Rorug02G0392900

Transcription initiation factor TFIID subunit

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000002
OG0012450
Physical Location & Seq
Reverse (-)
50349354 .. 50353103
3750 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug02G0392900.1

Sequence Viewer

Length: 1314 bp
ATGGCGGATTCGGAAAATGCCCTTCCACCTTCTAAGAAACGGGCTGCTGGAAGGGAACTCTCTCGTGATAACCCAGGCCTTGATGATGAGGAGGATAGTTCTGAACTAGAGACTGGAACTTTCAAGAGGGCCAGTGAAGAAGTGCTAGCAACAAGAAAGATTGTTAAGGTTCGTCGCCCTCCGACAAGTTCAGGTCCTTCTTCCAACCCTTTTGCTGGGATACGCTTGGTTCCTCCATCTGAAGCTAGTGCAGACCCTTCTCAAGCCGCCACTGATGTACGACCTGCCAGTGAAGCAAAAGTTTCAGATGATGCTAATCAGCAGTCAGATAGCAAGCCTGAATCTGCTGCAGATAAGGAGAGTGATGTGAAGGAGGAAGACAAAATTCCCAGTGAGGCAACAGAGCCTGGGGTAGCACATGACCAGACTGAGGCTGAATCTGCTGAAGATAAGGAGAACATCGTGAAGGAGAACAGCAATATTTCCAGTGAACCAGCTGTTGGAGAAGATAAGACTAAAAATGATGGTGAGGCTGAAAACGAGGTAAAGACTGTAACTGATGGTGAGACTGGAAATGCTGAGAAAAGTGAAAATGAAGAGAAGAGAGAGAAGAAAGATGAAACTGTCGACCCATGTACTGAAGGTGCCACTTTGAACTCATTTCAGCAGCTTTCGAGTAGCCAAAATGCCTTCACAAATCTTTCTGGAACTGGGTTTTCCACTTCCACCTTTTCTTTTGGGCTTATTTCCAAGGATGGTTCTTCGTTGAGTACCGGCACTGGTTCACTTTTTGGGTCAAAAAATGATCTGCCTTCTGGTCTTGGTCTATCTAATAATGGAAGTTCTTCACTCTTTGCCACAGCAGGGCCTTCAATTGTGTCTAGGAGTGACACCCCTTCAATGCAAGAGGTTGCAGTTGAGACTGGAGAAGAAAATGAGAAAGCAGTTTTCACTGCTGATGCGGTGCTGTTTGAATTTATTGATGGAGGCTGGAAAGAGCGTGGAAAGGGAGATCTGAAGGTAAATGTTTCTGAATCTGGTGCTGACAAAGCCAGACTAGTTATGAGAGCCAAGGGAATTAGGAAGGTAATTTTGAATGCAAGTCTTTACCCAGACATGAAGCTTGCAAATATGGAGAAGAAAGGCGTAACGTTTGCCTGCATGAATAGTATCGATGAAAAGAAGGATGGGTTATCCACATTTGCGTTGAAGTTCAAGGATGGGTCCATAGTTGAGGAATTTCGCTCTGCTGTTACAGAACACAAAGGCAAGACAGCTACCGCTATGAAGACTCCTGAAAACTCCCCCAAATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000123 GO:0000124 GO:0000428 GO:0001067 GO:0001101 GO:0003674 GO:0003676 GO:0003677 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005667 GO:0005669 GO:0006139 GO:0006325 GO:0006351 GO:0006355 GO:0006357 GO:0006366 GO:0006464 GO:0006473 GO:0006475 GO:0006725 GO:0006807 GO:0006996 GO:0007584 GO:0008134 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009605 GO:0009889 GO:0009891 GO:0009893 GO:0009987 GO:0009991 GO:0010033 GO:0010243 GO:0010467 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0010628 GO:0016043 GO:0016070 GO:0016569 GO:0016570 GO:0016573 GO:0016591 GO:0018130 GO:0018193 GO:0018205 GO:0018393 GO:0018394 GO:0019219 GO:0019222 GO:0019438 GO:0019538 GO:0030880 GO:0031248 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0031667 GO:0031974 GO:0031981 GO:0032774 GO:0032991 GO:0034641 GO:0034645 GO:0034654 GO:0034708 GO:0035097 GO:0036211 GO:0042221 GO:0042493 GO:0043170 GO:0043200 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0043412 GO:0043543 GO:0043966 GO:0044212 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044271 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044451 GO:0044464 GO:0044665 GO:0044798 GO:0045893 GO:0045935 GO:0045944 GO:0046483 GO:0048518 GO:0048522 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051173 GO:0051252 GO:0051254 GO:0051276 GO:0055029 GO:0060255 GO:0061695 GO:0065007 GO:0070013 GO:0070461 GO:0071339 GO:0071704 GO:0071840 GO:0080090 GO:0090304 GO:0090575 GO:0097159 GO:0097659 GO:1901360 GO:1901362 GO:1901363 GO:1901564 GO:1901576 GO:1901698 GO:1901700 GO:1902065 GO:1902493 GO:1902494 GO:1902680 GO:1903506 GO:1903508 GO:1905368 GO:1990234 GO:2000112 GO:2001141
KEGG Pathways
Metabolic & Signaling
ko03022 ko05168 map03022 map05168
Pfam Domains
Protein Families
TFIID-31kDa

