Prupe.3G039800_v2.0.a1

Transcription initiation factor TFIID subunit

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp03
OG0012450
Physical Location & Seq
Reverse (-)
2874326 .. 2876145
1820 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.3G039800.1

Sequence Viewer

Length: 531 bp
ATGGCAGGGGAAGATGAGGACTTGCCCAGAGATGCAAAGATTGTGAAAACGCTGTTAAAATCGATGGGTGTGGAGGAATATGAGCCTCGTGTTATTCACCAATTCTTGGAGCTGTGGTATCGATATGTGGTCGATGTGCTCACTGATGCACAGGTCTACTCAGAACATGCTGGTAAGCCCGCAATTGATTGTGACGATGTCAAGCTTGCTATACAGTCCAAGGTTAATTTCAGCTTCTCACAGCCCCCTCCAAGGGAGGTGCTACTGGAGTTGGCTAGAAACAGGAACAAAATCCCATTACCAAAATCAATTGCAGGGCCTGGTGTGGCGTTGCCACCTGAACAGGACACATTGATCAGCCCAAACTATCAACTGGCAATCCCAAAGAAACAATCTGCTCAAGCAGTAGAAGAAATGGAGGAAGATGAAGAACCTGCTGAACCCAATCCCCCCCAGGAACAGAAGCCCTCTGATCTGCCTCAGGGTACTCCCCAAAGGGTATCCTTTCCCCTTGCTAAACGCACCAAGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000123 GO:0000124 GO:0000428 GO:0001067 GO:0001101 GO:0003674 GO:0003676 GO:0003677 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005667 GO:0005669 GO:0006139 GO:0006325 GO:0006351 GO:0006355 GO:0006357 GO:0006366 GO:0006464 GO:0006473 GO:0006475 GO:0006725 GO:0006807 GO:0006996 GO:0007584 GO:0008134 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009605 GO:0009889 GO:0009891 GO:0009893 GO:0009987 GO:0009991 GO:0010033 GO:0010243 GO:0010467 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0010628 GO:0016043 GO:0016070 GO:0016569 GO:0016570 GO:0016573 GO:0016591 GO:0018130 GO:0018193 GO:0018205 GO:0018393 GO:0018394 GO:0019219 GO:0019222 GO:0019438 GO:0019538 GO:0030880 GO:0031248 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0031667 GO:0031974 GO:0031981 GO:0032774 GO:0032991 GO:0034641 GO:0034645 GO:0034654 GO:0034708 GO:0035097 GO:0036211 GO:0042221 GO:0042493 GO:0043170 GO:0043200 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0043412 GO:0043543 GO:0043966 GO:0044212 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044271 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044451 GO:0044464 GO:0044665 GO:0044798 GO:0045893 GO:0045935 GO:0045944 GO:0046483 GO:0048518 GO:0048522 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051173 GO:0051252 GO:0051254 GO:0051276 GO:0055029 GO:0060255 GO:0061695 GO:0065007 GO:0070013 GO:0070461 GO:0071339 GO:0071704 GO:0071840 GO:0080090 GO:0090304 GO:0090575 GO:0097159 GO:0097659 GO:1901360 GO:1901362 GO:1901363 GO:1901564 GO:1901576 GO:1901698 GO:1901700 GO:1902065 GO:1902493 GO:1902494 GO:1902680 GO:1903506 GO:1903508 GO:1905368 GO:1990234 GO:2000112 GO:2001141
KEGG Pathways
Metabolic & Signaling
ko03022 ko05168 map03022 map05168
Pfam Domains
Protein Families
TFIID-31kDa

Protein Analysis

177

Amino Acids

19.75

Weight (kDa)

4.9

Isoelectric Point (pI)

52.91

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0012450)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G54140
fragaria_vesca FvH4_6g34870 FvH4_6g34870
malus_domestica MD09G1181700.v1.1
prunus_persica Prupe.3G039800_v2.0.a1
pyrus_communis pycom09g09940
rosa_chinensis RchiOBHm_Chr2g0145741
rosa_laevigata RLG00000010130 RLG00000020165
rosa_multiflora Rmu_sc0000473.1_g000008
rosa_roxburghii Rroxscaffold_152G00434720 Rroxscaffold_2G00100480
rosa_rugosa Rorug02G0392900 Rorug02G0393000
rosa_samantha Rh2AG447300 Rh2BG459600 Rh2CG434300 Rh2DG469100
rosa_wichuraiana Rw2G036550

