RLG00000020164

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr4
OG0016894
Physical Location & Seq
Forward (+)
61902320 .. 61904489
2170 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000020164

Sequence Viewer

Length: 585 bp
ATGGCAACCTATGCGTATGCAAATCACCAGAACTCATCTCAAAGGTCAGTAGCCATGGTACTGGCTCTAGTATCTGCAATTGTACTCTCACCACTATATAATGTGACGAGTCGAAAAGCCGATACACGATATTATGAAACGAAGTGGATGAGCTCTGGGTTTGTTCTTCCTATGGTTCTTGCTGGACTAATTATTGCTATTAAAACCACCTCGTCATCTTCCAATTCATCTTCATCGACACAAGGAAGCTCTTCTTTTATTCCCTCTGCGGATCCTTCGTGGGTACTAAGAATTGGGAGTTCAAGCTGGGGACTTGCTGGGGTTTTAGTCATTCTGAGTATATCCAACTTCCGGTTCTCTCCTCACCGGCTCACCTCTAAAGGAAAGAACCGTACTGCAGAGCTGCGGTTAAAGACTAGGCCAATTTCCGGGTCTTCCTTCTTCTCCCGCTCACCGCTCACCAAAGCCCTAGCTTTGATCGCAATCGGCTGTCTCTCTCGCAAACCCAACAGCCTCTTTCTCTCTAACTACACGGCGATACAAAACCAGGTTATTCTTGCTACAATTTCTTCGGCCTTGGTGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

195

Amino Acids

20.84

Weight (kDa)

10.85

Isoelectric Point (pI)

45.95

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0016894)

Species Orthologous Gene IDs
fragaria_vesca FvH4_6g34840
malus_domestica MD09G1181800.v1.1
prunus_persica Prupe.3G039900_v2.0.a1
pyrus_communis pycom17g15980
rosa_chinensis RchiOBHm_Chr2g0145711
rosa_laevigata RLG00000020164
rosa_multiflora Rmu_sc0000473.1_g000009
rosa_roxburghii Rroxscaffold_152G00434710 Rroxscaffold_2G00100490
rosa_rugosa Rorug02G0392900
rosa_samantha Rh2BG459500 Rh2CG434100 Rh2DG468900
rosa_wichuraiana Rw2G036540