Protein Analysis

437

Amino Acids

46.43

Weight (kDa)

4.73

Isoelectric Point (pI)

43.51

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
NUP50 PF08911 12 - 74 2.4e-16 NUP50 (Nucleoporin 50 kDa)
Ran_BP1 PF00638 306 - 422 7.8e-20 RanBP1 domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0012450)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G54140
fragaria_vesca FvH4_6g34870 FvH4_6g34870
malus_domestica MD09G1181700.v1.1
prunus_persica Prupe.3G039800_v2.0.a1
pyrus_communis pycom09g09940
rosa_chinensis RchiOBHm_Chr2g0145741
rosa_laevigata RLG00000010130 RLG00000020165
rosa_multiflora Rmu_sc0000473.1_g000008
rosa_roxburghii Rroxscaffold_152G00434720 Rroxscaffold_2G00100480
rosa_rugosa Rorug02G0392900 Rorug02G0393000
rosa_samantha Rh2AG447300 Rh2BG459600 Rh2CG434300 Rh2DG469100
rosa_wichuraiana Rw2G036550

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 292
AccB1I GGYRCC 1 cut(s) 644
AccB7I CCANNNNNTGG 1 cut(s) 500
AccI GTMKAC 1 cut(s) 627
AciI CCGC 4 cut(s) 5, 267, 962, 1281
AclI AACGTT 1 cut(s) 1151
AcsI RAATTY 3 cut(s) 384, 974, 1238
AcuI CTGAAG 4 cut(s) 261, 465, 660, 1037
AfaI GTAC 3 cut(s) 279, 637, 772
AfiI CCNNNNNNNGG 4 cut(s) 215, 430, 500, 864
AgsI TTSAA 8 cut(s) 124, 655, 873, 900, 974, 1096, 1210, 1216
AhlI ACTAGT 1 cut(s) 1057
AjnI CCWGG 2 cut(s) 73, 406
AjuI GAANNNNNNNTTGG 2 cut(s) 483, 515
AluBI AGCT 5 cut(s) 245, 497, 670, 1123, 1277
AluI AGCT 5 cut(s) 245, 497, 670, 1123, 1277
Alw26I GTCTC 3 cut(s) 104, 560, 914
AlwNI CAGNNNCTG 1 cut(s) 407
AoxI GGCC 3 cut(s) 76, 129, 866
ApeKI GCWGC 3 cut(s) 44, 347, 667
ApoI RAATTY 3 cut(s) 384, 974, 1238
Asp700I GAANNNNTTC 1 cut(s) 844
AspS9I GGNCC 4 cut(s) 129, 194, 866, 1224
AsuHPI GGTGA 2 cut(s) 539, 575
AsuNHI GCTAGC 1 cut(s) 145
AvaII GGWCC 2 cut(s) 194, 1224
BanI GGYRCC 1 cut(s) 644
BauI CACGAG 1 cut(s) 63
BbsI GAAGAC 2 cut(s) 384, 1295
BbvI GCAGC 3 cut(s) 31, 334, 679
BccI CCATC 7 cut(s) 244, 518, 554, 749, 977, 1181, 1214
BciT130I CCWGG 2 cut(s) 75, 408