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 442
AccB7I CCANNNNNTGG 1 cut(s) 106
AccI GTMKAC 1 cut(s) 156
AciI CCGC 1 cut(s) 180
AdeI CACNNNGTG 1 cut(s) 528
AfaI GTAC 1 cut(s) 487
AfiI CCNNNNNNNGG 3 cut(s) 106, 252, 253
AjnI CCWGG 2 cut(s) 319, 453
AjuI GAANNNNNNNTTGG 2 cut(s) 212, 244
AluBI AGCT 3 cut(s) 112, 205, 234
AluI AGCT 3 cut(s) 112, 205, 234
Alw21I GWGCWC 1 cut(s) 141
AlwNI CAGNNNCTG 1 cut(s) 320
AoxI GGCC 1 cut(s) 317
AspS9I GGNCC 1 cut(s) 317
AsuHPI GGTGA 1 cut(s) 89
AxyI CCTNAGG 1 cut(s) 480
BauI CACGAG 1 cut(s) 87
Bbv12I GWGCWC 1 cut(s) 141
BccI CCATC 1 cut(s) 58
BciT130I CCWGG 2 cut(s) 321, 455
BciVI GTATCC 1 cut(s) 511
BclI TGATCA 1 cut(s) 354
BfaI CTAG 1 cut(s) 276
BfuAI ACCTGC 1 cut(s) 442
BfuI GTATCC 1 cut(s) 511
Bme1390I CCNGG 2 cut(s) 321, 455
BmgT120I GGNCC 1 cut(s) 317
BmrFI CCNGG 2 cut(s) 321, 455
BmsI GCATC 2 cut(s) 22, 136
BpmI CTGGAG 1 cut(s) 287
BpuEI CTTGAG 1 cut(s) 384
Bsa29I ATCGAT 2 cut(s) 62, 121
BsaJI CCNNGG 3 cut(s) 219, 251, 453
BsaXI ACNNNNNCTCC 2 cut(s) 101, 131
Bsc4I CCNNNNNNNGG 3 cut(s) 106, 252, 253
Bse1I ACTGG 2 cut(s) 270, 378
Bse21I CCTNAGG 1 cut(s) 480
BseBI CCWGG 2 cut(s) 321, 455
BseCI ATCGAT 2 cut(s) 62, 121
BseDI CCNNGG 3 cut(s) 219, 251, 453
BseLI CCNNNNNNNGG 3 cut(s) 106, 252, 253
BseMII CTCAG 2 cut(s) 174, 494
BseNI ACTGG 2 cut(s) 270, 378
BshFI GGCC 1 cut(s) 319
BshVI ATCGAT 2 cut(s) 62, 121
BsiHKAI GWGCWC 1 cut(s) 141
BslI CCNNNNNNNGG 3 cut(s) 106, 252, 253
BsnI GGCC 1 cut(s) 319
Bsp1286I GDGCHC 1 cut(s) 141
Bsp143I GATC 2 cut(s) 354, 472
BspACI CCGC 1 cut(s) 180
BspANI GGCC 1 cut(s) 319
BspCNI CTCAG 2 cut(s) 173, 493
BspDI ATCGAT 2 cut(s) 62, 121
BspMI ACCTGC 1 cut(s) 442
BsrI ACTGG 2 cut(s) 270, 378
BssECI CCNNGG 3 cut(s) 219, 251, 453
BssMI GATC 2 cut(s) 354, 472
BssSI CACGAG 1 cut(s) 87
BssT1I CCWWGG 2 cut(s) 219, 251
Bst2BI CACGAG 1 cut(s) 87
Bst2UI CCWGG 2 cut(s) 321, 455
Bst4CI ACNGT 1 cut(s) 216
BstC8I GCNNGC 2 cut(s) 180, 207
BstDEI CTNAG 2 cut(s) 160, 480
BstKTI GATC 2 cut(s) 357, 475
BstMBI GATC 2 cut(s) 354, 472
BstNI CCWGG 2 cut(s) 321, 455
BstNSI RCATGY 1 cut(s) 170
BstSCI CCNGG 2 cut(s) 319, 453
Bsu15I ATCGAT 2 cut(s) 62, 121
Bsu36I CCTNAGG 1 cut(s) 480
BsuI GTATCC 1 cut(s) 511
BsuRI GGCC 1 cut(s) 319
BsuTUI ATCGAT 2 cut(s) 62, 121
BtsIMutI CAGTG 1 cut(s) 141
BveI ACCTGC 1 cut(s) 442
Cac8I GCNNGC 2 cut(s) 180, 207
CaiI CAGNNNCTG 1 cut(s) 320
Cfr13I GGNCC 1 cut(s) 317
ClaI ATCGAT 2 cut(s) 62, 121
Csp6I GTAC 1 cut(s) 486
CviAII CATG 1 cut(s) 167
CviQI GTAC 1 cut(s) 486
DdeI CTNAG 2 cut(s) 160, 480
DpnI GATC 2 cut(s) 356, 474
