Rorug02G0393000

Transcription initiation factor TFIID subunit

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000002
OG0012450
Physical Location & Seq
Reverse (-)
50356992 .. 50360750
3759 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug02G0393000.1

Sequence Viewer

Length: 1620 bp
ATGTGGGTGCAGCGTGCAAAACCGTTTAGGCAGATAAAGGCCTTTAGTCAGTCTTTTAAGTCTCCATGGATTTTTTCGATATCGTCTTCCTACTCAGATACTCCTCACAAGAAGTCGAAGCTTGCCCCTCTACAGGAAAGGAAAATGATAGATAGGTTTAGGCTATATGCTAAAGGGGGAGGTGGTGGCAGTGGTTGCTCCAGCTCTCGCCGTAGTCGCCATGATCGCCATGGCATACCTGATGGTGGGAATGGTGGAAGAGGTGGTGATGTGATTCTGGAATGTTCTCCAACAGTTTGGGACTTCAGTGGTTTGCAACCTCACCTTATAGCACAGAGAGGGGGACATGGATCCTCGAAGAATAAAATTGGCACTCGAGGAGCAGATAAGGTTGCGCAAGTGCCCATTGGTACAGTGATTCATCTTATGAAGGGTGAAATTCCTTTTGTTGCTGAAAGCCATGTTTCTAAAGATTTGGACCCATGGGAGCTTCCAGGTACTCCTATTGATGATGTAACGGGCTCTGACCAGCAGTCTGCCCCTAGTGGTCCAAATATGGCAGTGGATACTGGTAGCTCATCATCTCGACCTGAAAGAATTGATGAGGAATCAACTCAAATGAAGGAAACCACCCAAGTTGAATCCACTGAGGTTCCTACTAAATCTCCACCTTCTTCCTCTGAGATTTGCACAGAAGATGAGGCAGAGGAAGAAGAACAAATTCAATACAACGTTGCTGAGTTAACAGTAAGAGGTCAACGATTAGTTATTGCTCGTGGAGCGGAAGGTGGTCTAGGTAGCGTGTCTCTCAAAGTCCCAAAGAAGTTCAAAACTGATTCGTTAGATGCTCAGGTATCTAATGATCAGTTGACTGTCAGTGCTGGTTTGCCTGGTTCTGAAGCTGTTCTCATATTAGAACTAAAGAGCATTGCCGATGTGAGCCTAGTGGGAATGCCAATTGCTGGTAAAAGTACTCTATTAGGGGCTGTATCTAGGGCTAAGCCTGCAGTGGGCCATTACGCCTTCACCACTCTTAGACCCAATTTGGGGAACCTAAACTTTGATGACTTTTCACTCACAGTTGCTGATGTTCCGGGACTCATAAAGGGTGCCCACGAGAATCGTGGACTTGGACATGCATTCCTCCGCCACATAGAACGCACAAAGGTTATAGCTTATGTGGTGGACTTGGCTGCTGGATTGGATGGACGAAAAGGAACCCCACCTTGGGAACAGCTTAGGGATTTGGTTTTAGAGCTCGAGTACCATCAAGTAGGTTTATCTGATCGACCATCACTCATAGTGGCAAATAAAATAGATGAGGAAGGGACTGAAGGCGTGCATGAAGAACTGAAAATAAGGGTACAGCATGTTCCTATATTCCCTGTCTGTGCCATTTTGGGGGAAGGAGTTCAAGAGCTAAAAATTGGTCTTAGGAGACTTGTGAATGGTGAAATGACAGACAGACTCCAGGTTAATCCAAATGCTGCTGAGTCTTTGGCTGATCCTGAAGAGAACTTGCAAGTGGATGCAGAGAACTTGCAAATGGATGAAGAGCAGCCCCGTGAAAATGGAGACTCAATGCATGAGGTCTCTTGCAAGAGGCTGACAAAGGGGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000123 GO:0000124 GO:0000428 GO:0001067 GO:0001101 GO:0003674 GO:0003676 GO:0003677 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005667 GO:0005669 GO:0006139 GO:0006325 GO:0006351 GO:0006355 GO:0006357 GO:0006366 GO:0006464 GO:0006473 GO:0006475 GO:0006725 GO:0006807 GO:0006996 GO:0007584 GO:0008134 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009605 GO:0009889 GO:0009891 GO:0009893 GO:0009987 GO:0009991 GO:0010033 GO:0010243 GO:0010467 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0010628 GO:0016043 GO:0016070 GO:0016569 GO:0016570 GO:0016573 GO:0016591 GO:0018130 GO:0018193 GO:0018205 GO:0018393 GO:0018394 GO:0019219 GO:0019222 GO:0019438 GO:0019538 GO:0030880 GO:0031248 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0031667 GO:0031974 GO:0031981 GO:0032774 GO:0032991 GO:0034641 GO:0034645 GO:0034654 GO:0034708 GO:0035097 GO:0036211 GO:0042221 GO:0042493 GO:0043170 GO:0043200 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0043412 GO:0043543 GO:0043966 GO:0044212 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044271 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044451 GO:0044464 GO:0044665 GO:0044798 GO:0045893 GO:0045935 GO:0045944 GO:0046483 GO:0048518 GO:0048522 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051173 GO:0051252 GO:0051254 GO:0051276 GO:0055029 GO:0060255 GO:0061695 GO:0065007 GO:0070013 GO:0070461 GO:0071339 GO:0071704 GO:0071840 GO:0080090 GO:0090304 GO:0090575 GO:0097159 GO:0097659 GO:1901360 GO:1901362 GO:1901363 GO:1901564 GO:1901576 GO:1901698 GO:1901700 GO:1902065 GO:1902493 GO:1902494 GO:1902680 GO:1903506 GO:1903508 GO:1905368 GO:1990234 GO:2000112 GO:2001141
KEGG Pathways
Metabolic & Signaling
ko03022 ko05168 map03022 map05168
Pfam Domains
Protein Families
TFIID-31kDa