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 2 cut(s) 450, 457
AciI CCGC 4 cut(s) 269, 406, 448, 455
AclWI GGATC 2 cut(s) 266, 279
AfaI GTAC 4 cut(s) 60, 84, 285, 394
AfiI CCNNNNNNNGG 2 cut(s) 351, 428
AgsI TTSAA 1 cut(s) 303
AjnI CCWGG 1 cut(s) 546
AjuI GAANNNNNNNTTGG 2 cut(s) 338, 370
AluBI AGCT 5 cut(s) 153, 249, 306, 403, 473
AluI AGCT 5 cut(s) 153, 249, 306, 403, 473
Alw21I GWGCWC 1 cut(s) 155
Alw26I GTCTC 1 cut(s) 497
AlwI GGATC 2 cut(s) 266, 279
AoxI GGCC 2 cut(s) 419, 573
ApeKI GCWGC 1 cut(s) 403
Asp700I GAANNNNTTC 1 cut(s) 250
AsuC2I CCSGG 1 cut(s) 430
AsuHPI GGTGA 6 cut(s) 17, 81, 356, 364, 444, 451
BamHI GGATCC 1 cut(s) 271
BanII GRGCYC 1 cut(s) 155
BbsI GAAGAC 1 cut(s) 426
Bbv12I GWGCWC 1 cut(s) 155
BbvI GCAGC 1 cut(s) 390
BceAI ACGGC 1 cut(s) 549
BciT130I CCWGG 1 cut(s) 548
BcnI CCSGG 1 cut(s) 430
BcoDI GTCTC 1 cut(s) 497
BfaI CTAG 3 cut(s) 68, 417, 470
BfmI CTRYAG 1 cut(s) 396
BisI GCNGC 1 cut(s) 404
BlsI GCNGC 1 cut(s) 405
Bme1390I CCNGG 2 cut(s) 430, 548
BmiI GGNNCC 1 cut(s) 273
BmrFI CCNGG 2 cut(s) 430, 548
BpiI GAAGAC 1 cut(s) 426
BpuMI CCSGG 1 cut(s) 430
BsaBI GATNNNNATC 1 cut(s) 482
BsaJI CCNNGG 2 cut(s) 54, 576
BsaWI WCCGGW 1 cut(s) 351
Bsc4I CCNNNNNNNGG 2 cut(s) 351, 428
Bse118I RCCGGY 1 cut(s) 366
Bse1I ACTGG 1 cut(s) 66
Bse8I GATNNNNATC 1 cut(s) 482
BseBI CCWGG 1 cut(s) 548
BseDI CCNNGG 2 cut(s) 54, 576
BseGI GGATG 1 cut(s) 153
BseJI GATNNNNATC 1 cut(s) 482
BseLI CCNNNNNNNGG 2 cut(s) 351, 428
BseMII CTCAG 1 cut(s) 326
BseNI ACTGG 1 cut(s) 66
BseRI GAGGAG 1 cut(s) 351
BseXI GCAGC 1 cut(s) 390
BseYI CCCAGC 2 cut(s) 306, 317
BshFI GGCC 2 cut(s) 421, 575
BsiHKAI GWGCWC 1 cut(s) 155
BsiSI CCGG 3 cut(s) 352, 367, 429
BslFI GGGAC 1 cut(s) 324
BslI CCNNNNNNNGG 2 cut(s) 351, 428
BsmAI GTCTC 1 cut(s) 497
BsmFI GGGAC 1 cut(s) 324
BsnI GGCC 2 cut(s) 421, 575
Bsp1286I GDGCHC 1 cut(s) 155
Bsp143I GATC 2 cut(s) 271, 477
Bsp19I CCATGG 1 cut(s) 54
BspACI CCGC 4 cut(s) 269, 406, 448, 455
BspANI GGCC 2 cut(s) 421, 575
BspCNI CTCAG 1 cut(s) 327
BspLI GGNNCC 1 cut(s) 273
BspMAI CTGCAG 1 cut(s) 400
BspPI GGATC 2 cut(s) 266, 279
BspQI GCTCTTC 1 cut(s) 256
BsrBI CCGCTC 2 cut(s) 450, 457
BsrFI RCCGGY 1 cut(s) 366
BsrI ACTGG 1 cut(s) 66
BssAI RCCGGY 1 cut(s) 366
BssECI CCNNGG 2 cut(s) 54, 576
BssMI GATC 2 cut(s) 271, 477
BssT1I CCWWGG 2 cut(s) 54, 576
Bst2UI CCWGG 1 cut(s) 548
Bst4CI ACNGT 1 cut(s) 392
Bst6I CTCTTC 1 cut(s) 256
BstAPI GCANNNNNTGC 1 cut(s) 11
BstDEI CTNAG 2 cut(s) 287, 335
BstDSI CCRYGG 1 cut(s) 54
BstF5I GGATG 1 cut(s) 153
BstKTI GATC 2 cut(s) 274, 480
BstMAI GTCTC 1 cut(s) 497
BstMBI GATC 2 cut(s) 271, 477
BstMWI GCNNNNNNNGC 2 cut(s) 11, 479
BstNI CCWGG 1 cut(s) 548
BstSCI CCNGG 2 cut(s) 428, 546
BstSFI CTRYAG 1 cut(s) 396
BstV1I GCAGC 1 cut(s) 390
BstV2I GAAGAC 1 cut(s) 426
BstX2I RGATCY 1 cut(s) 271
BstXI CCANNNNNNTGG 1 cut(s) 61
BstYI RGATCY 1 cut(s) 271
BsuRI GGCC 2 cut(s) 421, 575
BtgI CCRYGG 1 cut(s) 54
BtsCI GGATG 1 cut(s) 153
Cfr10I RCCGGY 1 cut(s) 366
CsiI ACCWGGT 1 cut(s) 546
Csp6I GTAC 4 cut(s) 59, 83, 284, 393
CviAII CATG 1 cut(s) 55
CviQI GTAC 4 cut(s) 59, 83, 284, 393
DdeI CTNAG 2 cut(s) 287, 335
DpnI GATC 2 cut(s) 273, 479
DpnII GATC 2 cut(s) 271, 477
Eam1104I CTCTTC 1 cut(s) 256
EarI CTCTTC 1 cut(s) 256