DpnII GATC 2 cut(s) 354, 472
DraIII CACNNNGTG 1 cut(s) 528
Eco130I CCWWGG 2 cut(s) 219, 251
Eco81I CCTNAGG 1 cut(s) 480
EcoO109I RGGNCCY 1 cut(s) 317
EcoRII CCWGG 2 cut(s) 319, 453
EcoT14I CCWWGG 2 cut(s) 219, 251
ErhI CCWWGG 2 cut(s) 219, 251
FaeI CATG 1 cut(s) 170
FaiI YATR 4 cut(s) 81, 126, 168, 212
FatI CATG 1 cut(s) 166
FauI CCCGC 1 cut(s) 187
FbaI TGATCA 1 cut(s) 354
FblI GTMKAC 1 cut(s) 156
FspBI CTAG 1 cut(s) 276
GsuI CTGGAG 1 cut(s) 287
HaeIII GGCC 1 cut(s) 319
Hin1II CATG 1 cut(s) 170
HindIII AAGCTT 1 cut(s) 203
HphI GGTGA 1 cut(s) 89
Hpy166II GTNNAC 1 cut(s) 157
Hpy188I TCNGA 2 cut(s) 163, 472
Hpy8I GTNNAC 1 cut(s) 157
HpyCH4III ACNGT 1 cut(s) 216
HpyCH4V TGCA 3 cut(s) 35, 149, 314
HpyF3I CTNAG 2 cut(s) 160, 480
Hsp92II CATG 1 cut(s) 170
Ksp22I TGATCA 1 cut(s) 354
Kzo9I GATC 2 cut(s) 354, 472
LmnI GCTCC 1 cut(s) 109
LweI GCATC 2 cut(s) 22, 136
MaeI CTAG 1 cut(s) 276
MaeIII GTNAC 1 cut(s) 191
MalI GATC 2 cut(s) 356, 474
MboI GATC 2 cut(s) 354, 472
MboII GAAGA 4 cut(s) 23, 422, 434, 440
MfeI CAATTG 2 cut(s) 183, 309
MhlI GDGCHC 1 cut(s) 141
MluCI AATT 4 cut(s) 101, 183, 226, 309
MnlI CCTC 8 cut(s) 10, 67, 96, 250, 258, 412, 478, 489
MseI TTAA 2 cut(s) 56, 225
MspR9I CCNGG 2 cut(s) 321, 455
MunI CAATTG 2 cut(s) 183, 309
MvaI CCWGG 2 cut(s) 321, 455
NdeII GATC 2 cut(s) 354, 472
NlaIII CATG 1 cut(s) 170
NmuCI GTSAC 1 cut(s) 191
NspI RCATGY 1 cut(s) 170
PflFI GACNNNGTC 1 cut(s) 197
PflMI CCANNNNNTGG 1 cut(s) 106
Psp6I CCWGG 2 cut(s) 319, 453
PspGI CCWGG 2 cut(s) 319, 453
PspPI GGNCC 1 cut(s) 317
PstNI CAGNNNCTG 1 cut(s) 320
PsyI GACNNNGTC 1 cut(s) 197
RsaI GTAC 1 cut(s) 487
RsaNI GTAC 1 cut(s) 486
SaqAI TTAA 2 cut(s) 56, 225
Sau3AI GATC 2 cut(s) 354, 472
Sau96I GGNCC 1 cut(s) 317
ScrFI CCNGG 2 cut(s) 321, 455
SduI GDGCHC 1 cut(s) 141
SetI ASST 8 cut(s) 114, 156, 207, 225, 236, 261, 340, 436
SfaNI GCATC 2 cut(s) 22, 136
SmlI CTYRAG 1 cut(s) 399
SmoI CTYRAG 1 cut(s) 399
Sse9I AATT 4 cut(s) 101, 183, 226, 309
SsiI CCGC 1 cut(s) 180
SspMI CTAG 1 cut(s) 276
StyD4I CCNGG 2 cut(s) 319, 453
StyI CCWWGG 2 cut(s) 219, 251
TaaI ACNGT 1 cut(s) 216
TaqI TCGA 3 cut(s) 62, 121, 132
TasI AATT 4 cut(s) 101, 183, 226, 309
Tru1I TTAA 2 cut(s) 56, 225
Tru9I TTAA 2 cut(s) 56, 225
TscAI CASTG 1 cut(s) 148
TseFI GTSAC 1 cut(s) 191
Tsp45I GTSAC 1 cut(s) 191
TspDTI ATGAA 1 cut(s) 441
TspRI CASTG 1 cut(s) 148
Tth111I GACNNNGTC 1 cut(s) 197
Van91I CCANNNNNTGG 1 cut(s) 106
XceI RCATGY 1 cut(s) 170
XmiI GTMKAC 1 cut(s) 156
XspI CTAG 1 cut(s) 276
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.