Protein Analysis

539

Amino Acids

58.38

Weight (kDa)

5.62

Isoelectric Point (pI)

48.16

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
GTP1_OBG PF01018 50 - 142 4.4e-24 GTP1/OBG
MMR_HSR1 PF01926 313 - 438 2.7e-20 50S ribosome-binding GTPase
FeoB_N PF02421 313 - 475 1.4e-07 Ferrous iron transport protein B
Arf PF00025 313 - 474 6.3e-06 ADP-ribosylation factor family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0012450)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G54140
fragaria_vesca FvH4_6g34870 FvH4_6g34870
malus_domestica MD09G1181700.v1.1
prunus_persica Prupe.3G039800_v2.0.a1
pyrus_communis pycom09g09940
rosa_chinensis RchiOBHm_Chr2g0145741
rosa_laevigata RLG00000010130 RLG00000020165
rosa_multiflora Rmu_sc0000473.1_g000008
rosa_roxburghii Rroxscaffold_152G00434720 Rroxscaffold_2G00100480
rosa_rugosa Rorug02G0392900 Rorug02G0393000
rosa_samantha Rh2AG447300 Rh2BG459600 Rh2CG434300 Rh2DG469100
rosa_wichuraiana Rw2G036550

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 396
AccB1I GGYRCC 1 cut(s) 1109
AccB7I CCANNNNNTGG 1 cut(s) 962
AccBSI CCGCTC 1 cut(s) 782
AciI CCGC 2 cut(s) 782, 1147
AclI AACGTT 1 cut(s) 732
AclWI GGATC 3 cut(s) 345, 358, 1499
AcsI RAATTY 2 cut(s) 438, 720
AcuI CTGAAG 4 cut(s) 289, 918, 1353, 1530
AfaI GTAC 5 cut(s) 412, 499, 973, 1265, 1365
AfiI CCNNNNNNNGG 9 cut(s) 133, 245, 962, 1010, 1046, 1047, 1227, 1228, 1401
AgsI TTSAA 4 cut(s) 641, 725, 829, 1415
AhdI GACNNNNNGTC 1 cut(s) 532
AjnI CCWGG 3 cut(s) 493, 889, 1470
AjuI GAANNNNNNNTTGG 2 cut(s) 1210, 1242
AluBI AGCT 9 cut(s) 121, 204, 490, 576, 902, 1175, 1237, 1258, 1420
AluI AGCT 9 cut(s) 121, 204, 490, 576, 902, 1175, 1237, 1258, 1420
Alw21I GWGCWC 1 cut(s) 1260
Alw26I GTCTC 5 cut(s) 66, 810, 1432, 1569, 1597
AlwI GGATC 3 cut(s) 345, 358, 1499
AlwNI CAGNNNCTG 1 cut(s) 1085
Ama87I CYCGRG 2 cut(s) 375, 1259
AoxI GGCC 2 cut(s) 39, 1012
ApeKI GCWGC 4 cut(s) 10, 1193, 1487, 1558
ApoI RAATTY 2 cut(s) 438, 720
Asp700I GAANNNNTTC 3 cut(s) 720, 903, 1410
AspLEI GCGC 1 cut(s) 397
AspS9I GGNCC 3 cut(s) 478, 548, 1012
