FvH4_6g34840

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb6
OG0016894
Physical Location & Seq
Forward (+)
27501035 .. 27501860
826 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_6g34840.t1

Sequence Viewer

Length: 390 bp
ATGGCAACCTATGCATACGCAAATCACCAAAACTCGTCTCAAAGGTCAGTAGCCATGGTGCTGGCTCTAGTTTCTGCAATCGTACTCTCCCCACTATATCATGTATCGTCTCGAAAAACCGATACAAGATACTATGAGACAAAATGGATGAGCTCCGGGTTTGTTCTTCCCATGGTCCTTGCTGGACTTATCATTGCTATTAAAACCACCTCCTCCTCATCGTCAAGTTCATCAGCATCGACACGAGGAGGTTCTTCTTCTATTCCCTCTCCAGATCCTTCGTGGGTGCTAAGAATTGGGAGTTCAAGCTGGGGACTTGCTGGGGTTTTGGTCATGTTGATGCTTGTGCTTTCATGGCAAAGTTCTATCCATGAATTTTTCTGGAGATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

130

Amino Acids

14.01

Weight (kDa)

9.99

Isoelectric Point (pI)

61.43

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0016894)

Species Orthologous Gene IDs
fragaria_vesca FvH4_6g34840
malus_domestica MD09G1181800.v1.1
prunus_persica Prupe.3G039900_v2.0.a1
pyrus_communis pycom17g15980
rosa_chinensis RchiOBHm_Chr2g0145711
rosa_laevigata RLG00000020164
rosa_multiflora Rmu_sc0000473.1_g000009
rosa_roxburghii Rroxscaffold_152G00434710 Rroxscaffold_2G00100490
rosa_rugosa Rorug02G0392900
rosa_samantha Rh2BG459500 Rh2CG434100 Rh2DG468900
rosa_wichuraiana Rw2G036540