Ecl136II GAGCTC 1 cut(s) 153
Eco130I CCWWGG 2 cut(s) 54, 576
Eco24I GRGCYC 1 cut(s) 155
Eco53kI GAGCTC 1 cut(s) 153
EcoICRI GAGCTC 1 cut(s) 153
EcoRII CCWGG 1 cut(s) 546
EcoT14I CCWWGG 2 cut(s) 54, 576
EcoT38I GRGCYC 1 cut(s) 155
ErhI CCWWGG 2 cut(s) 54, 576
FaeI CATG 1 cut(s) 58
FaiI YATR 8 cut(s) 12, 18, 56, 97, 99, 135, 173, 341
FalI AAGNNNNNCTT 2 cut(s) 238, 270
FaqI GGGAC 1 cut(s) 324
FatI CATG 1 cut(s) 54
FauI CCCGC 1 cut(s) 455
Fnu4HI GCNGC 1 cut(s) 404
FokI GGATG 1 cut(s) 160
FriOI GRGCYC 1 cut(s) 155
Fsp4HI GCNGC 1 cut(s) 404
FspBI CTAG 3 cut(s) 68, 417, 470
GluI GCNGC 1 cut(s) 404
GsaI CCCAGC 2 cut(s) 310, 321
HaeIII GGCC 2 cut(s) 421, 575
HapII CCGG 3 cut(s) 352, 367, 429
Hin1II CATG 1 cut(s) 58
HinfI GANTC 1 cut(s) 109
HpaII CCGG 3 cut(s) 352, 367, 429
HphI GGTGA 6 cut(s) 17, 81, 356, 364, 444, 451
Hpy188I TCNGA 1 cut(s) 336
HpyAV CCTTC 2 cut(s) 285, 448
HpyCH4III ACNGT 1 cut(s) 392
HpyCH4V TGCA 3 cut(s) 20, 77, 398
HpyF10VI GCNNNNNNNGC 2 cut(s) 11, 479
HpyF3I CTNAG 2 cut(s) 287, 335
Hsp92II CATG 1 cut(s) 58
Kzo9I GATC 2 cut(s) 271, 477
LguI GCTCTTC 1 cut(s) 256
Lsp1109I GCAGC 1 cut(s) 390
MabI ACCWGGT 1 cut(s) 546
MaeI CTAG 3 cut(s) 68, 417, 470
MaeIII GTNAC 1 cut(s) 103
MalI GATC 2 cut(s) 273, 479
MbiI CCGCTC 2 cut(s) 450, 457
MboI GATC 2 cut(s) 271, 477
MboII GAAGA 7 cut(s) 158, 210, 222, 243, 426, 433, 561
MfeI CAATTG 1 cut(s) 78
MflI RGATCY 1 cut(s) 271
MhlI GDGCHC 1 cut(s) 155
MluCI AATT 6 cut(s) 78, 189, 223, 291, 423, 564
MlyI GAGTC 1 cut(s) 118
MmeI TCCRAC 1 cut(s) 369
MnlI CCTC 5 cut(s) 220, 274, 372, 385, 524
MroXI GAANNNNTTC 1 cut(s) 250
MseI TTAA 2 cut(s) 201, 410
MspI CCGG 3 cut(s) 352, 367, 429
MspR9I CCNGG 2 cut(s) 430, 548
MunI CAATTG 1 cut(s) 78
MvaI CCWGG 1 cut(s) 548
MwoI GCNNNNNNNGC 2 cut(s) 11, 479
NciI CCSGG 1 cut(s) 430
NcoI CCATGG 1 cut(s) 54
NdeII GATC 2 cut(s) 271, 477
NlaIII CATG 1 cut(s) 58
NlaIV GGNNCC 1 cut(s) 273
NmuCI GTSAC 1 cut(s) 103
PciSI GCTCTTC 1 cut(s) 256
PdmI GAANNNNTTC 1 cut(s) 250
PkrI GCNGC 1 cut(s) 405
PleI GAGTC 1 cut(s) 117
PpsI GAGTC 1 cut(s) 117
Psp124BI GAGCTC 1 cut(s) 155
Psp6I CCWGG 1 cut(s) 546
PspFI CCCAGC 2 cut(s) 306, 317
PspGI CCWGG 1 cut(s) 546
PspN4I GGNNCC 1 cut(s) 273
PstI CTGCAG 1 cut(s) 400
PsuI RGATCY 1 cut(s) 271
RsaI GTAC 4 cut(s) 60, 84, 285, 394
RsaNI GTAC 4 cut(s) 59, 83, 284, 393
SacI GAGCTC 1 cut(s) 155
SapI GCTCTTC 1 cut(s) 256
SaqAI TTAA 2 cut(s) 201, 410
SatI GCNGC 1 cut(s) 404
Sau3AI GATC 2 cut(s) 271, 477
SchI GAGTC 1 cut(s) 118
ScrFI CCNGG 2 cut(s) 430, 548
SduI GDGCHC 1 cut(s) 155
SexAI ACCWGGT 1 cut(s) 546
SfcI CTRYAG 1 cut(s) 396
Sse9I AATT 6 cut(s) 78, 189, 223, 291, 423, 564
SsiI CCGC 4 cut(s) 269, 406, 448, 455
SspMI CTAG 3 cut(s) 68, 417, 470
SstI GAGCTC 1 cut(s) 155
StyD4I CCNGG 2 cut(s) 428, 546
StyI CCWWGG 2 cut(s) 54, 576
TaaI ACNGT 1 cut(s) 392
TaqI TCGA 2 cut(s) 112, 236
TasI AATT 6 cut(s) 78, 189, 223, 291, 423, 564
TatI WGTACW 1 cut(s) 82
Tru1I TTAA 2 cut(s) 201, 410
Tru9I TTAA 2 cut(s) 201, 410
TseFI GTSAC 1 cut(s) 103
TseI GCWGC 1 cut(s) 403
Tsp45I GTSAC 1 cut(s) 103
TspDTI ATGAA 3 cut(s) 150, 216, 222
XmnI GAANNNNTTC 1 cut(s) 250
XspI CTAG 3 cut(s) 68, 417, 470
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.