AsuC2I CCSGG 1 cut(s) 1095
AsuHPI GGTGA 5 cut(s) 278, 314, 446, 1018, 1463
AvaI CYCGRG 2 cut(s) 375, 1259
AvaII GGWCC 2 cut(s) 478, 548
BaeGI GKGCMC 2 cut(s) 405, 1114
BamHI GGATCC 1 cut(s) 350
BanI GGYRCC 1 cut(s) 1109
BanII GRGCYC 2 cut(s) 524, 1260
BauI CACGAG 2 cut(s) 774, 1115
BbsI GAAGAC 1 cut(s) 78
Bbv12I GWGCWC 1 cut(s) 1260
BbvI GCAGC 4 cut(s) 22, 1180, 1474, 1570
BccI CCATC 4 cut(s) 236, 1199, 1275, 1300
BceAI ACGGC 1 cut(s) 195
BciT130I CCWGG 3 cut(s) 495, 891, 1472
BciVI GTATCC 1 cut(s) 559
BclI TGATCA 1 cut(s) 862
BcnI CCSGG 1 cut(s) 1095
BcoDI GTCTC 5 cut(s) 66, 810, 1432, 1569, 1597
BfaI CTAG 4 cut(s) 543, 794, 944, 993
BfmI CTRYAG 2 cut(s) 131, 1005
BfuI GTATCC 1 cut(s) 559
BisI GCNGC 4 cut(s) 11, 1194, 1488, 1559
BlpI GCTNAGC 1 cut(s) 999
BlsI GCNGC 4 cut(s) 12, 1195, 1489, 1560
BmcAI AGTACT 1 cut(s) 973
Bme1390I CCNGG 4 cut(s) 495, 891, 1095, 1472
Bme18I GGWCC 2 cut(s) 478, 548
BmeRI GACNNNNNGTC 1 cut(s) 532
BmeT110I CYCGRG 2 cut(s) 375, 1259
BmgT120I GGNCC 3 cut(s) 478, 548, 1012
BmiI GGNNCC 6 cut(s) 352, 480, 654, 1052, 1111, 1219
BmrFI CCNGG 4 cut(s) 495, 891, 1095, 1472
BmsI GCATC 2 cut(s) 835, 1519
BpiI GAAGAC 1 cut(s) 78
BpmI CTGGAG 2 cut(s) 184, 1454
Bpu10I CCTNAGC 2 cut(s) 849, 1238
Bpu1102I GCTNAGC 1 cut(s) 999
BpuMI CCSGG 1 cut(s) 1095
BsaI GGTCTC 1 cut(s) 1597
BsaJI CCNNGG 4 cut(s) 65, 229, 482, 1226
BsaXI ACNNNNNCTCC 2 cut(s) 649, 679
Bsc4I CCNNNNNNNGG 9 cut(s) 133, 245, 962, 1010, 1046, 1047, 1227, 1228, 1401
Bse1I ACTGG 1 cut(s) 574
Bse3DI GCAATG 1 cut(s) 927
BseBI CCWGG 3 cut(s) 495, 891, 1472
BseDI CCNNGG 4 cut(s) 65, 229, 482, 1226
BseGI GGATG 3 cut(s) 1210, 1534, 1555
BseLI CCNNNNNNNGG 9 cut(s) 133, 245, 962, 1010, 1046, 1047, 1227, 1228, 1401
BseMI GCAATG 1 cut(s) 927
BseMII CTCAG 6 cut(s) 108, 639, 672, 729, 863, 1482
BseNI ACTGG 1 cut(s) 574
BseRI GAGGAG 2 cut(s) 93, 393
BseSI GKGCMC 2 cut(s) 405, 1114
BseXI GCAGC 4 cut(s) 22, 1180, 1474, 1570
BsgI GTGCAG 1 cut(s) 29
BshFI GGCC 2 cut(s) 41, 1014
BshNI GGYRCC 1 cut(s) 1109
BsiHKAI GWGCWC 1 cut(s) 1260
BsiHKCI CYCGRG 2 cut(s) 375, 1259
BsiSI CCGG 1 cut(s) 1094