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AclWI GGATC 1 cut(s) 269
AcsI RAATTY 1 cut(s) 374
AfaI GTAC 1 cut(s) 84
AgsI TTSAA 1 cut(s) 306
AluBI AGCT 2 cut(s) 153, 309
AluI AGCT 2 cut(s) 153, 309
Alw21I GWGCWC 1 cut(s) 155
Alw26I GTCTC 3 cut(s) 42, 114, 131
AlwI GGATC 1 cut(s) 269
ApoI RAATTY 1 cut(s) 374
AspS9I GGNCC 1 cut(s) 175
AsuC2I CCSGG 1 cut(s) 157
AsuHPI GGTGA 1 cut(s) 17
AvaII GGWCC 1 cut(s) 175
BanII GRGCYC 1 cut(s) 155
BauI CACGAG 1 cut(s) 243
Bbv12I GWGCWC 1 cut(s) 155
BcnI CCSGG 1 cut(s) 157
BcoDI GTCTC 3 cut(s) 42, 114, 131
BfaI CTAG 1 cut(s) 68
Bme1390I CCNGG 1 cut(s) 157
Bme18I GGWCC 1 cut(s) 175
BmgT120I GGNCC 1 cut(s) 175
BmrFI CCNGG 1 cut(s) 157
BmsI GCATC 2 cut(s) 245, 330
BpmI CTGGAG 1 cut(s) 255
BpuMI CCSGG 1 cut(s) 157
BsaJI CCNNGG 2 cut(s) 54, 171
Bse3DI GCAATG 1 cut(s) 192
BseDI CCNNGG 2 cut(s) 54, 171
BseGI GGATG 1 cut(s) 153
BseMI GCAATG 1 cut(s) 192
BseRI GAGGAG 3 cut(s) 202, 205, 261
BseYI CCCAGC 2 cut(s) 309, 320
BsiHKAI GWGCWC 1 cut(s) 155
BsiSI CCGG 1 cut(s) 156
BslFI GGGAC 1 cut(s) 327
BsmAI GTCTC 3 cut(s) 42, 114, 131
BsmBI CGTCTC 2 cut(s) 42, 114
BsmFI GGGAC 1 cut(s) 327
Bsp1286I GDGCHC 1 cut(s) 155
Bsp143I GATC 1 cut(s) 274
Bsp19I CCATGG 2 cut(s) 54, 171
BspPI GGATC 1 cut(s) 269
BsrDI GCAATG 1 cut(s) 192
BssECI CCNNGG 2 cut(s) 54, 171
BssMI GATC 1 cut(s) 274
BssSI CACGAG 1 cut(s) 243
BssT1I CCWWGG 2 cut(s) 54, 171
Bst2BI CACGAG 1 cut(s) 243
BstAPI GCANNNNNTGC 1 cut(s) 11
BstC8I GCNNGC 1 cut(s) 63
BstDEI CTNAG 1 cut(s) 290
BstDSI CCRYGG 2 cut(s) 54, 171
BstF5I GGATG 1 cut(s) 153
BstKTI GATC 1 cut(s) 277
BstMAI GTCTC 3 cut(s) 42, 114, 131
BstMBI GATC 1 cut(s) 274
BstMWI GCNNNNNNNGC 2 cut(s) 11, 355
BstSCI CCNGG 1 cut(s) 155
BstX2I RGATCY 1 cut(s) 274
BstXI CCANNNNNNTGG 1 cut(s) 61
BstYI RGATCY 1 cut(s) 274
BtgI CCRYGG 2 cut(s) 54, 171
BtsCI GGATG 1 cut(s) 153
Cac8I GCNNGC 1 cut(s) 63
Cfr13I GGNCC 1 cut(s) 175
Csp6I GTAC 1 cut(s) 83
CviAII CATG 6 cut(s) 55, 101, 172, 334, 354, 371
CviJI RGCY 4 cut(s) 53, 65, 153, 309
CviKI_1 RGCY 4 cut(s) 53, 65, 153, 309
CviQI GTAC 1 cut(s) 83
DdeI CTNAG 1 cut(s) 290
DpnI GATC 1 cut(s) 276
DpnII GATC 1 cut(s) 274
Ecl136II GAGCTC 1 cut(s) 153
Eco130I CCWWGG 2 cut(s) 54, 171
Eco24I GRGCYC 1 cut(s) 155
Eco47I GGWCC 1 cut(s) 175
Eco53kI GAGCTC 1 cut(s) 153
EcoICRI GAGCTC 1 cut(s) 153
EcoT14I CCWWGG 2 cut(s) 54, 171
EcoT22I ATGCAT 1 cut(s) 16
EcoT38I GRGCYC 1 cut(s) 155
ErhI CCWWGG 2 cut(s) 54, 171
Esp3I CGTCTC 2 cut(s) 42, 114
FaeI CATG 6 cut(s) 58, 104, 175, 337, 357, 374
FaqI GGGAC 1 cut(s) 327
FatI CATG 6 cut(s) 54, 100, 171, 333, 353, 370
FokI GGATG 1 cut(s) 160
FriOI GRGCYC 1 cut(s) 155
FspBI CTAG 1 cut(s) 68
GsaI CCCAGC 2 cut(s) 313, 324
GsuI CTGGAG 1 cut(s) 255
HapII CCGG 1 cut(s) 156
Hin1II CATG 6 cut(s) 58, 104, 175, 337, 357, 374
HpaII CCGG 1 cut(s) 156
HphI GGTGA 1 cut(s) 17
Hpy188III TCNNGA 3 cut(s) 111, 272, 382
HpyAV CCTTC 1 cut(s) 288
HpyCH4V TGCA 2 cut(s) 14, 77
HpyF10VI GCNNNNNNNGC 2 cut(s) 11, 355
HpyF3I CTNAG 1 cut(s) 290
Hsp92II CATG 6 cut(s) 58, 104, 175, 337, 357, 374
Kzo9I GATC 1 cut(s) 274
LmnI GCTCC 1 cut(s) 158
LpnPI CCDG 7 cut(s) 47, 168, 169, 285, 295, 306, 367
LweI GCATC 2 cut(s) 245, 330
MaeI CTAG 1 cut(s) 68
MalI GATC 1 cut(s) 276
MboI GATC 1 cut(s) 274
MboII GAAGA 3 cut(s) 158, 246, 249
MflI RGATCY 1 cut(s) 274
MhlI GDGCHC 1 cut(s) 155
MluCI AATT 2 cut(s) 294, 374
MnlI CCTC 6 cut(s) 220, 223, 226, 239, 242, 277
Mph1103I ATGCAT 1 cut(s) 16
MseI TTAA 1 cut(s) 201
MslI CAYNNNNRTG 1 cut(s) 338
MspI CCGG 1 cut(s) 156
MspR9I CCNGG 1 cut(s) 157
MwoI GCNNNNNNNGC 2 cut(s) 11, 355
NciI CCSGG 1 cut(s) 157
NcoI CCATGG 2 cut(s) 54, 171
NdeII GATC 1 cut(s) 274
NlaIII CATG 6 cut(s) 58, 104, 175, 337, 357, 374
NsiI ATGCAT 1 cut(s) 16
Psp124BI GAGCTC 1 cut(s) 155
PspFI CCCAGC 2 cut(s) 309, 320
PspPI GGNCC 1 cut(s) 175
PsuI RGATCY 1 cut(s) 274
RsaI GTAC 1 cut(s) 84
RsaNI GTAC 1 cut(s) 83
RseI CAYNNNNRTG 1 cut(s) 338
SacI GAGCTC 1 cut(s) 155
SaqAI TTAA 1 cut(s) 201
Sau3AI GATC 1 cut(s) 274
Sau96I GGNCC 1 cut(s) 175
ScrFI CCNGG 1 cut(s) 157
SduI GDGCHC 1 cut(s) 155
SetI ASST 6 cut(s) 11, 47, 155, 212, 253, 311
SfaNI GCATC 2 cut(s) 245, 330
SinI GGWCC 1 cut(s) 175
SmiMI CAYNNNNRTG 1 cut(s) 338
Sse9I AATT 2 cut(s) 294, 374
SspMI CTAG 1 cut(s) 68
SstI GAGCTC 1 cut(s) 155
StyD4I CCNGG 1 cut(s) 155
StyI CCWWGG 2 cut(s) 54, 171
TaqI TCGA 2 cut(s) 112, 239
TasI AATT 2 cut(s) 294, 374
Tru1I TTAA 1 cut(s) 201
Tru9I TTAA 1 cut(s) 201
TspDTI ATGAA 3 cut(s) 219, 342, 387
VpaK11BI GGWCC 1 cut(s) 175
XapI RAATTY 1 cut(s) 374
XcmI CCANNNNNNNNNTGG 1 cut(s) 279
XspI CTAG 1 cut(s) 68
Zsp2I ATGCAT 1 cut(s) 16
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.