BciVI GTATCC 1 cut(s) 213
BcoDI GTCTC 3 cut(s) 104, 560, 914
BcuI ACTAGT 1 cut(s) 1057
BfaI CTAG 5 cut(s) 107, 146, 246, 882, 1058
BfmI CTRYAG 1 cut(s) 348
BfuAI ACCTGC 1 cut(s) 292
BfuI GTATCC 1 cut(s) 213
BglII AGATCT 1 cut(s) 1012
BisI GCNGC 4 cut(s) 45, 267, 348, 668
BlsI GCNGC 4 cut(s) 46, 268, 349, 669
Bme1390I CCNGG 2 cut(s) 75, 408
Bme18I GGWCC 2 cut(s) 194, 1224
BmgT120I GGNCC 4 cut(s) 129, 194, 866, 1224
BmiI GGNNCC 3 cut(s) 231, 646, 1225
BmrFI CCNGG 2 cut(s) 75, 408
BmrI ACTGGG 2 cut(s) 384, 720
BmsI GCATC 2 cut(s) 301, 949
BmtI GCTAGC 1 cut(s) 149
BmuI ACTGGG 2 cut(s) 384, 720
BpiI GAAGAC 2 cut(s) 384, 1295
BpmI CTGGAG 1 cut(s) 945
BpuEI CTTGAG 1 cut(s) 246
Bsa29I ATCGAT 1 cut(s) 1173
BsaBI GATNNNNATC 1 cut(s) 315
BsaJI CCNNGG 4 cut(s) 73, 407, 750, 1071
Bsc4I CCNNNNNNNGG 4 cut(s) 215, 430, 500, 864
Bse118I RCCGGY 1 cut(s) 773
Bse1I ACTGG 9 cut(s) 118, 132, 288, 390, 486, 574, 715, 784, 928
Bse8I GATNNNNATC 1 cut(s) 315
BseBI CCWGG 2 cut(s) 75, 408
BseCI ATCGAT 1 cut(s) 1173
BseDI CCNNGG 4 cut(s) 73, 407, 750, 1071
BseGI GGATG 3 cut(s) 760, 1192, 1225
BseJI GATNNNNATC 1 cut(s) 315
BseLI CCNNNNNNNGG 4 cut(s) 215, 430, 500, 864
BseMII CTCAG 2 cut(s) 420, 570
BseNI ACTGG 9 cut(s) 118, 132, 288, 390, 486, 574, 715, 784, 928
BseRI GAGGAG 1 cut(s) 104
BseXI GCAGC 3 cut(s) 31, 334, 679
BseYI CCCAGC 1 cut(s) 215
BsgI GTGCAG 1 cut(s) 270
BshFI GGCC 3 cut(s) 78, 131, 868
BshNI GGYRCC 1 cut(s) 644
BshVI ATCGAT 1 cut(s) 1173
BsiSI CCGG 1 cut(s) 774
BslI CCNNNNNNNGG 4 cut(s) 215, 430, 500, 864
BsmAI GTCTC 3 cut(s) 104, 560, 914
BsmI GAATGC 1 cut(s) 1102
BsnI GGCC 3 cut(s) 78, 131, 868
Bsp143I GATC 2 cut(s) 805, 1012
BspACI CCGC 4 cut(s) 5, 267, 962, 1281
BspANI GGCC 3 cut(s) 78, 131, 868
BspCNI CTCAG 2 cut(s) 421, 571
BspDI ATCGAT 1 cut(s) 1173
BspLI GGNNCC 3 cut(s) 231, 646, 1225
BspMAI CTGCAG 1 cut(s) 352
BspMI ACCTGC 1 cut(s) 292
BspOI GCTAGC 1 cut(s) 149
BspT107I GGYRCC 1 cut(s) 644
BsrFI RCCGGY 1 cut(s) 773