BslFI GGGAC 5 cut(s) 314, 357, 800, 1110, 1342
BslI CCNNNNNNNGG 9 cut(s) 133, 245, 962, 1010, 1046, 1047, 1227, 1228, 1401
BsmAI GTCTC 5 cut(s) 66, 810, 1432, 1569, 1597
BsmFI GGGAC 5 cut(s) 314, 357, 800, 1110, 1342
BsmI GAATGC 2 cut(s) 957, 1139
BsnI GGCC 2 cut(s) 41, 1014
Bso31I GGTCTC 1 cut(s) 1597
BsoBI CYCGRG 2 cut(s) 375, 1259
Bsp1286I GDGCHC 4 cut(s) 405, 524, 1114, 1260
Bsp143I GATC 5 cut(s) 223, 350, 862, 1285, 1504
Bsp1720I GCTNAGC 1 cut(s) 999
Bsp19I CCATGG 3 cut(s) 65, 229, 482
BspACI CCGC 2 cut(s) 782, 1147
BspANI GGCC 2 cut(s) 41, 1014
BspCNI CTCAG 6 cut(s) 107, 640, 673, 730, 862, 1483
BspLI GGNNCC 6 cut(s) 352, 480, 654, 1052, 1111, 1219
BspMAI CTGCAG 1 cut(s) 1009
BspPI GGATC 3 cut(s) 345, 358, 1499
BspQI GCTCTTC 1 cut(s) 1548
BspT107I GGYRCC 1 cut(s) 1109
BspTNI GGTCTC 1 cut(s) 1597
BsrBI CCGCTC 1 cut(s) 782
BsrDI GCAATG 1 cut(s) 927
BsrI ACTGG 1 cut(s) 574
BssECI CCNNGG 4 cut(s) 65, 229, 482, 1226
BssMI GATC 5 cut(s) 223, 350, 862, 1285, 1504
BssSI CACGAG 2 cut(s) 774, 1115
BssT1I CCWWGG 4 cut(s) 65, 229, 482, 1226
Bst2BI CACGAG 2 cut(s) 774, 1115
Bst2UI CCWGG 3 cut(s) 495, 891, 1472
Bst4CI ACNGT 6 cut(s) 24, 295, 415, 748, 874, 1081
Bst6I CTCTTC 3 cut(s) 253, 1506, 1548
BstAPI GCANNNNNTGC 1 cut(s) 195
BstC8I GCNNGC 4 cut(s) 15, 123, 1005, 1340
BstDSI CCRYGG 3 cut(s) 65, 229, 482
BstF5I GGATG 3 cut(s) 1210, 1534, 1555
BstHHI GCGC 1 cut(s) 397
BstKTI GATC 5 cut(s) 226, 353, 865, 1288, 1507
BstMAI GTCTC 5 cut(s) 66, 810, 1432, 1569, 1597
BstMBI GATC 5 cut(s) 223, 350, 862, 1285, 1504
BstMWI GCNNNNNNNGC 5 cut(s) 195, 216, 225, 779, 1004
BstNI CCWGG 3 cut(s) 495, 891, 1472
BstNSI RCATGY 2 cut(s) 1139, 1373
BstSCI CCNGG 4 cut(s) 493, 889, 1093, 1470
BstSFI CTRYAG 2 cut(s) 131, 1005
BstSLI GKGCMC 2 cut(s) 405, 1114
BstV1I GCAGC 4 cut(s) 22, 1180, 1474, 1570
BstV2I GAAGAC 1 cut(s) 78
BstX2I RGATCY 1 cut(s) 350
BstXI CCANNNNNNTGG 1 cut(s) 297
BstYI RGATCY 1 cut(s) 350
BsuI GTATCC 1 cut(s) 559
BsuRI GGCC 2 cut(s) 41, 1014
BtgI CCRYGG 3 cut(s) 65, 229, 482
BtsCI GGATG 3 cut(s) 1210, 1534, 1555
