405, 606 |
| MluNI | TGGCCA | 1 cut(s) | 101 |
| MlyI | GAGTC | 2 cut(s) | 174, 180 |
| Mox20I | TGGCCA | 1 cut(s) | 101 |
| Mph1103I | ATGCAT | 1 cut(s) | 421 |
| MroI | TCCGGA | 1 cut(s) | 322 |
| MscI | TGGCCA | 1 cut(s) | 101 |
| MslI | CAYNNNNRTG | 1 cut(s) | 414 |
| Msp20I | TGGCCA | 1 cut(s) | 101 |
| MspA1I | CMGCKG | 2 cut(s) | 737, 929 |
| MspI | CCGG | 2 cut(s) | 108, 323 |
| MspR9I | CCNGG | 1 cut(s) | 103 |
| MunI | CAATTG | 2 cut(s) | 280, 606 |
| MvaI | CCWGG | 1 cut(s) | 103 |
| MvnI | CGCG | 1 cut(s) | 93 |
| NcoI | CCATGG | 1 cut(s) | 86 |
| NdeII | GATC | 2 cut(s) | 261, 463 |
| NlaIII | CATG | 5 cut(s) | 90, 140, 289, 394, 413 |
| NmuCI | GTSAC | 1 cut(s) | 374 |
| NsbI | TGCGCA | 1 cut(s) | 680 |
| NsiI | ATGCAT | 1 cut(s) | 421 |
| NspI | RCATGY | 1 cut(s) | 140 |
| PciSI | GCTCTTC | 2 cut(s) | 145, 550 |
| PfeI | GAWTC | 2 cut(s) | 827, 842 |
| PkrI | GCNGC | 7 cut(s) | 387, 500, 649, 925, 928, 931, 934 |
| PleI | GAGTC | 2 cut(s) | 173, 179 |
| PpsI | GAGTC | 2 cut(s) | 173, 179 |
| Psp6I | CCWGG | 1 cut(s) | 101 |
| PspFI | CCCAGC | 1 cut(s) | 140 |
| PspGI | CCWGG | 1 cut(s) | 101 |
| PspPI | GGNCC | 1 cut(s) | 105 |
| PstI | CTGCAG | 1 cut(s) | 934 |
| PstNI | CAGNNNCTG | 1 cut(s) | 13 |
| RsaI | GTAC | 2 cut(s) | 881, 953 |
| RsaNI | GTAC | 2 cut(s) | 880, 952 |
| RseI | CAYNNNNRTG | 1 cut(s) | 414 |
| SapI | GCTCTTC | 2 cut(s) | 145, 550 |
| SatI | GCNGC | 7 cut(s) | 386, 499, 648, 924, 927, 930, 933 |
| Sau3AI | GATC | 2 cut(s) | 261, 463 |
| Sau96I | GGNCC | 1 cut(s) | 105 |
| ScaI | AGTACT | 1 cut(s) | 953 |
| SchI | GAGTC | 2 cut(s) | 174, 180 |
| ScrFI | CCNGG | 1 cut(s) | 103 |
| SduI | GDGCHC | 2 cut(s) | 188, 728 |
| SfaNI | GCATC | 4 cut(s) | 235, 639, 699, 740 |
| SfcI | CTRYAG | 1 cut(s) | 930 |
| SinI | GGWCC | 1 cut(s) | 105 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 414 |
| SmlI | CTYRAG | 5 cut(s) | 38, 76, 121, 307, 955 |
| SmoI | CTYRAG | 5 cut(s) | 38, 76, 121, 307, 955 |
| Sse9I | AATT | 4 cut(s) | 280, 334, 405, 606 |
| SsiI | CCGC | 3 cut(s) | 69, 737, 927 |
| SspMI | CTAG | 1 cut(s) | 981 |
| StyD4I | CCNGG | 1 cut(s) | 101 |
| StyI | CCWWGG | 1 cut(s) | 86 |
| TaaI | ACNGT | 2 cut(s) | 509, 572 |
| TaqI | TCGA | 3 cut(s) | 540, 763, 937 |
| TasI | AATT | 4 cut(s) | 280, 334, 405, 606 |
| TatI | WGTACW | 1 cut(s) | 951 |
| TauI | GCSGC | 1 cut(s) | 929 |
| TfiI | GAWTC | 2 cut(s) | 827, 842 |
| TscAI | CASTG | 4 cut(s) | 34, 379, 581, 711 |
| TseFI | GTSAC | 1 cut(s) | 374 |
| TseI | GCWGC | 6 cut(s) | 385, 498, 647, 923, 929, 932 |
| Tsp45I | GTSAC | 1 cut(s) | 374 |
| TspDTI | ATGAA | 5 cut(s) | 302, 337, 398, 417, 687 |
| TspRI | CASTG | 4 cut(s) | 34, 379, 581, 711 |
| VpaK11BI | GGWCC | 1 cut(s) | 105 |
| XapI | RAATTY | 2 cut(s) | 334, 405 |
| XceI | RCATGY | 1 cut(s) | 140 |
| XmiI | GTMKAC | 1 cut(s) | 567 |
| XspI | CTAG | 1 cut(s) | 981 |
| ZrmI | AGTACT | 1 cut(s) | 953 |
| Zsp2I | ATGCAT | 1 cut(s) | 421 |