BsrI ACTGG 9 cut(s) 118, 132, 288, 390, 486, 574, 715, 784, 928
BssAI RCCGGY 1 cut(s) 773
BssECI CCNNGG 4 cut(s) 73, 407, 750, 1071
BssMI GATC 2 cut(s) 805, 1012
BssSI CACGAG 1 cut(s) 63
BssT1I CCWWGG 2 cut(s) 750, 1071
Bst2BI CACGAG 1 cut(s) 63
Bst2UI CCWGG 2 cut(s) 75, 408
Bst4CI ACNGT 2 cut(s) 553, 625
Bst6I CTCTTC 2 cut(s) 591, 596
BstC8I GCNNGC 4 cut(s) 147, 335, 1125, 1159
BstDEI CTNAG 3 cut(s) 33, 429, 579
BstF5I GGATG 3 cut(s) 760, 1192, 1225
BstKTI GATC 2 cut(s) 808, 1015
BstMAI GTCTC 3 cut(s) 104, 560, 914
BstMBI GATC 2 cut(s) 805, 1012
BstMWI GCNNNNNNNGC 3 cut(s) 293, 440, 1049
BstNI CCWGG 2 cut(s) 75, 408
BstSCI CCNGG 2 cut(s) 73, 406
BstSFI CTRYAG 1 cut(s) 348
BstV1I GCAGC 3 cut(s) 31, 334, 679
BstV2I GAAGAC 2 cut(s) 384, 1295
BstX2I RGATCY 1 cut(s) 1012
BstYI RGATCY 1 cut(s) 1012
Bsu15I ATCGAT 1 cut(s) 1173
BsuI GTATCC 1 cut(s) 213
BsuRI GGCC 3 cut(s) 78, 131, 868
BsuTUI ATCGAT 1 cut(s) 1173
BtsCI GGATG 3 cut(s) 760, 1192, 1225
BtsI GCAGTG 1 cut(s) 951
BtsIMutI CAGTG 7 cut(s) 139, 270, 295, 397, 493, 777, 951
BveI ACCTGC 1 cut(s) 292
Cac8I GCNNGC 4 cut(s) 147, 335, 1125, 1159
CaiI CAGNNNCTG 1 cut(s) 407
Cfr10I RCCGGY 1 cut(s) 773
Cfr13I GGNCC 4 cut(s) 129, 194, 866, 1224
ClaI ATCGAT 1 cut(s) 1173
Csp6I GTAC 3 cut(s) 278, 636, 771
CviAII CATG 4 cut(s) 419, 633, 1117, 1162
CviQI GTAC 3 cut(s) 278, 636, 771
DdeI CTNAG 3 cut(s) 33, 429, 579
DpnI GATC 2 cut(s) 807, 1014
DpnII GATC 2 cut(s) 805, 1012
Eam1104I CTCTTC 2 cut(s) 591, 596
EarI CTCTTC 2 cut(s) 591, 596
EciI GGCGGA 1 cut(s) 20
Eco130I CCWWGG 2 cut(s) 750, 1071
Eco147I AGGCCT 1 cut(s) 78
Eco47I GGWCC 2 cut(s) 194, 1224
Eco57I CTGAAG 4 cut(s) 261, 465, 660, 1037
EcoO109I RGGNCCY 2 cut(s) 194, 866
EcoRII CCWGG 2 cut(s) 73, 406
EcoT14I CCWWGG 2 cut(s) 750, 1071
ErhI CCWWGG 2 cut(s) 750, 1071
FaeI CATG 4 cut(s) 422, 636, 1120, 1165
FaiI YATR 8 cut(s) 420, 634, 1064, 1118, 1133, 1163, 1229, 1286
FatI CATG 4 cut(s) 418, 632, 1116, 1161
FblI GTMKAC 1 cut(s) 627
Fnu4HI GCNGC 4 cut(s) 45, 267, 348, 668