BtsI GCAGTG 3 cut(s) 196, 567, 1014
BtsIMutI CAGTG 7 cut(s) 196, 313, 420, 567, 645, 883, 1014
Cac8I GCNNGC 4 cut(s) 15, 123, 1005, 1340
CaiI CAGNNNCTG 1 cut(s) 1085
CfoI GCGC 1 cut(s) 397
Cfr13I GGNCC 3 cut(s) 478, 548, 1012
Csp6I GTAC 5 cut(s) 411, 498, 972, 1264, 1364
CspCI CAANNNNNGTGG 2 cut(s) 619, 654
CviQI GTAC 5 cut(s) 411, 498, 972, 1264, 1364
DpnI GATC 5 cut(s) 225, 352, 864, 1287, 1506
DpnII GATC 5 cut(s) 223, 350, 862, 1285, 1504
DriI GACNNNNNGTC 1 cut(s) 532
Eam1104I CTCTTC 3 cut(s) 253, 1506, 1548
Eam1105I GACNNNNNGTC 1 cut(s) 532
EarI CTCTTC 3 cut(s) 253, 1506, 1548
EciI GGCGGA 1 cut(s) 1136
Ecl136II GAGCTC 1 cut(s) 1258
Eco130I CCWWGG 4 cut(s) 65, 229, 482, 1226
Eco147I AGGCCT 1 cut(s) 41
Eco24I GRGCYC 2 cut(s) 524, 1260
Eco31I GGTCTC 1 cut(s) 1597
Eco32I GATATC 1 cut(s) 81
Eco47I GGWCC 2 cut(s) 478, 548
Eco53kI GAGCTC 1 cut(s) 1258
Eco57I CTGAAG 4 cut(s) 289, 918, 1353, 1530
Eco88I CYCGRG 2 cut(s) 375, 1259
EcoICRI GAGCTC 1 cut(s) 1258
EcoRII CCWGG 3 cut(s) 493, 889, 1470
EcoRV GATATC 1 cut(s) 81
EcoT14I CCWWGG 4 cut(s) 65, 229, 482, 1226
EcoT22I ATGCAT 2 cut(s) 1141, 1587
EcoT38I GRGCYC 2 cut(s) 524, 1260
ErhI CCWWGG 4 cut(s) 65, 229, 482, 1226
FaqI GGGAC 5 cut(s) 314, 357, 800, 1110, 1342
FbaI TGATCA 1 cut(s) 862
Fnu4HI GCNGC 4 cut(s) 11, 1194, 1488, 1559
FokI GGATG 3 cut(s) 1217, 1541, 1562
FriOI GRGCYC 2 cut(s) 524, 1260
Fsp4HI GCNGC 4 cut(s) 11, 1194, 1488, 1559
FspBI CTAG 4 cut(s) 543, 794, 944, 993
FspI TGCGCA 1 cut(s) 396
GlaI GCGC 1 cut(s) 396
GluI GCNGC 4 cut(s) 11, 1194, 1488, 1559
GsuI CTGGAG 2 cut(s) 184, 1454
HaeIII GGCC 2 cut(s) 41, 1014
HapII CCGG 1 cut(s) 1094
HhaI GCGC 1 cut(s) 397
Hin6I GCGC 1 cut(s) 395
HinP1I GCGC 1 cut(s) 395
HincII GTYRAC 3 cut(s) 744, 758, 870
HindII GTYRAC 3 cut(s) 744, 758, 870
HindIII AAGCTT 1 cut(s) 119
HpaI GTTAAC 1 cut(s) 744
HpaII CCGG 1 cut(s) 1094
HphI GGTGA 5 cut(s) 278, 314, 446, 1018, 1463
Hpy166II GTNNAC 5 cut(s) 744, 758, 870, 1127, 1186
Hpy188I TCNGA 5 cut(s) 97, 526, 682, 898, 1285
Hpy188III TCNNGA 4 cut(s) 278, 585, 1415, 1508
Hpy8I GTNNAC 5 cut(s) 744, 758, 870, 1127, 1186
HpyAV CCTTC 8 cut(s) 424, 616, 681, 779, 1033, 1319, 1328, 1400
HpyCH4III ACNGT 6 cut(s) 24, 295, 415, 748, 874, 1081
HpyCH4IV ACGT 1 cut(s) 732
HpyF10VI GCNNNNNNNGC 5 cut(s) 195, 216, 225, 779, 1004
HpySE526I ACGT 1 cut(s) 732
HspAI GCGC 1 cut(s) 395
Ksp22I TGATCA 1 cut(s) 862
KspAI GTTAAC 1 cut(s) 744
Kzo9I GATC 5 cut(s) 223, 350, 862, 1285, 1504
LguI GCTCTTC 1 cut(s) 1548
LmnI GCTCC 4 cut(s) 203, 380, 487, 779
Lsp1109I GCAGC 4 cut(s) 22, 1180, 1474, 1570
LweI GCATC 2 cut(s) 835, 1519
MaeI CTAG 4 cut(s) 543, 794, 944, 993
MaeII ACGT 1 cut(s) 732
MaeIII GTNAC 1 cut(s) 514
MalI GATC 5 cut(s) 225, 352, 864, 1287, 1506
MbiI CCGCTC 1 cut(s) 782
MboI GATC 5 cut(s) 223, 350, 862, 1285, 1504
MfeI CAATTG 1 cut(s) 957
MflI RGATCY 1 cut(s) 350
MhlI GDGCHC 4 cut(s) 405, 524, 1114, 1260
MluCI AATT 7 cut(s) 366, 438, 597, 720, 957, 1042, 1425
MlyI GAGTC 4 cut(s) 1092, 1461, 1502, 1571
MmeI TCCRAC 1 cut(s) 314
Mph1103I ATGCAT 2 cut(s) 1141, 1587
MroXI GAANNNNTTC 3 cut(s) 720, 903, 1410
MseI TTAA 3 cut(s) 57, 743, 1476
MspI CCGG 1 cut(s) 1094
MspR9I CCNGG 4 cut(s) 495, 891, 1095, 1472
MunI CAATTG 1 cut(s) 957
Mva1269I GAATGC 2 cut(s) 957, 1139
MvaI CCWGG 3 cut(s) 495, 891, 1472
MwoI GCNNNNNNNGC 5 cut(s) 195, 216, 225, 779, 1004
NciI CCSGG 1 cut(s) 1095
NcoI CCATGG 3 cut(s) 65, 229, 482
NdeII GATC 5 cut(s) 223, 350, 862, 1285, 1504
NlaIV GGNNCC 6 cut(s) 352, 480, 654, 1052, 1111, 1219
NsbI TGCGCA 1 cut(s) 396
NsiI ATGCAT 2 cut(s) 1141, 1587
NspI RCATGY 2 cut(s) 1139, 1373
PaeR7I CTCGAG 2 cut(s) 375, 1259
PceI AGGCCT 1 cut(s) 41
PciSI GCTCTTC 1 cut(s) 1548
PctI GAATGC 2 cut(s) 957, 1139
PdmI GAANNNNTTC 3 cut(s) 720, 903, 1410
PfeI GAWTC 6 cut(s) 274, 418, 608, 641, 836, 1120
PflMI CCANNNNNTGG 1 cut(s) 962
PfoI TCCNGGA 1 cut(s) 1093
PkrI GCNGC 4 cut(s) 12, 1195, 1489, 1560
PleI GAGTC 4 cut(s) 1092, 1461, 1501, 1571
PpsI GAGTC 4 cut(s) 1092, 1461, 1501, 1571
Psp124BI GAGCTC 1 cut(s) 1260
Psp1406I AACGTT 1 cut(s) 732
Psp6I CCWGG 3 cut(s) 493, 889, 1470
PspGI CCWGG 3 cut(s) 493, 889, 1470
PspN4I GGNNCC 6 cut(s) 352, 480, 654, 1052, 1111, 1219