FokI GGATG 3 cut(s) 767, 1199, 1232
Fsp4HI GCNGC 4 cut(s) 45, 267, 348, 668
FspBI CTAG 5 cut(s) 107, 146, 246, 882, 1058
GluI GCNGC 4 cut(s) 45, 267, 348, 668
GsaI CCCAGC 1 cut(s) 219
GsuI CTGGAG 1 cut(s) 945
HaeIII GGCC 3 cut(s) 78, 131, 868
HapII CCGG 1 cut(s) 774
Hin1II CATG 4 cut(s) 422, 636, 1120, 1165
HincII GTYRAC 1 cut(s) 628
HindII GTYRAC 1 cut(s) 628
HindIII AAGCTT 1 cut(s) 1121
HinfI GANTC 5 cut(s) 8, 341, 437, 1034, 1291
HpaII CCGG 1 cut(s) 774
HphI GGTGA 2 cut(s) 539, 575
Hpy166II GTNNAC 3 cut(s) 491, 628, 785
Hpy188I TCNGA 8 cut(s) 13, 103, 183, 241, 307, 328, 1017, 1033
Hpy188III TCNNGA 5 cut(s) 65, 124, 463, 705, 1295
Hpy8I GTNNAC 3 cut(s) 491, 628, 785
Hpy99I CGWCG 1 cut(s) 177
HpyCH4III ACNGT 2 cut(s) 553, 625
HpyCH4IV ACGT 1 cut(s) 1151
HpyCH4V TGCA 7 cut(s) 251, 350, 904, 914, 1100, 1127, 1161
HpyF10VI GCNNNNNNNGC 3 cut(s) 293, 440, 1049
HpyF3I CTNAG 3 cut(s) 33, 429, 579
HpySE526I ACGT 1 cut(s) 1151
Hsp92II CATG 4 cut(s) 422, 636, 1120, 1165
Kzo9I GATC 2 cut(s) 805, 1012
Lsp1109I GCAGC 3 cut(s) 31, 334, 679
LweI GCATC 2 cut(s) 301, 949
MaeI CTAG 5 cut(s) 107, 146, 246, 882, 1058
MaeII ACGT 1 cut(s) 1151
MaeIII GTNAC 4 cut(s) 553, 887, 1147, 1252
MalI GATC 2 cut(s) 807, 1014
MboI GATC 2 cut(s) 805, 1012
MfeI CAATTG 1 cut(s) 873
MflI RGATCY 1 cut(s) 1012
MluCI AATT 6 cut(s) 384, 873, 974, 1077, 1089, 1238
MlyI GAGTC 1 cut(s) 1285
MmeI TCCRAC 3 cut(s) 206, 228, 481
MroXI GAANNNNTTC 1 cut(s) 844
MseI TTAA 1 cut(s) 165
MspA1I CMGCKG 1 cut(s) 497
MspI CCGG 1 cut(s) 774
MspR9I CCNGG 2 cut(s) 75, 408
MunI CAATTG 1 cut(s) 873
Mva1269I GAATGC 1 cut(s) 1102
MvaI CCWGG 2 cut(s) 75, 408
MwoI GCNNNNNNNGC 3 cut(s) 293, 440, 1049
NdeII GATC 2 cut(s) 805, 1012
NheI GCTAGC 1 cut(s) 145
NlaIII CATG 4 cut(s) 422, 636, 1120, 1165
NlaIV GGNNCC 3 cut(s) 231, 646, 1225
NmuCI GTSAC 1 cut(s) 887
PceI AGGCCT 1 cut(s) 78
PctI GAATGC 1 cut(s) 1102
PdmI GAANNNNTTC 1 cut(s) 844
PfeI GAWTC 4 cut(s) 8, 341, 437, 1034
PflMI CCANNNNNTGG 1 cut(s) 500