PspPI GGNCC 3 cut(s) 478, 548, 1012
PspXI VCTCGAGB 2 cut(s) 375, 1259
PsrI GAACNNNNNNTAC 2 cut(s) 1356, 1388
PstI CTGCAG 1 cut(s) 1009
PstNI CAGNNNCTG 1 cut(s) 1085
PsuI RGATCY 1 cut(s) 350
RsaI GTAC 5 cut(s) 412, 499, 973, 1265, 1365
RsaNI GTAC 5 cut(s) 411, 498, 972, 1264, 1364
SacI GAGCTC 1 cut(s) 1260
SapI GCTCTTC 1 cut(s) 1548
SaqAI TTAA 3 cut(s) 57, 743, 1476
SatI GCNGC 4 cut(s) 11, 1194, 1488, 1559
Sau3AI GATC 5 cut(s) 223, 350, 862, 1285, 1504
Sau96I GGNCC 3 cut(s) 478, 548, 1012
ScaI AGTACT 1 cut(s) 973
SchI GAGTC 4 cut(s) 1092, 1461, 1502, 1571
ScrFI CCNGG 4 cut(s) 495, 891, 1095, 1472
SduI GDGCHC 4 cut(s) 405, 524, 1114, 1260
SfaNI GCATC 2 cut(s) 835, 1519
SfcI CTRYAG 2 cut(s) 131, 1005
Sfr274I CTCGAG 2 cut(s) 375, 1259
SinI GGWCC 2 cut(s) 478, 548
SlaI CTCGAG 2 cut(s) 375, 1259
SmlI CTYRAG 2 cut(s) 375, 1259
SmoI CTYRAG 2 cut(s) 375, 1259
Sse9I AATT 7 cut(s) 366, 438, 597, 720, 957, 1042, 1425
SseBI AGGCCT 1 cut(s) 41
SsiI CCGC 2 cut(s) 782, 1147
SspMI CTAG 4 cut(s) 543, 794, 944, 993
SstI GAGCTC 1 cut(s) 1260
StuI AGGCCT 1 cut(s) 41
StyD4I CCNGG 4 cut(s) 493, 889, 1093, 1470
StyI CCWWGG 4 cut(s) 65, 229, 482, 1226
TaaI ACNGT 6 cut(s) 24, 295, 415, 748, 874, 1081
TaiI ACGT 1 cut(s) 735
TaqI TCGA 7 cut(s) 77, 116, 356, 376, 586, 1260, 1288
TasI AATT 7 cut(s) 366, 438, 597, 720, 957, 1042, 1425
TatI WGTACW 1 cut(s) 971
TfiI GAWTC 6 cut(s) 274, 418, 608, 641, 836, 1120
Tru1I TTAA 3 cut(s) 57, 743, 1476
Tru9I TTAA 3 cut(s) 57, 743, 1476
TscAI CASTG 7 cut(s) 196, 313, 420, 567, 652, 883, 1014
TseI GCWGC 4 cut(s) 10, 1193, 1487, 1558
TspDTI ATGAA 5 cut(s) 410, 443, 635, 1359, 1566
TspRI CASTG 7 cut(s) 196, 313, 420, 567, 652, 883, 1014
Van91I CCANNNNNTGG 1 cut(s) 962
VpaK11BI GGWCC 2 cut(s) 478, 548
XapI RAATTY 2 cut(s) 438, 720
XceI RCATGY 2 cut(s) 1139, 1373
XcmI CCANNNNNNNNNTGG 2 cut(s) 227, 1121
XhoI CTCGAG 2 cut(s) 375, 1259
XmnI GAANNNNTTC 3 cut(s) 720, 903, 1410
XspI CTAG 4 cut(s) 543, 794, 944, 993
ZrmI AGTACT 1 cut(s) 973
Zsp2I ATGCAT 2 cut(s) 1141, 1587
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.