PkrI GCNGC 4 cut(s) 46, 268, 349, 669
PleI GAGTC 1 cut(s) 1285
PpsI GAGTC 1 cut(s) 1285
PpuMI RGGWCCY 1 cut(s) 194
Psp1406I AACGTT 1 cut(s) 1151
Psp5II RGGWCCY 1 cut(s) 194
Psp6I CCWGG 2 cut(s) 73, 406
PspFI CCCAGC 1 cut(s) 215
PspGI CCWGG 2 cut(s) 73, 406
PspN4I GGNNCC 3 cut(s) 231, 646, 1225
PspPI GGNCC 4 cut(s) 129, 194, 866, 1224
PspPPI RGGWCCY 1 cut(s) 194
PstI CTGCAG 1 cut(s) 352
PstNI CAGNNNCTG 1 cut(s) 407
PsuI RGATCY 1 cut(s) 1012
PvuII CAGCTG 1 cut(s) 497
RsaI GTAC 3 cut(s) 279, 637, 772
RsaNI GTAC 3 cut(s) 278, 636, 771
SalI GTCGAC 1 cut(s) 626
SaqAI TTAA 1 cut(s) 165
SatI GCNGC 4 cut(s) 45, 267, 348, 668
Sau3AI GATC 2 cut(s) 805, 1012
Sau96I GGNCC 4 cut(s) 129, 194, 866, 1224
SchI GAGTC 1 cut(s) 1285
ScrFI CCNGG 2 cut(s) 75, 408
SfaNI GCATC 2 cut(s) 301, 949
SfcI CTRYAG 1 cut(s) 348
SinI GGWCC 2 cut(s) 194, 1224
SmlI CTYRAG 1 cut(s) 261
SmoI CTYRAG 1 cut(s) 261
SpeI ACTAGT 1 cut(s) 1057
Sse9I AATT 6 cut(s) 384, 873, 974, 1077, 1089, 1238
SseBI AGGCCT 1 cut(s) 78
SsiI CCGC 4 cut(s) 5, 267, 962, 1281
SspI AATATT 1 cut(s) 481
SspMI CTAG 5 cut(s) 107, 146, 246, 882, 1058
StuI AGGCCT 1 cut(s) 78
StyD4I CCNGG 2 cut(s) 73, 406
StyI CCWWGG 2 cut(s) 750, 1071
TaaI ACNGT 2 cut(s) 553, 625
TaiI ACGT 1 cut(s) 1154
TaqI TCGA 3 cut(s) 627, 674, 1173
TasI AATT 6 cut(s) 384, 873, 974, 1077, 1089, 1238
TatI WGTACW 1 cut(s) 635
TauI GCSGC 1 cut(s) 269
TfiI GAWTC 4 cut(s) 8, 341, 437, 1034
Tru1I TTAA 1 cut(s) 165
Tru9I TTAA 1 cut(s) 165
TscAI CASTG 7 cut(s) 139, 277, 295, 397, 493, 784, 958
TseFI GTSAC 1 cut(s) 887
TseI GCWGC 3 cut(s) 44, 347, 667
Tsp45I GTSAC 1 cut(s) 887
TspDTI ATGAA 6 cut(s) 609, 633, 1133, 1178, 1191, 1301
TspRI CASTG 7 cut(s) 139, 277, 295, 397, 493, 784, 958
Van91I CCANNNNNTGG 1 cut(s) 500
VpaK11BI GGWCC 2 cut(s) 194, 1224
XapI RAATTY 3 cut(s) 384, 974, 1238
XmiI GTMKAC 1 cut(s) 627
XmnI GAANNNNTTC 1 cut(s) 844
XspI CTAG 5 cut(s) 107, 146, 246, 882, 1058
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.